data_9E1G # _model_server_result.job_id H6YHiyqRKnQB_QGsneHqCw _model_server_result.datetime_utc '2024-11-28 05:48:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9e1g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":5301}' # _entry.id 9E1G # _exptl.entry_id 9E1G _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9E1G _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9E1G _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 M N N ? 3 Q N N ? 3 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3170 A CYS 3170 1_555 A SG CYS 3240 A CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 4876 A CYS 4876 1_555 A SG CYS 4882 A CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 F SG CYS 3170 B CYS 3170 1_555 F SG CYS 3240 B CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 F SG CYS 4876 B CYS 4876 1_555 F SG CYS 4882 B CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 G SG CYS 3170 D CYS 3170 1_555 G SG CYS 3240 D CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf6 G SG CYS 4876 D CYS 4876 1_555 G SG CYS 4882 D CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf7 H SG CYS 3170 C CYS 3170 1_555 H SG CYS 3240 C CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf8 H SG CYS 4876 C CYS 4876 1_555 H SG CYS 4882 C CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc1 A OE2 GLU 3893 A GLU 3893 1_555 J CA CA . A CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc2 A OE1 GLU 3967 A GLU 3967 1_555 J CA CA . A CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc3 A OE2 GLU 3967 A GLU 3967 1_555 J CA CA . A CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc4 A SG CYS 4958 A CYS 4958 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc5 A SG CYS 4961 A CYS 4961 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc6 A NE2 HIS 4978 A HIS 4978 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc7 A ND1 HIS 4983 A HIS 4983 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc8 A O THR 5001 A THR 5001 1_555 J CA CA . A CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc9 F OE2 GLU 3893 B GLU 3893 1_555 N CA CA . B CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc10 F OE1 GLU 3967 B GLU 3967 1_555 N CA CA . B CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc11 F OE2 GLU 3967 B GLU 3967 1_555 N CA CA . B CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc12 F SG CYS 4958 B CYS 4958 1_555 O ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc13 F SG CYS 4961 B CYS 4961 1_555 O ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc14 F NE2 HIS 4978 B HIS 4978 1_555 O ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc15 F ND1 HIS 4983 B HIS 4983 1_555 O ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc16 F O THR 5001 B THR 5001 1_555 N CA CA . B CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc17 G OE2 GLU 3893 D GLU 3893 1_555 R CA CA . D CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc18 G OE1 GLU 3967 D GLU 3967 1_555 R CA CA . D CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc19 G OE2 GLU 3967 D GLU 3967 1_555 R CA CA . D CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc20 G SG CYS 4958 D CYS 4958 1_555 S ZN ZN . D ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc21 G SG CYS 4961 D CYS 4961 1_555 S ZN ZN . D ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc22 G NE2 HIS 4978 D HIS 4978 1_555 S ZN ZN . D ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc23 G ND1 HIS 4983 D HIS 4983 1_555 S ZN ZN . D ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc24 G O THR 5001 D THR 5001 1_555 R CA CA . D CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc25 H OE2 GLU 3893 C GLU 3893 1_555 V CA CA . C CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc26 H OE1 GLU 3967 C GLU 3967 1_555 V CA CA . C CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc27 H OE2 GLU 3967 C GLU 3967 1_555 V CA CA . C CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc28 H SG CYS 4958 C CYS 4958 1_555 W ZN ZN . C ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc29 H SG CYS 4961 C CYS 4961 1_555 W ZN ZN . C ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc30 H NE2 HIS 4978 C HIS 4978 1_555 W ZN ZN . C ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc31 H ND1 HIS 4983 C HIS 4983 1_555 W ZN ZN . C ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc32 H O THR 5001 C THR 5001 1_555 V CA CA . C CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 86 n n PG O2G ATP