data_9DXA # _model_server_result.job_id Kw1rM_qn4a1sQzfPZt80_Q _model_server_result.datetime_utc '2024-12-26 17:18:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9dxa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":901}' # _entry.id 9DXA # _exptl.entry_id 9DXA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 744.034 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 18 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9DXA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9DXA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 54 1_555 A SG CYS 402 A CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 57 A CYS 57 1_555 A SG CYS 65 A CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 205 A CYS 113 1_555 A SG CYS 387 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 54 B CYS 54 1_555 B SG CYS 402 B CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 B SG CYS 57 B CYS 57 1_555 B SG CYS 65 B CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 B SG CYS 205 B CYS 113 1_555 B SG CYS 387 B CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 C SG CYS 54 C CYS 54 1_555 C SG CYS 402 C CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 C SG CYS 57 C CYS 57 1_555 C SG CYS 65 C CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 C SG CYS 205 C CYS 113 1_555 C SG CYS 387 C CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 D SG CYS 54 D CYS 54 1_555 D SG CYS 402 D CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 D SG CYS 57 D CYS 57 1_555 D SG CYS 65 D CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 D SG CYS 205 D CYS 113 1_555 D SG CYS 387 D CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 E SG CYS 54 E CYS 54 1_555 E SG CYS 355 E CYS 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 E SG CYS 154 E CYS 154 1_555 E SG CYS 340 E CYS 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf15 F SG CYS 54 F CYS 54 1_555 F SG CYS 355 F CYS 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf16 F SG CYS 154 F CYS 154 1_555 F SG CYS 340 F CYS 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C5 PEE sing 235 n n C5 C4 PEE sing 236 n n C4 O4P PEE sing 237 n n O4P P PEE sing 238 n n O1P P PEE doub 239 n n C1 O3P PEE sing 240 n n C1 C2 PEE sing 241 n n O3P P PEE sing 242 n n P O2P PEE sing 243 n n C2 C3 PEE sing 244 n n C2 O2 PEE sing 245 n n C3 O3 PEE sing 246 n n O2 C10 PEE sing 247 n n C31 C30 PEE sing 248 n n C31 C32 PEE sing 249 n n C33 C32 PEE sing 250 n n C33 C34 PEE sing 251 n n C30 O3 PEE sing 252 n n C30 O5 PEE doub 253 n n C10 O4 PEE doub 254 n n C10 C11 PEE sing 255 n n C34 C35 PEE sing 256 n n C11 C12 PEE sing 257 n n C35 C36 PEE sing 258 n n C36 C37 PEE sing 259 n n C37 C38 PEE sing 260 n n C38 C39 PEE doub 261 z n C12 C13 PEE sing 262 n n C39 C40 PEE sing 263 n n C13 C14 PEE sing 264 n n C14 C15 PEE sing 265 n n C40 C41 PEE sing 266 n n C15 C16 PEE sing 267 n n C41 C42 PEE sing 268 n n C16 C17 PEE sing 269 n n C42 C43 PEE sing 270 n n C17 C18 PEE sing 271 n n C43 C44 PEE sing 272 n n C18 C19 PEE doub 273 z n C46 C47 PEE sing 274 n n C46 C45 PEE sing 275 n n C44 C45 PEE sing 276 n n C19 C20 PEE sing 277 n n C20 C21 PEE sing 278 n n C21 C22 PEE sing 279 n n C22 C23 PEE sing 280 n n C23 C24 PEE sing 281 n n C24 C25 PEE sing 282 n n C26 C25 PEE sing 283 n n C26 C27 PEE sing 284 n n C27 H7 PEE sing 285 