data_9DYN # _model_server_result.job_id tCZBv9z9hBj73s1brgTCBg _model_server_result.datetime_utc '2025-02-05 08:56:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9dyn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":602}' # _entry.id 9DYN # _exptl.entry_id 9DYN _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 137.136 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-AMINOBENZOIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9DYN _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9DYN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 J N N ? 3 L N N ? 3 N N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 10 A ALA 10 1_555 M CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc2 A O GLN 293 A GLN 293 1_555 F CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc3 A O ASN 296 A ASN 296 1_555 F CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc4 A OD2 ASP 301 A ASP 301 1_555 F CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc5 F CA CA . A CA 601 1_555 B O ALA 10 E ALA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc6 B O GLN 293 E GLN 293 1_555 I CA CA . E CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc7 B O ASN 296 E ASN 296 1_555 I CA CA . E CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc8 B OD2 ASP 301 E ASP 301 1_555 I CA CA . E CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc9 I CA CA . E CA 601 1_555 C O ALA 10 D ALA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc10 C O GLN 293 D GLN 293 1_555 K CA CA . D CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc11 C O ASN 296 D ASN 296 1_555 K CA CA . D CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc12 C OD2 ASP 301 D ASP 301 1_555 K CA CA . D CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc13 K CA CA . D CA 601 1_555 E O ALA 10 C ALA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc14 D O ALA 10 B ALA 10 1_555 O CA CA . C CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc15 D O GLN 293 B GLN 293 1_555 M CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc16 D O ASN 296 B ASN 296 1_555 M CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc17 D OD2 ASP 301 B ASP 301 1_555 M CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc18 E O GLN 293 C GLN 293 1_555 O CA CA . C CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc19 E O ASN 296 C ASN 296 1_555 O CA CA . C CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc20 E OD2 ASP 301 C ASP 301 1_555 O CA CA . C CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? # _chem_comp.formula 'C7 H7 N O2' _chem_comp.formula_weight 137.136 _chem_comp.id PAB _chem_comp.mon_nstd_flag . _chem_comp.name '4-AMINOBENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1' O1' PAB doub 235 n n C1' O2' PAB sing 236 n n C1' C1 PAB sing 237 n n O2' HO2' PAB sing 238 n n C1 C2 PAB sing 239 n y C1 C6 PAB doub 240 n y C2 C3 PAB doub 241 n y C2 H2 PAB sing 242 n n C3 C4 PAB sing 243 n y C3 H3 PAB sing 244 n n C4 C5 PAB doub 245 n y C4 N4 PAB sing 246 n n C5 C6 PAB sing 247 n y C5 H5 PAB sing 248 n n C6 H6 PAB sing 249 n n N4 HN41 PAB sing 250 n n N4 HN42 PAB sing 251 n n # _atom_sites.entry_id 9DYN _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 CA A 1 601 501 CA CA . G 3 PAB A 1 602 502 PAB LIG . H 4 CL A 1 603 1 CL CL . I 2 CA E 1 601 501 CA CA . J 3 PAB E 1 602 502 PAB LIG . K 2 CA D 1 601 501 CA CA . L 3 PAB D 1 602 502 PAB LIG . M 2 CA B 1 601 501 CA CA . N 3 PAB B 1 602 502 PAB LIG . O 2 CA C 1 601 501 CA CA . P 3 PAB C 1 602 502 PAB LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1' PAB . . . L 3 148.751 173.911 138.511 1 58.66 ? C1' PAB 602 D 1 HETATM 2 O O1' PAB . . . L 3 148.35 174.807 139.269 1 59.52 ? O1' PAB 602 D 1 HETATM 3 O O2' PAB . . . L 3 148.465 172.731 138.773 1 59.24 ? O2' PAB 602 D 1 HETATM 4 C C1 PAB . . . L 3 149.568 174.249 137.278 1 59.24 ? C1 PAB 602 D 1 HETATM 5 C C2 PAB . . . L 3 150.686 173.508 136.972 1 61.21 ? C2 PAB 602 D 1 HETATM 6 C C3 PAB . . . L 3 151.419 173.823 135.848 1 60.04 ? C3 PAB 602 D 1 HETATM 7 C C4 PAB . . . L 3 151.032 174.859 135.03 1 60.69 ? C4 PAB 602 D 1 HETATM 8 C C5 PAB . . . L 3 149.914 175.595 135.339 1 56.08 ? C5 PAB 602 D 1 HETATM 9 C C6 PAB . . . L 3 149.182 175.29 136.463 1 56.14 ? C6 PAB 602 D 1 HETATM 10 N N4 PAB . . . L 3 151.819 175.176 133.855 1 62.8 ? N4 PAB 602 D 1 HETATM 11 H H2 PAB . . . L 3 150.992 172.69 137.612 1 58.65 ? H2 PAB 602 D 1 HETATM 12 H H3 PAB . . . L 3 152.301 173.252 135.6 1 58.37 ? H3 PAB 602 D 1 HETATM 13 H H5 PAB . . . L 3 149.609 176.415 134.7 1 57.51 ? H5 PAB 602 D 1 HETATM 14 H H6 PAB . . . L 3 148.298 175.866 136.705 1 57.69 ? H6 PAB 602 D 1 HETATM 15 H HN41 PAB . . . L 3 151.628 176.014 133.339 1 58.57 ? HN41 PAB 602 D 1 HETATM 16 H HN42 PAB . . . L 3 152.552 174.559 133.56 1 59.46 ? HN42 PAB 602 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 717 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 16 #