data_9E1G
#
_model_server_result.job_id            wlWJlgmpb0O5N0mLat3keQ 
_model_server_result.datetime_utc      '2024-11-28 05:34:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9e1g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":5301}' 
#
_entry.id    9E1G 
#
_exptl.entry_id    9E1G 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9E1G 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9E1G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 M N N 
? 3 Q N N 
? 3 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3170 A CYS 3170 1_555 A SG CYS 3240 A CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf2 A SG CYS 4876 A CYS 4876 1_555 A SG CYS 4882 A CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf3 F SG CYS 3170 B CYS 3170 1_555 F SG CYS 3240 B CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf4 F SG CYS 4876 B CYS 4876 1_555 F SG CYS 4882 B CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf5 G SG CYS 3170 D CYS 3170 1_555 G SG CYS 3240 D CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf6 G SG CYS 4876 D CYS 4876 1_555 G SG CYS 4882 D CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf7 H SG CYS 3170 C CYS 3170 1_555 H SG CYS 3240 C CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf8 H SG CYS 4876 C CYS 4876 1_555 H SG CYS 4882 C CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc1 A OE2 GLU 3893 A GLU 3893 1_555 J CA CA . A CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc2 A OE1 GLU 3967 A GLU 3967 1_555 J CA CA . A CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? 
metalc ? metalc3 A OE2 GLU 3967 A GLU 3967 1_555 J CA CA . A CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc4 A SG CYS 4958 A CYS 4958 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc5 A SG CYS 4961 A CYS 4961 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc6 A NE2 HIS 4978 A HIS 4978 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc7 A ND1 HIS 4983 A HIS 4983 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc8 A O THR 5001 A THR 5001 1_555 J CA CA . A CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc9 F OE2 GLU 3893 B GLU 3893 1_555 N CA CA . B CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc10 F OE1 GLU 3967 B GLU 3967 1_555 N CA CA . B CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? 
metalc ? metalc11 F OE2 GLU 3967 B GLU 3967 1_555 N CA CA . B CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc12 F SG CYS 4958 B CYS 4958 1_555 O ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc13 F SG CYS 4961 B CYS 4961 1_555 O ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc14 F NE2 HIS 4978 B HIS 4978 1_555 O ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc15 F ND1 HIS 4983 B HIS 4983 1_555 O ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc16 F O THR 5001 B THR 5001 1_555 N CA CA . B CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc17 G OE2 GLU 3893 D GLU 3893 1_555 R CA CA . D CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc18 G OE1 GLU 3967 D GLU 3967 1_555 R CA CA . D CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? 
metalc ? metalc19 G OE2 GLU 3967 D GLU 3967 1_555 R CA CA . D CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc20 G SG CYS 4958 D CYS 4958 1_555 S ZN ZN . D ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc21 G SG CYS 4961 D CYS 4961 1_555 S ZN ZN . D ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc22 G NE2 HIS 4978 D HIS 4978 1_555 S ZN ZN . D ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc23 G ND1 HIS 4983 D HIS 4983 1_555 S ZN ZN . D ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc24 G O THR 5001 D THR 5001 1_555 R CA CA . D CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc25 H OE2 GLU 3893 C GLU 3893 1_555 V CA CA . C CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc26 H OE1 GLU 3967 C GLU 3967 1_555 V CA CA . C CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? 