n n C27 H8 PEE sing 286 n n C27 H82 PEE sing 287 n n C26 H5 PEE sing 288 n n C26 H6 PEE sing 289 n n C25 H12 PEE sing 290 n n C25 H4 PEE sing 291 n n C24 H10 PEE sing 292 n n C24 H11 PEE sing 293 n n C23 H83 PEE sing 294 n n C23 H9 PEE sing 295 n n C22 H2 PEE sing 296 n n C22 H3 PEE sing 297 n n C21 H14 PEE sing 298 n n C21 H1 PEE sing 299 n n C20 H16 PEE sing 300 n n C20 H13 PEE sing 301 n n C19 H18 PEE sing 302 n n C18 H20 PEE sing 303 n n C17 H22 PEE sing 304 n n C17 H19 PEE sing 305 n n C16 H21 PEE sing 306 n n C16 H28 PEE sing 307 n n C15 H23 PEE sing 308 n n C15 H24 PEE sing 309 n n C14 H25 PEE sing 310 n n C14 H26 PEE sing 311 n n C13 H17 PEE sing 312 n n C13 H27 PEE sing 313 n n C12 H15 PEE sing 314 n n C12 H29 PEE sing 315 n n C11 H30 PEE sing 316 n n C11 H31 PEE sing 317 n n C2 H32 PEE sing 318 n n C1 H33 PEE sing 319 n n C1 H34 PEE sing 320 n n O2P H35 PEE sing 321 n n C4 H36 PEE sing 322 n n C4 H37 PEE sing 323 n n C5 H38 PEE sing 324 n n C5 H39 PEE sing 325 n n N H40 PEE sing 326 n n N H41 PEE sing 327 n n C3 H43 PEE sing 328 n n C3 H44 PEE sing 329 n n C31 H45 PEE sing 330 n n C31 H46 PEE sing 331 n n C32 H47 PEE sing 332 n n C32 H48 PEE sing 333 n n C33 H49 PEE sing 334 n n C33 H50 PEE sing 335 n n C34 H51 PEE sing 336 n n C34 H52 PEE sing 337 n n C35 H53 PEE sing 338 n n C35 H54 PEE sing 339 n n C36 H55 PEE sing 340 n n C36 H56 PEE sing 341 n n C37 H57 PEE sing 342 n n C37 H58 PEE sing 343 n n C38 H59 PEE sing 344 n n C39 H60 PEE sing 345 n n C40 H81 PEE sing 346 n n C40 H61 PEE sing 347 n n C41 H80 PEE sing 348 n n C41 H62 PEE sing 349 n n C42 H63 PEE sing 350 n n C42 H64 PEE sing 351 n n C43 H65 PEE sing 352 n n C43 H66 PEE sing 353 n n C44 H67 PEE sing 354 n n C44 H68 PEE sing 355 n n C45 H69 PEE sing 356 n n C45 H70 PEE sing 357 n n C46 H71 PEE sing 358 n n C46 H72 PEE sing 359 n n C47 H73 PEE sing 360 n n C47 H74 PEE sing 361 n n C47 H75 PEE sing 362 n n # _atom_sites.entry_id 9DXA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 PEE A 1 901 900 PEE PEE . H 3 PEE A 1 902 903 PEE PEE . I 3 PEE A 1 903 916 PEE PEE . J 3 PEE A 1 904 917 PEE PEE . K 3 PEE B 1 901 904 PEE PEE . L 3 PEE B 1 902 905 PEE PEE . M 3 PEE B 1 903 906 PEE PEE . N 3 PEE C 1 901 907 PEE PEE . O 3 PEE C 1 902 908 PEE PEE . P 3 PEE C 1 903 909 PEE PEE . Q 3 PEE D 1 901 901 PEE PEE . R 3 PEE D 1 902 910 PEE PEE . S 3 PEE D 1 903 911 PEE PEE . T 3 PEE E 1 901 912 PEE PEE . U 3 PEE E 1 902 913 PEE PEE . V 3 PEE F 1 901 902 PEE PEE . W 3 PEE F 1 902 914 PEE PEE . X 3 PEE F 1 903 915 PEE PEE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 PEE . . . Q 3 228.825 204.199 205.271 1 92.03 ? C27 PEE 901 D 1 HETATM 2 C C26 PEE . . . Q 3 227.943 204.751 204.178 1 92.49 ? C26 PEE 901 D 1 HETATM 3 C C25 PEE . . . Q 3 228.525 204.607 202.795 1 92.6 ? C25 PEE 901 D 1 HETATM 4 C C24 PEE . . . Q 3 227.651 205.158 201.695 1 95.43 ? C24 PEE 901 D 1 HETATM 5 C C23 PEE . . . Q 3 228.224 204.999 200.308 1 94.57 ? C23 PEE 901 D 1 HETATM 6 C C22 PEE . . . Q 3 227.349 205.553 199.21 1 96.62 ? C22 PEE 901 D 1 HETATM 7 C C21 PEE . . . Q 3 227.903 205.356 197.81 1 93.93 ? C21 PEE 901 D 1 HETATM 8 C C20 PEE . . . Q 3 227.016 205.871 196.72 1 93.66 ? C20 PEE 901 D 1 HETATM 9 C C19 PEE . . . Q 3 225.652 205.254 196.729 1 97.78 ? C19 PEE 901 D 1 HETATM 10 C C18 PEE . . . Q 3 224.695 205.493 195.869 1 