data_9E1D # _model_server_result.job_id AECeSuwimYmZBCCV2wLeDw _model_server_result.datetime_utc '2025-01-02 16:58:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9e1d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":5304}' # _entry.id 9E1D # _exptl.entry_id 9E1D _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 194.191 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description enprofylline _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9E1D _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9E1D _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 L N N ? 6 P N N ? 6 T N N ? 6 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2233 A CYS 2233 1_555 A SG CYS 2237 A CYS 2237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? disulf ? disulf2 A SG CYS 2702 A CYS 2702 1_555 A SG CYS 2704 A CYS 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 3170 A CYS 3170 1_555 A SG CYS 3240 A CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 4876 A CYS 4876 1_555 A SG CYS 4882 A CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 F SG CYS 2233 B CYS 2233 1_555 F SG CYS 2237 B CYS 2237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? disulf ? disulf6 F SG CYS 2702 B CYS 2702 1_555 F SG CYS 2704 B CYS 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 F SG CYS 3170 B CYS 3170 1_555 F SG CYS 3240 B CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 F SG CYS 4876 B CYS 4876 1_555 F SG CYS 4882 B CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 G SG CYS 2233 D CYS 2233 1_555 G SG CYS 2237 D CYS 2237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? disulf ? disulf10 G SG CYS 2702 D CYS 2702 1_555 G SG CYS 2704 D CYS 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 G SG CYS 3170 D CYS 3170 1_555 G SG CYS 3240 D CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf12 G SG CYS 4876 D CYS 4876 1_555 G SG CYS 4882 D CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf13 H SG CYS 2233 C CYS 2233 1_555 H SG CYS 2237 C CYS 2237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? disulf ? disulf14 H SG CYS 2702 C CYS 2702 1_555 H SG CYS 2704 C CYS 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf15 H SG CYS 3170 C CYS 3170 1_555 H SG CYS 3240 C CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf16 H SG CYS 4876 C CYS 4876 1_555 H SG CYS 4882 C CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A OE1 GLU 3893 A GLU 3893 1_555 J CA CA . A CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc2 A OE2 GLU 3893 A GLU 3893 1_555 J CA CA . A CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc3 A OE1 GLU 3967 A GLU 3967 1_555 J CA CA . A CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc4 A SG CYS 4958 A CYS 4958 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc5 A SG CYS 4961 A CYS 4961 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc6 A NE2 HIS 4978 A HIS 4978 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc7 A ND1 HIS 4983 A HIS 4983 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc8 A O THR 5001 A THR 5001 1_555 J CA CA . A CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc9 F OE1 GLU 3893 B GLU 3893 1_555 N CA CA . B CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc10 F OE2 GLU 3893 B GLU 3893 1_555 N CA CA . B CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc11 F OE1 GLU 3967 B GLU 3967 1_555 N CA CA . B CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc12 F SG CYS 4958 B CYS 4958 1_555 O ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc13 F SG CYS 4961 B CYS 4961 1_555 O ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc14 F NE2 HIS 4978 B HIS 4978 1_555 O ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc15 F ND1 HIS 4983 B HIS 4983 1_555 O ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc16 F O THR 5001 B THR 5001 1_555 N CA CA . B CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc17 G OE1 GLU 3893 D GLU 3893 1_555 R CA CA . D CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc18 G OE2 GLU 3893 D GLU 3893 1_555 R CA CA . D CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc19 G OE1 