data_9DXA
#
_model_server_result.job_id            kUygYvLyz2Rz3WB3Fpin2A 
_model_server_result.datetime_utc      '2024-12-26 17:29:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9dxa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":903}' 
#
_entry.id    9DXA 
#
_exptl.entry_id    9DXA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              744.034 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_entity.pdbx_number_of_molecules    18 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9DXA 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9DXA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 54 A CYS 54 1_555 A SG CYS 402 A CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 A SG CYS 57 A CYS 57 1_555 A SG CYS 65 A CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 A SG CYS 205 A CYS 113 1_555 A SG CYS 387 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 54 B CYS 54 1_555 B SG CYS 402 B CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf5 B SG CYS 57 B CYS 57 1_555 B SG CYS 65 B CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 B SG CYS 205 B CYS 113 1_555 B SG CYS 387 B CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 C SG CYS 54 C CYS 54 1_555 C SG CYS 402 C CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf8 C SG CYS 57 C CYS 57 1_555 C SG CYS 65 C CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf9 C SG CYS 205 C CYS 113 1_555 C SG CYS 387 C CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf10 D SG CYS 54 D CYS 54 1_555 D SG CYS 402 D CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf11 D SG CYS 57 D CYS 57 1_555 D SG CYS 65 D CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf12 D SG CYS 205 D CYS 113 1_555 D SG CYS 387 D CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf13 E SG CYS 54 E CYS 54 1_555 E SG CYS 355 E CYS 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf14 E SG CYS 154 E CYS 154 1_555 E SG CYS 340 E CYS 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf15 F SG CYS 54 F CYS 54 1_555 F SG CYS 355 F CYS 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf16 F SG CYS 154 F CYS 154 1_555 F SG CYS 340 F CYS 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C41 H78 N O8 P' 
_chem_comp.formula_weight    744.034 
_chem_comp.id                PEE 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DOPE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C5 PEE sing 235 n n 
C5 C4 PEE sing 236 n n 
C4 O4P PEE sing 237 n n 
O4P P PEE sing 238 n n 
O1P P PEE doub 239 n n 
C1 O3P PEE sing 240 n n 
C1 C2 PEE sing 241 n n 
O3P P PEE sing 242 n n 
P O2P PEE sing 243 n n 
C2 C3 PEE sing 244 n n 
C2 O2 PEE sing 245 n n 
C3 O3 PEE sing 246 n n 
O2 C10 PEE sing 247 n n 
C31 C30 PEE sing 248 n n 
C31 C32 PEE sing 249 n n 
C33 C32 PEE sing 250 n n 
C33 C34 PEE sing 251 n n 
C30 O3 PEE sing 252 n n 
C30 O5 PEE doub 253 n n 
C10 O4 PEE doub 254 n n 
C10 C11 PEE sing 255 n n 
C34 C35 PEE sing 256 n n 
C11 C12 PEE sing 257 n n 
C35 C36 PEE sing 258 n n 
C36 C37 PEE sing 259 n n 
C37 C38 PEE sing 260 n n 
C38 C39 PEE doub 261 z n 
C12 C13 PEE sing 262 n n 
C39 C40 PEE sing 263 n n 
C13 C14 PEE sing 264 n n 