metalc ? metalc27 H OE2 GLU 3967 C GLU 3967 1_555 V CA CA . C CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc28 H SG CYS 4958 C CYS 4958 1_555 W ZN ZN . C ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc29 H SG CYS 4961 C CYS 4961 1_555 W ZN ZN . C ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc30 H NE2 HIS 4978 C HIS 4978 1_555 W ZN ZN . C ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc31 H ND1 HIS 4983 C HIS 4983 1_555 W ZN ZN . C ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc32 H O THR 5001 C THR 5001 1_555 V CA CA . C CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 86 n n 
PG O2G ATP sing 87 n n 
PG O3G ATP sing 88 n n 
PG O3B ATP sing 89 n n 
O2G HOG2 ATP sing 90 n n 
O3G HOG3 ATP sing 91 n n 
PB O1B ATP doub 92 n n 
PB O2B ATP sing 93 n n 
PB O3B ATP sing 94 n n 
PB O3A ATP sing 95 n n 
O2B HOB2 ATP sing 96 n n 
PA O1A ATP doub 97 n n 
PA O2A ATP sing 98 n n 
PA O3A ATP sing 99 n n 
PA O5' ATP sing 100 n n 
O2A HOA2 ATP sing 101 n n 
O5' C5' ATP sing 102 n n 
C5' C4' ATP sing 103 n n 
C5' "H5'1" ATP sing 104 n n 
C5' "H5'2" ATP sing 105 n n 
C4' O4' ATP sing 106 n n 
C4' C3' ATP sing 107 n n 
C4' H4' ATP sing 108 n n 
O4' C1' ATP sing 109 n n 
C3' O3' ATP sing 110 n n 
C3' C2' ATP sing 111 n n 
C3' H3' ATP sing 112 n n 
O3' HO3' ATP sing 113 n n 
C2' O2' ATP sing 114 n n 
C2' C1' ATP sing 115 n n 
C2' H2' ATP sing 116 n n 
O2' HO2' ATP sing 117 n n 
C1' N9 ATP sing 118 n n 
C1' H1' ATP sing 119 n n 
N9 C8 ATP sing 120 n y 
N9 C4 ATP sing 121 n y 
C8 N7 ATP doub 122 n y 
C8 H8 ATP sing 123 n n 
N7 C5 ATP sing 124 n y 
C5 C6 ATP sing 125 n y 
C5 C4 ATP doub 126 n y 
C6 N6 ATP sing 127 n n 
C6 N1 ATP doub 128 n y 
N6 HN61 ATP sing 129 n n 
N6 HN62 ATP sing 130 n n 
N1 C2 ATP sing 131 n y 
C2 N3 ATP doub 132 n y 
C2 H2 ATP sing 133 n n 
N3 C4 ATP sing 134 n y 
#
_atom_sites.entry_id                     9E1G 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 ATP A 1 5301 5301 ATP ATP . 
J 4 CA A 1 5302 5302 CA CA . 
K 5 ZN A 1 5303 5303 ZN ZN . 
L 6 141 A 1 5304 5304 141 141 . 
M 3 ATP B 1 5301 5301 ATP ATP . 
N 4 CA B 1 5302 5302 CA CA . 
O 5 ZN B 1 5303 5303 ZN ZN . 
P 6 141 B 1 5304 5304 141 141 . 
Q 3 ATP D 1 5301 5301 ATP ATP . 
R 4 CA D 1 5302 5302 CA CA . 
S 5 ZN D 1 5303 5303 ZN ZN . 
T 6 141 D 1 5304 5304 141 141 . 
U 3 ATP C 1 5301 5301 ATP ATP . 
V 4 CA C 1 5302 5302 CA CA . 
W 5 ZN C 1 5303 5303 ZN ZN . 
X 6 141 C 1 5304 5304 141 141 . 
Y 7 HOH A 1 5401 5305 HOH HOH . 
Z 7 HOH B 1 5401 5305 HOH HOH . 
AA 7 HOH D 1 5401 5305 HOH HOH . 