GLU 3967 D GLU 3967 1_555 R CA CA . D CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc20 G SG CYS 4958 D CYS 4958 1_555 S ZN ZN . D ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc21 G SG CYS 4961 D CYS 4961 1_555 S ZN ZN . D ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc22 G NE2 HIS 4978 D HIS 4978 1_555 S ZN ZN . D ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc23 G ND1 HIS 4983 D HIS 4983 1_555 S ZN ZN . D ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc24 G O THR 5001 D THR 5001 1_555 R CA CA . D CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc25 H OE1 GLU 3893 C GLU 3893 1_555 V CA CA . C CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc26 H OE2 GLU 3893 C GLU 3893 1_555 V CA CA . C CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc27 H OE1 GLU 3967 C GLU 3967 1_555 V CA CA . C CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc28 H SG CYS 4958 C CYS 4958 1_555 W ZN ZN . C ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc29 H SG CYS 4961 C CYS 4961 1_555 W ZN ZN . C ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc30 H NE2 HIS 4978 C HIS 4978 1_555 W ZN ZN . C ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc31 H ND1 HIS 4983 C HIS 4983 1_555 W ZN ZN . C ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc32 H O THR 5001 C THR 5001 1_555 V CA CA . C CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? # _chem_comp.formula 'C8 H10 N4 O2' _chem_comp.formula_weight 194.191 _chem_comp.id A1BD3 _chem_comp.mon_nstd_flag . _chem_comp.name enprofylline _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 A1BD3 doub 1 n n N1 C2 A1BD3 sing 2 n y N1 C3 A1BD3 sing 3 n y C1 C2 A1BD3 sing 4 n n C1 N4 A1BD3 sing 5 n n C2 C4 A1BD3 doub 6 n y C3 N2 A1BD3 doub 7 n y N4 C8 A1BD3 sing 8 n n N2 C4 A1BD3 sing 9 n y C4 N3 A1BD3 sing 10 n n C8 N3 A1BD3 sing 11 n n C8 O2 A1BD3 doub 12 n n N3 C5 A1BD3 sing 13 n n C5 C6 A1BD3 sing 14 n n C6 C7 A1BD3 sing 15 n n N1 H1 A1BD3 sing 16 n n C5 H2 A1BD3 sing 17 n n C5 H3 A1BD3 sing 18 n n C6 H4 A1BD3 sing 19 n n C6 H5 A1BD3 sing 20 n n C7 H6 A1BD3 sing 21 n n C7 H7 A1BD3 sing 22 n n C7 H8 A1BD3 sing 23 n n C3 H9 A1BD3 sing 24 n n N4 H11 A1BD3 sing 25 n n # _atom_sites.entry_id 9E1D _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ATP A 1 5301 5301 ATP ATP . J 4 CA A 1 5302 5302 CA CA . K 5 ZN A 1 5303 5303 ZN ZN . L 6 A1BD3 A 1 5304 5304 A1BD3 LIG . M 3 ATP B 1 5301 5301 ATP ATP . N 4 CA B 1 5302 5302 CA CA . O 5 ZN B 1 5303 5303 ZN ZN . P 6 A1BD3 B 1 5304 5304 A1BD3 LIG . Q 3 ATP D 1 5301 5301 ATP ATP . R 4 CA D 1 5302 5302 CA CA . S 5 ZN D 1 5303 5303 ZN ZN . T 6 A1BD3 D 1 5304 5304 A1BD3 LIG . U 3 ATP C 1 5301 5301 ATP ATP . V 4 CA C 1 5302 5302 CA CA . W 5 ZN C 1 5303 5303 ZN ZN . X 6 A1BD3 C 1 5304 5304 A1BD3 LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A1BD3 . . . P 6 228.994 254.118 247.591 1 63.48 ? N1 A1BD3 5304 B 1 HETATM 2 N N3 A1BD3 . . . P 6 229.075 251.422 250.18 1 63.48 ? N3 A1BD3 5304 B 1 HETATM 3 C C4 A1BD3 . . . P 6 229.328 252.577 249.331 1 63.48 ? C4 A1BD3 5304 B 1 HETATM 4 C C5 A1BD3 . . . P 6 229.971 251.103 251.284 1 63.48 ? C5 A1BD3 5304 B 1 HETATM 5 C C6 A1BD3 . . . P 6 229.458 251.529 252.66 1 63.48 ? C6 A1BD3 5304 B 1 HETATM 6 C C7 A1BD3 . . . P 6 229.883 250.521 253.728 1 63.48 ? C7 A1BD3 5304 B 1 HETATM 7 C C8 A1BD3 . . . P 6 227.91 250.551 249.881 1 63.48 ? C8 A1BD3 5304 B 1 HETATM 8 C C1 A1BD3 . . . P 6 227.293 252.039 247.923 1 63.48 ? C1 A1BD3 5304 B 1 HETATM 9 C C2 A1BD3 . . . P 6 228.474 252.894 248.237 1 63.48 ? C2 A1BD3 5304 B 1 HETATM 10 C C3 A1BD3 . . . P 6 230.067 254.404 248.33 1 63.48 ? C3 A1BD3 5304 B 1 HETATM 11 N N2 A1BD3 . . . P 6 230.241 253.539 249.295 1 63.48 ? N2 A1BD3 5304 B 1 HETATM 12 N N4 A1BD3 . . . P 6 227.016 250.878 248.741 1 63.48 ? N4 A1BD3 5304 B 1 HETATM 13 O O1 A1BD3 . . . P 6 226.459 252.359 246.847 1 63.48 ? O1 A1BD3 5304 B 1 HETATM 14 O O2 A1BD3 . . . P 6 227.649 249.43 250.676 1 63.48 ? O2 A1BD3 5304 B 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 384 _model_server_stats.query_time_ms 475 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 14 #