data_9DYI
#
_model_server_result.job_id            Pt40jktLfHQKtO5MwJ7oCQ 
_model_server_result.datetime_utc      '2025-03-13 21:41:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9dyi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":601}' 
#
_entry.id    9DYI 
#
_exptl.entry_id    9DYI 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              147.129 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'GLUTAMIC ACID' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9DYI 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9DYI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 H N N 
? 2 J N N 
? 2 M N N 
? 2 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ALA 10 E ALA 10 1_555 K CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc2 A O GLN 293 E GLN 293 1_555 G CA CA . E CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc3 A O ASN 296 E ASN 296 1_555 G CA CA . E CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
metalc ? metalc4 A OD2 ASP 301 E ASP 301 1_555 G CA CA . E CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? 
metalc ? metalc5 A OD1 ASP 304 E ASP 304 1_555 G CA CA . E CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? 
metalc ? metalc6 A OD2 ASP 304 E ASP 304 1_555 G CA CA . E CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? 
metalc ? metalc7 G CA CA . E CA 602 1_555 B O ALA 10 D ALA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? 
metalc ? metalc8 B O GLN 293 D GLN 293 1_555 I CA CA . D CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc9 B O ASN 296 D ASN 296 1_555 I CA CA . D CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
metalc ? metalc10 B OD2 ASP 301 D ASP 301 1_555 I CA CA . D CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? 
metalc ? metalc11 B OD1 ASP 304 D ASP 304 1_555 I CA CA . D CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? 
metalc ? metalc12 B OD2 ASP 304 D ASP 304 1_555 I CA CA . D CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? 
metalc ? metalc13 I CA CA . D CA 602 1_555 D O ALA 10 C ALA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
metalc ? metalc14 C O ALA 10 A ALA 10 1_555 P CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? 
metalc ? metalc15 C O GLN 293 A GLN 293 1_555 K CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc16 C O ASN 296 A ASN 296 1_555 K CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
metalc ? metalc17 C OD2 ASP 301 A ASP 301 1_555 K CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? 
metalc ? metalc18 C OD1 ASP 304 A ASP 304 1_555 K CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? 
metalc ? metalc19 C OD2 ASP 304 A ASP 304 1_555 K CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? 
metalc ? metalc20 D O GLN 293 C GLN 293 1_555 N CA CA . C CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc21 D O ASN 296 C ASN 296 1_555 N CA CA . C CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
metalc ? metalc22 D OD2 ASP 301 C ASP 301 1_555 N CA CA . C CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? 
metalc ? metalc23 D OD1 ASP 304 C ASP 304 1_555 N CA CA . C CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? 
metalc ? metalc24 D OD2 ASP 304 C ASP 304 1_555 N CA CA . C CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? 
metalc ? metalc25 N CA CA . C CA 602 1_555 E O ALA 10 B ALA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc26 E O GLN 293 B GLN 293 1_555 P CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc27 E O ASN 296 B ASN 296 1_555 P CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
metalc ? metalc28 E OD2 ASP 301 B ASP 301 1_555 P CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? 
metalc ? metalc29 E OD1 ASP 304 B ASP 304 1_555 P CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? 
metalc ? metalc30 E OD2 ASP 304 B ASP 304 1_555 P CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? 
#
_chem_comp.formula           'C5 H9 N O4' 
_chem_comp.formula_weight    147.129 
_chem_comp.id                GLU 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              'GLUTAMIC ACID' 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA GLU sing 102 n n 
N H GLU sing 103 n n 
N H2 GLU sing 104 n n 
CA C GLU sing 105 n n 
CA CB GLU sing 106 n n 
CA HA GLU sing 107 n n 
C O GLU doub 108 n n 
C OXT GLU sing 109 n n 
CB CG GLU sing 110 n n 
CB HB2 GLU sing 111 n n 
CB HB3 GLU sing 112 n n 
CG CD GLU sing 113 n n 
CG HG2 GLU sing 114 n n 
CG HG3 GLU sing 115 n n 
CD OE1 GLU doub 116 n n 
CD OE2 GLU sing 117 n n 
OE2 HE2 GLU sing 118 n n 
OXT HXT GLU sing 119 n n 
#
_atom_sites.entry_id                     9DYI 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 GLU E 1 601 513 GLU GLU . 
G 3 CA E 1 602 378 CA CA . 
H 2 GLU D 1 601 513 GLU GLU . 
I 3 CA D 1 602 378 CA CA . 
J 2 GLU A 1 601 513 GLU GLU . 
K 3 CA A 1 602 378 CA CA . 
L 4 CL A 1 603 1 CL CL . 
M 2 GLU C 1 601 513 GLU GLU . 
N 3 CA C 1 602 378 CA CA . 
O 2 GLU B 1 601 513 GLU GLU . 
P 3 CA B 1 602 378 CA CA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N GLU . . . M 2 193.496 173.234 153.095 1 236.94 ? N GLU 601 C 1 
HETATM 2 C CA GLU . . . M 2 192.364 172.459 153.605 1 246.07 ? CA GLU 601 C 1 
HETATM 3 C C GLU . . . M 2 191.099 173.308 153.498 1 266.05 ? C GLU 601 C 1 
HETATM 4 O O GLU . . . M 2 190.902 174.09 152.579 1 275 ? O GLU 601 C 1 
HETATM 5 C CB GLU . . . M 2 192.64 172.031 155.048 1 229.7 ? CB GLU 601 C 1 
HETATM 6 C CG GLU . . . M 2 191.767 170.874 155.51 1 226.36 ? CG GLU 601 C 1 
HETATM 7 C CD GLU . . . M 2 192.521 169.711 156.136 1 219.11 ? CD GLU 601 C 1 
HETATM 8 O OE1 GLU . . . M 2 193.731 169.845 156.423 1 213.67 ? OE1 GLU 601 C 1 
HETATM 9 O OE2 GLU . . . M 2 191.89 168.663 156.324 1 212.68 ? OE2 GLU 601 C 1 
HETATM 10 O OXT GLU . . . M 2 190.242 173.202 154.346 1 275.58 ? OXT GLU 601 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           10 
#