96.03 ? C18 PEE 901 D 1 HETATM 11 C C17 PEE . . . Q 3 224.782 206.421 194.698 1 94.9 ? C17 PEE 901 D 1 HETATM 12 C C16 PEE . . . Q 3 223.503 206.522 193.927 1 95.2 ? C16 PEE 901 D 1 HETATM 13 C C15 PEE . . . Q 3 223.578 207.425 192.704 1 95.79 ? C15 PEE 901 D 1 HETATM 14 C C14 PEE . . . Q 3 222.266 207.606 191.983 1 95.64 ? C14 PEE 901 D 1 HETATM 15 C C13 PEE . . . Q 3 222.345 208.485 190.759 1 97.51 ? C13 PEE 901 D 1 HETATM 16 C C12 PEE . . . Q 3 223.04 207.852 189.564 1 95.17 ? C12 PEE 901 D 1 HETATM 17 C C11 PEE . . . Q 3 223.161 208.804 188.416 1 94.05 ? C11 PEE 901 D 1 HETATM 18 C C10 PEE . . . Q 3 223.374 208.142 187.083 1 94.64 ? C10 PEE 901 D 1 HETATM 19 O O4 PEE . . . Q 3 224.322 208.347 186.373 1 93.07 ? O4 PEE 901 D 1 HETATM 20 O O2 PEE . . . Q 3 222.33 207.373 186.733 1 101.25 ? O2 PEE 901 D 1 HETATM 21 C C2 PEE . . . Q 3 222.256 206.848 185.377 1 102.04 ? C2 PEE 901 D 1 HETATM 22 C C1 PEE . . . Q 3 223.15 205.648 185.154 1 98.26 ? C1 PEE 901 D 1 HETATM 23 O O3P PEE . . . Q 3 224.501 206.034 184.773 1 100.92 ? O3P PEE 901 D 1 HETATM 24 P P PEE . . . Q 3 224.747 206.772 183.367 1 115.12 ? P PEE 901 D 1 HETATM 25 O O2P PEE . . . Q 3 224.518 208.248 183.544 1 104.81 ? O2P PEE 901 D 1 HETATM 26 O O1P PEE . . . Q 3 223.975 206.025 182.314 1 100.13 ? O1P PEE 901 D 1 HETATM 27 O O4P PEE . . . Q 3 226.329 206.588 183.148 1 101.42 ? O4P PEE 901 D 1 HETATM 28 C C4 PEE . . . Q 3 226.937 205.273 183.303 1 98.83 ? C4 PEE 901 D 1 HETATM 29 C C5 PEE . . . Q 3 226.627 204.378 182.131 1 98.01 ? C5 PEE 901 D 1 HETATM 30 N N PEE . . . Q 3 227.217 203.047 182.284 1 98.76 ? N PEE 901 D 1 HETATM 31 C C3 PEE . . . Q 3 220.795 206.559 185.115 1 100.18 ? C3 PEE 901 D 1 HETATM 32 O O3 PEE . . . Q 3 220.009 207.508 185.868 1 103.08 ? O3 PEE 901 D 1 HETATM 33 C C30 PEE . . . Q 3 218.694 207.464 185.687 1 98.48 ? C30 PEE 901 D 1 HETATM 34 O O5 PEE . . . Q 3 218.161 206.738 184.89 1 96.4 ? O5 PEE 901 D 1 HETATM 35 C C31 PEE . . . Q 3 217.987 208.429 186.596 1 96.63 ? C31 PEE 901 D 1 HETATM 36 C C32 PEE . . . Q 3 216.946 207.777 187.452 1 97.37 ? C32 PEE 901 D 1 HETATM 37 C C33 PEE . . . Q 3 216.422 208.698 188.539 1 97.77 ? C33 PEE 901 D 1 HETATM 38 C C34 PEE . . . Q 3 217.401 208.956 189.658 1 98.28 ? C34 PEE 901 D 1 HETATM 39 C C35 PEE . . . Q 3 217.679 207.751 190.526 1 98.58 ? C35 PEE 901 D 1 HETATM 40 C C36 PEE . . . Q 3 216.457 207.227 191.268 1 95.77 ? C36 PEE 901 D 1 HETATM 41 C C37 PEE . . . Q 3 216.714 206.034 192.138 1 96.72 ? C37 PEE 901 D 1 HETATM 42 C C38 PEE . . . Q 3 215.494 205.599 192.888 1 98.62 ? C38 PEE 901 D 1 HETATM 43 C C39 PEE . . . Q 3 215.364 204.601 193.726 1 98.85 ? C39 PEE 901 D 1 HETATM 44 C C40 PEE . . . Q 3 216.386 203.6 194.169 1 98.07 ? C40 PEE 901 D 1 HETATM 45 C C41 PEE . . . Q 3 215.845 202.658 195.2 1 99.36 ? C41 PEE 901 D 1 HETATM 46 C C42 PEE . . . Q 3 216.807 201.572 195.65 1 96.84 ? C42 PEE 901 D 1 HETATM 47 C C43 PEE . . . Q 3 216.253 200.68 196.735 1 99.87 ? C43 PEE 901 D 1 HETATM 48 C C44 PEE . . . Q 3 217.165 199.553 197.154 1 97.03 ? C44 PEE 901 D 1 HETATM 49 C C45 PEE . . . Q 3 216.624 198.718 198.289 1 95.73 ? C45 PEE 901 D 1 HETATM 50 C C46 PEE . . . Q 3 217.501 197.567 198.711 1 93.66 ? C46 PEE 901 D 1 HETATM 51 C C47 PEE . . . Q 3 217.689 196.519 197.642 1 96.76 ? C47 PEE 901 D 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 51 #