sing 87 n n PG O3G ATP sing 88 n n PG O3B ATP sing 89 n n O2G HOG2 ATP sing 90 n n O3G HOG3 ATP sing 91 n n PB O1B ATP doub 92 n n PB O2B ATP sing 93 n n PB O3B ATP sing 94 n n PB O3A ATP sing 95 n n O2B HOB2 ATP sing 96 n n PA O1A ATP doub 97 n n PA O2A ATP sing 98 n n PA O3A ATP sing 99 n n PA O5' ATP sing 100 n n O2A HOA2 ATP sing 101 n n O5' C5' ATP sing 102 n n C5' C4' ATP sing 103 n n C5' "H5'1" ATP sing 104 n n C5' "H5'2" ATP sing 105 n n C4' O4' ATP sing 106 n n C4' C3' ATP sing 107 n n C4' H4' ATP sing 108 n n O4' C1' ATP sing 109 n n C3' O3' ATP sing 110 n n C3' C2' ATP sing 111 n n C3' H3' ATP sing 112 n n O3' HO3' ATP sing 113 n n C2' O2' ATP sing 114 n n C2' C1' ATP sing 115 n n C2' H2' ATP sing 116 n n O2' HO2' ATP sing 117 n n C1' N9 ATP sing 118 n n C1' H1' ATP sing 119 n n N9 C8 ATP sing 120 n y N9 C4 ATP sing 121 n y C8 N7 ATP doub 122 n y C8 H8 ATP sing 123 n n N7 C5 ATP sing 124 n y C5 C6 ATP sing 125 n y C5 C4 ATP doub 126 n y C6 N6 ATP sing 127 n n C6 N1 ATP doub 128 n y N6 HN61 ATP sing 129 n n N6 HN62 ATP sing 130 n n N1 C2 ATP sing 131 n y C2 N3 ATP doub 132 n y C2 H2 ATP sing 133 n n N3 C4 ATP sing 134 n y # _atom_sites.entry_id 9E1G _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ATP A 1 5301 5301 ATP ATP . J 4 CA A 1 5302 5302 CA CA . K 5 ZN A 1 5303 5303 ZN ZN . L 6 141 A 1 5304 5304 141 141 . M 3 ATP B 1 5301 5301 ATP ATP . N 4 CA B 1 5302 5302 CA CA . O 5 ZN B 1 5303 5303 ZN ZN . P 6 141 B 1 5304 5304 141 141 . Q 3 ATP D 1 5301 5301 ATP ATP . R 4 CA D 1 5302 5302 CA CA . S 5 ZN D 1 5303 5303 ZN ZN . T 6 141 D 1 5304 5304 141 141 . U 3 ATP C 1 5301 5301 ATP ATP . V 4 CA C 1 5302 5302 CA CA . W 5 ZN C 1 5303 5303 ZN ZN . X 6 141 C 1 5304 5304 141 141 . Y 7 HOH A 1 5401 5305 HOH HOH . Z 7 HOH B 1 5401 5305 HOH HOH . AA 7 HOH D 1 5401 5305 HOH HOH . BA 7 HOH C 1 5401 5305 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . M 3 237.712 226.227 256.966 1 122.3 ? PG ATP 5301 B 1 HETATM 2 O O1G ATP . . . M 3 238.512 226.68 255.795 1 107.99 ? O1G ATP 5301 B 1 HETATM 3 O O2G ATP . . . M 3 237.905 224.75 257.308 1 112.9 ? O2G ATP 5301 B 1 HETATM 4 O O3G ATP . . . M 3 237.94 227.068 258.224 1 114.55 ? O3G ATP 5301 B 1 HETATM 5 P PB ATP . . . M 3 234.809 225.533 256.799 1 123.89 ? PB ATP 5301 B 1 HETATM 6 O O1B ATP . . . M 3 234.971 224.144 256.332 1 113.26 ? O1B ATP 5301 B 1 HETATM 7 O O2B ATP . . . M 3 234.292 225.709 258.221 1 118.32 ? O2B ATP 5301 B 1 HETATM 8 O O3B ATP . . . M 3 236.153 226.368 256.669 1 124.06 ? O3B ATP 5301 B 1 HETATM 9 P PA ATP . . . M 3 234.021 227.369 254.647 1 114.3 ? PA ATP 5301 B 1 HETATM 10 O O1A ATP . . . M 3 235.362 227.265 254.039 1 109.6 ? O1A ATP 5301 B 1 HETATM 11 O O2A ATP . . . M 3 233.644 228.751 255.169 1 112.72 ? O2A ATP 5301 B 1 HETATM 12 O O3A ATP . . . M 3 233.849 226.364 255.844 1 111.96 ? O3A ATP 5301 B 1 HETATM 13 O O5' ATP . . . M 3 232.896 226.887 253.655 1 97.68 ? O5' ATP 5301 B 1 HETATM 14 C C5' ATP . . . M 3 231.527 226.764 254.09 1 88.52 ? C5' ATP 5301 B 1 HETATM 15 C C4' ATP . . . M 3 230.784 225.863 253.143 1 80.06 ? C4' ATP 5301 B 1 HETATM 16 O O4' ATP . . . M 3 229.833 226.634 252.396 1 75.82 ? O4' ATP 5301 B 1 HETATM 17 C C3' ATP . . . M 3 231.632 225.183 252.077 1 76.78 ? C3' ATP 5301 B 1 HETATM 18 O O3' ATP . . . M 3 232.113 223.931 252.547 1 90.99 ? O3' ATP 5301 B 1 HETATM 19 C C2' ATP . . . M 3 230.654 225.005 250.904 1 68.98 ? C2' ATP 5301 B 1 HETATM 20 O O2' ATP . . . M 3 230.302 223.64 250.727 1 76.99 ? O2' ATP 5301 B 1 HETATM 21 C C1' ATP . . . M 3 229.426 225.822 251.324 1 68.33 ? C1' ATP 5301 B 1 HETATM 22 N N9 ATP . . . M 3 228.895 226.679 250.276 1 59.46 ? N9 ATP 5301 B 1 HETATM 23 C C8 ATP . . . M 3 227.709 226.534 249.612 1 58.97 ? C8 ATP 5301 B 1 HETATM 24 N N7 ATP . . . M 3 227.483 227.457 248.712 1 56.79 ? N7 ATP 5301 B 1 HETATM 25 C C5 ATP . . . M 3 228.601 228.27 248.79 1 51.46 ? C5 ATP 5301 B 1 HETATM 26 C C6 ATP . . . M 3 228.982 229.428 248.093 1 55.09 ? C6 ATP 5301 B 1 HETATM 27 N N6 ATP . . . M 3 228.243 229.998 247.138 1 58.09 ? N6 ATP 5301 B 1 HETATM 28 N N1 ATP . . . M 3 230.161 229.995 248.415 1 56.94 ? N1 ATP 5301 B 1 HETATM 29 C C2 ATP . . . M 3 230.907 229.43 249.366 1 55.63 ? C2 ATP 5301 B 1 HETATM 30 N N3 ATP . . . M 3 230.653 228.34 250.089 1 60.43 ? N3 ATP 5301 B 1 HETATM 31 C C4 ATP . . . M 3 229.478 227.804 249.752 1 55.31 ? C4 ATP 5301 B 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 520 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 31 #