BA 7 HOH C 1 5401 5305 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . Q 3 190.578 202.063 256.973 1 122.3 ? PG ATP 5301 D 1 
HETATM 2 O O1G ATP . . . Q 3 189.778 201.61 255.801 1 107.99 ? O1G ATP 5301 D 1 
HETATM 3 O O2G ATP . . . Q 3 190.385 203.54 257.315 1 112.9 ? O2G ATP 5301 D 1 
HETATM 4 O O3G ATP . . . Q 3 190.349 201.222 258.231 1 114.55 ? O3G ATP 5301 D 1 
HETATM 5 P PB ATP . . . Q 3 193.48 202.757 256.805 1 123.89 ? PB ATP 5301 D 1 
HETATM 6 O O1B ATP . . . Q 3 193.319 204.147 256.339 1 113.26 ? O1B ATP 5301 D 1 
HETATM 7 O O2B ATP . . . Q 3 193.998 202.581 258.228 1 118.32 ? O2B ATP 5301 D 1 
HETATM 8 O O3B ATP . . . Q 3 192.136 201.923 256.675 1 124.06 ? O3B ATP 5301 D 1 
HETATM 9 P PA ATP . . . Q 3 194.268 200.922 254.654 1 114.3 ? PA ATP 5301 D 1 
HETATM 10 O O1A ATP . . . Q 3 192.928 201.025 254.045 1 109.6 ? O1A ATP 5301 D 1 
HETATM 11 O O2A ATP . . . Q 3 194.645 199.54 255.176 1 112.72 ? O2A ATP 5301 D 1 
HETATM 12 O O3A ATP . . . Q 3 194.44 201.926 255.85 1 111.96 ? O3A ATP 5301 D 1 
HETATM 13 O O5' ATP . . . Q 3 195.394 201.404 253.662 1 97.68 ? O5' ATP 5301 D 1 
HETATM 14 C C5' ATP . . . Q 3 196.762 201.527 254.097 1 88.52 ? C5' ATP 5301 D 1 
HETATM 15 C C4' ATP . . . Q 3 197.505 202.427 253.15 1 80.06 ? C4' ATP 5301 D 1 
HETATM 16 O O4' ATP . . . Q 3 198.457 201.656 252.403 1 75.82 ? O4' ATP 5301 D 1 
HETATM 17 C C3' ATP . . . Q 3 196.658 203.108 252.083 1 76.78 ? C3' ATP 5301 D 1 
HETATM 18 O O3' ATP . . . Q 3 196.177 204.359 252.554 1 90.99 ? O3' ATP 5301 D 1 
HETATM 19 C C2' ATP . . . Q 3 197.636 203.286 250.91 1 68.98 ? C2' ATP 5301 D 1 
HETATM 20 O O2' ATP . . . Q 3 197.988 204.65 250.734 1 76.99 ? O2' ATP 5301 D 1 
HETATM 21 C C1' ATP . . . Q 3 198.863 202.468 251.331 1 68.33 ? C1' ATP 5301 D 1 
HETATM 22 N N9 ATP . . . Q 3 199.395 201.611 250.282 1 59.46 ? N9 ATP 5301 D 1 
HETATM 23 C C8 ATP . . . Q 3 200.581 201.757 249.618 1 58.97 ? C8 ATP 5301 D 1 
HETATM 24 N N7 ATP . . . Q 3 200.806 200.834 248.719 1 56.79 ? N7 ATP 5301 D 1 
HETATM 25 C C5 ATP . . . Q 3 199.689 200.021 248.797 1 51.46 ? C5 ATP 5301 D 1 
HETATM 26 C C6 ATP . . . Q 3 199.308 198.862 248.1 1 55.09 ? C6 ATP 5301 D 1 
HETATM 27 N N6 ATP . . . Q 3 200.047 198.293 247.145 1 58.09 ? N6 ATP 5301 D 1 
HETATM 28 N N1 ATP . . . Q 3 198.129 198.296 248.422 1 56.94 ? N1 ATP 5301 D 1 
HETATM 29 C C2 ATP . . . Q 3 197.383 198.861 249.372 1 55.63 ? C2 ATP 5301 D 1 
HETATM 30 N N3 ATP . . . Q 3 197.637 199.951 250.096 1 60.43 ? N3 ATP 5301 D 1 
HETATM 31 C C4 ATP . . . Q 3 198.812 200.487 249.759 1 55.31 ? C4 ATP 5301 D 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    187 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#