C14 C15 PEE sing 265 n n 
C40 C41 PEE sing 266 n n 
C15 C16 PEE sing 267 n n 
C41 C42 PEE sing 268 n n 
C16 C17 PEE sing 269 n n 
C42 C43 PEE sing 270 n n 
C17 C18 PEE sing 271 n n 
C43 C44 PEE sing 272 n n 
C18 C19 PEE doub 273 z n 
C46 C47 PEE sing 274 n n 
C46 C45 PEE sing 275 n n 
C44 C45 PEE sing 276 n n 
C19 C20 PEE sing 277 n n 
C20 C21 PEE sing 278 n n 
C21 C22 PEE sing 279 n n 
C22 C23 PEE sing 280 n n 
C23 C24 PEE sing 281 n n 
C24 C25 PEE sing 282 n n 
C26 C25 PEE sing 283 n n 
C26 C27 PEE sing 284 n n 
C27 H7 PEE sing 285 n n 
C27 H8 PEE sing 286 n n 
C27 H82 PEE sing 287 n n 
C26 H5 PEE sing 288 n n 
C26 H6 PEE sing 289 n n 
C25 H12 PEE sing 290 n n 
C25 H4 PEE sing 291 n n 
C24 H10 PEE sing 292 n n 
C24 H11 PEE sing 293 n n 
C23 H83 PEE sing 294 n n 
C23 H9 PEE sing 295 n n 
C22 H2 PEE sing 296 n n 
C22 H3 PEE sing 297 n n 
C21 H14 PEE sing 298 n n 
C21 H1 PEE sing 299 n n 
C20 H16 PEE sing 300 n n 
C20 H13 PEE sing 301 n n 
C19 H18 PEE sing 302 n n 
C18 H20 PEE sing 303 n n 
C17 H22 PEE sing 304 n n 
C17 H19 PEE sing 305 n n 
C16 H21 PEE sing 306 n n 
C16 H28 PEE sing 307 n n 
C15 H23 PEE sing 308 n n 
C15 H24 PEE sing 309 n n 
C14 H25 PEE sing 310 n n 
C14 H26 PEE sing 311 n n 
C13 H17 PEE sing 312 n n 
C13 H27 PEE sing 313 n n 
C12 H15 PEE sing 314 n n 
C12 H29 PEE sing 315 n n 
C11 H30 PEE sing 316 n n 
C11 H31 PEE sing 317 n n 
C2 H32 PEE sing 318 n n 
C1 H33 PEE sing 319 n n 
C1 H34 PEE sing 320 n n 
O2P H35 PEE sing 321 n n 
C4 H36 PEE sing 322 n n 
C4 H37 PEE sing 323 n n 
C5 H38 PEE sing 324 n n 
C5 H39 PEE sing 325 n n 
N H40 PEE sing 326 n n 
N H41 PEE sing 327 n n 
C3 H43 PEE sing 328 n n 
C3 H44 PEE sing 329 n n 
C31 H45 PEE sing 330 n n 
C31 H46 PEE sing 331 n n 
C32 H47 PEE sing 332 n n 
C32 H48 PEE sing 333 n n 
C33 H49 PEE sing 334 n n 
C33 H50 PEE sing 335 n n 
C34 H51 PEE sing 336 n n 
C34 H52 PEE sing 337 n n 
C35 H53 PEE sing 338 n n 
C35 H54 PEE sing 339 n n 
C36 H55 PEE sing 340 n n 
C36 H56 PEE sing 341 n n 
C37 H57 PEE sing 342 n n 
C37 H58 PEE sing 343 n n 
C38 H59 PEE sing 344 n n 
C39 H60 PEE sing 345 n n 
C40 H81 PEE sing 346 n n 
C40 H61 PEE sing 347 n n 
C41 H80 PEE sing 348 n n 
C41 H62 PEE sing 349 n n 
C42 H63 PEE sing 350 n n 
C42 H64 PEE sing 351 n n 
C43 H65 PEE sing 352 n n 
C43 H66 PEE sing 353 n n 
C44 H67 PEE sing 354 n n 
C44 H68 PEE sing 355 n n 
C45 H69 PEE sing 356 n n 
C45 H70 PEE sing 357 n n 
C46 H71 PEE sing 358 n n 
C46 H72 PEE sing 359 n n 
C47 H73 PEE sing 360 n n 
C47 H74 PEE sing 361 n n 
C47 H75 PEE sing 362 n n 
#
_atom_sites.entry_id                     9DXA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 PEE A 1 901 900 PEE PEE . 
H 3 PEE A 1 902 903 PEE PEE . 
I 3 PEE A 1 903 916 PEE PEE . 
J 3 PEE A 1 904 917 PEE PEE . 
K 3 PEE B 1 901 904 PEE PEE . 
L 3 PEE B 1 902 905 PEE PEE . 
M 3 PEE B 1 903 906 PEE PEE . 
N 3 PEE C 1 901 907 PEE PEE . 
O 3 PEE C 1 902 908 PEE PEE . 
P 3 PEE C 1 903 909 PEE PEE . 
Q 3 PEE D 1 901 901 PEE PEE . 
R 3 PEE D 1 902 910 PEE PEE . 
S 3 PEE D 1 903 911 PEE PEE . 
T 3 PEE E 1 901 912 PEE PEE . 
U 3 PEE E 1 902 913 PEE PEE . 
V 3 PEE F 1 901 902 PEE PEE . 
W 3 PEE F 1 902 914 PEE PEE . 
X 3 PEE F 1 903 915 PEE PEE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C22 PEE . . . M 3 235.144 217.149 198.489 1 68.27 ? C22 PEE 903 B 1 
HETATM 2 C C21 PEE . . . M 3 236.207 217.909 199.261 1 68.06 ? C21 PEE 903 B 1 
HETATM 3 C C20 PEE . . . M 3 237.611 217.613 198.833 1 69.61 ? C20 PEE 903 B 1 
HETATM 4 C C19 PEE . . . M 3 238.632 218.374 199.62 1 69.86 ? C19 PEE 903 B 1 
HETATM 5 C C18 PEE . . . M 3 239.544 219.185 199.148 1 72.93 ? C18 PEE 903 B 1 
HETATM 6 C C17 PEE . . . M 3 239.798 219.521 197.712 1 69.28 ? C17 PEE 903 B 1 
HETATM 7 C C16 PEE . . . M 3 240.805 220.617 197.545 1 64.67 ? C16 PEE 903 B 1 
HETATM 8 C C15 PEE . . . M 3 241.117 220.983 196.1 1 67.52 ? C15 PEE 903 B 1 
HETATM 9 C C14 PEE . . . M 3 241.92 222.252 195.956 1 66.36 ? C14 PEE 903 B 1 
HETATM 10 C C13 PEE . . . M 3 242.216 222.655 194.533 1 70.21 ? C13 PEE 903 B 1 
HETATM 11 C C12 PEE . . . M 3 243.312 221.847 193.86 1 64.42 ? C12 PEE 903 B 1 
HETATM 12 C C11 PEE . . . M 3 243.551 222.278 192.446 1 68.31 ? C11 PEE 903 B 1 
HETATM 13 C C10 PEE . . . M 3 244.807 221.708 191.851 1 69.78 ? C10 PEE 903 B 1 
HETATM 14 O O4 PEE . . . M 3 245.592 221.025 192.454 1 67.28 ? O4 PEE 903 B 1 
HETATM 15 O O2 PEE . . . M 3 244.986 222.069 190.569 1 72.95 ? O2 PEE 903 B 1 
HETATM 16 C C2 PEE . . . M 3 246.227 221.69 189.912 1 68.13 ? C2 PEE 903 B 1 
HETATM 17 C C1 PEE . . . M 3 246.017 221.686 188.415 1 65.03 ? C1 PEE 903 B 1 
HETATM 18 O O3P PEE . . . M 3 244.908 220.808 188.079 1 72.92 ? O3P PEE 903 B 1 
HETATM 19 P P PEE . . . M 3 244.368 220.773 186.567 1 94.01 ? P PEE 903 B 1 
HETATM 20 O O2P PEE . . . M 3 244.016 222.18 186.167 1 76.71 ? O2P PEE 903 B 1 
HETATM 21 O O1P PEE . . . M 3 243.337 219.683 186.458 1 74.17 ? O1P PEE 903 B 1 
HETATM 22 O O4P PEE . . . M 3 245.663 220.332 185.726 1 68.33 ? O4P PEE 903 B 1 
HETATM 23 C C4 PEE . . . M 3 245.538 220.119 184.293 1 61.52 ? C4 PEE 903 B 1 
HETATM 24 C C5 PEE . . . M 3 246.877 219.738 183.717 1 61.82 ? C5 PEE 903 B 1 
HETATM 25 N N PEE . . . M 3 247.394 218.506 184.314 1 63.08 ? N PEE 903 B 1 
HETATM 26 C C3 PEE . . . M 3 247.317 222.642 190.349 1 72.31 ? C3 PEE 903 B 1 
HETATM 27 O O3 PEE . . . M 3 247.323 223.773 189.447 1 74.61 ? O3 PEE 903 B 1 
HETATM 28 C C30 PEE . . . M 3 247.671 224.97 189.924 1 71.86 ? C30 PEE 903 B 1 
HETATM 29 O O5 PEE . . . M 3 247.791 225.94 189.223 1 69.24 ? O5 PEE 903 B 1 
HETATM 30 C C31 PEE . . . M 3 247.908 224.979 191.413 1 67.4 ? C31 PEE 903 B 1 
HETATM 31 C C32 PEE . . . M 3 248.084 226.358 191.967 1 68.51 ? C32 PEE 903 B 1 
HETATM 32 C C33 PEE . . . M 3 248.135 226.379 193.485 1 68.28 ? C33 PEE 903 B 1 
HETATM 33 C C34 PEE . . . M 3 248.192 227.765 194.077 1 61.44 ? C34 PEE 903 B 1 
HETATM 34 C C35 PEE . . . M 3 248.202 227.797 195.585 1 60.92 ? C35 PEE 903 B 1 
HETATM 35 C C36 PEE . . . M 3 248.218 229.199 196.178 1 64.93 ? C36 PEE 903 B 1 
HETATM 36 C C37 PEE . . . M 3 248.276 229.232 197.673 1 67.9 ? C37 PEE 903 B 1 
HETATM 37 C C38 PEE . . . M 3 247.127 228.529 198.326 1 66.35 ? C38 PEE 903 B 1 
HETATM 38 C C39 PEE . . . M 3 246.276 229.068 199.16 1 64.87 ? C39 PEE 903 B 1 
HETATM 39 C C40 PEE . . . M 3 246.29 230.491 199.624 1 68.96 ? C40 PEE 903 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           39 
#