data_9E1G # _model_server_result.job_id jH6VGKjhDdyYZworKB4aeA _model_server_result.datetime_utc '2024-11-28 05:32:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9e1g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":5304}' # _entry.id 9E1G # _exptl.entry_id 9E1G _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 152.111 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Oxypurinol _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9E1G _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9E1G _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 L N N ? 6 P N N ? 6 T N N ? 6 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3170 A CYS 3170 1_555 A SG CYS 3240 A CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 4876 A CYS 4876 1_555 A SG CYS 4882 A CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 F SG CYS 3170 B CYS 3170 1_555 F SG CYS 3240 B CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 F SG CYS 4876 B CYS 4876 1_555 F SG CYS 4882 B CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 G SG CYS 3170 D CYS 3170 1_555 G SG CYS 3240 D CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf6 G SG CYS 4876 D CYS 4876 1_555 G SG CYS 4882 D CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf7 H SG CYS 3170 C CYS 3170 1_555 H SG CYS 3240 C CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf8 H SG CYS 4876 C CYS 4876 1_555 H SG CYS 4882 C CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc1 A OE2 GLU 3893 A GLU 3893 1_555 J CA CA . A CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc2 A OE1 GLU 3967 A GLU 3967 1_555 J CA CA . A CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc3 A OE2 GLU 3967 A GLU 3967 1_555 J CA CA . A CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc4 A SG CYS 4958 A CYS 4958 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc5 A SG CYS 4961 A CYS 4961 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc6 A NE2 HIS 4978 A HIS 4978 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc7 A ND1 HIS 4983 A HIS 4983 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc8 A O THR 5001 A THR 5001 1_555 J CA CA . A CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc9 F OE2 GLU 3893 B GLU 3893 1_555 N CA CA . B CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc10 F OE1 GLU 3967 B GLU 3967 1_555 N CA CA . B CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc11 F OE2 GLU 3967 B GLU 3967 1_555 N CA CA . B CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc12 F SG CYS 4958 B CYS 4958 1_555 O ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc13 F SG CYS 4961 B CYS 4961 1_555 O ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc14 F NE2 HIS 4978 B HIS 4978 1_555 O ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc15 F ND1 HIS 4983 B HIS 4983 1_555 O ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc16 F O THR 5001 B THR 5001 1_555 N CA CA . B CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc17 G OE2 GLU 3893 D GLU 3893 1_555 R CA CA . D CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc18 G OE1 GLU 3967 D GLU 3967 1_555 R CA CA . D CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc19 G OE2 GLU 3967 D GLU 3967 1_555 R CA CA . D CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc20 G SG CYS 4958 D CYS 4958 1_555 S ZN ZN . D ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc21 G SG CYS 4961 D CYS 4961 1_555 S ZN ZN . D ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc22 G NE2 HIS 4978 D HIS 4978 1_555 S ZN ZN . D ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc23 G ND1 HIS 4983 D HIS 4983 1_555 S ZN ZN . D ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc24 G O THR 5001 D THR 5001 1_555 R CA CA . D CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc25 H OE2 GLU 3893 C GLU 3893 1_555 V CA CA . C CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc26 H OE1 GLU 3967 C GLU 3967 1_555 V CA CA . C CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc27 H OE2 GLU 3967 C GLU 3967 1_555 V CA CA . C CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc28 H SG CYS 4958 C CYS 4958 1_555 W ZN ZN . C ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc29 H SG CYS 4961 C CYS 4961 1_555 W ZN ZN . C ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc30 H NE2 HIS 4978 C HIS 4978 1_555 W ZN ZN . C ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc31 H ND1 HIS 4983 C HIS 4983 1_555 W ZN ZN . C ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc32 H O THR 5001 C THR 5001 1_555 V CA CA . C CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? # _chem_comp.formula 'C5 H4 N4 O2' _chem_comp.formula_weight 152.111 _chem_comp.id 141 _chem_comp.mon_nstd_flag . _chem_comp.name Oxypurinol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Alloxanthine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N8 C7 141 sing 1 n n N8 N9 141 sing 2 n n C7 C5 141 doub 3 n n N9 C4 141 sing 4 n n C5 C4 141 sing 5 n n C5 C6 141 sing 6 n n C4 N3 141 doub 7 n n C6 O6 141 doub 8 n n C6 N1 141 sing 9 n n N3 C2 141 sing 10 n n N1 C2 141 sing 11 n n C2 O2 141 doub 12 n n C7 H1 141 sing 13 n n N8 H2 141 sing 14 n n N1 H4 141 sing 15 n n N9 H5 141 sing 16 n n # _atom_sites.entry_id 9E1G _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ATP A 1 5301 5301 ATP ATP . J 4 CA A 1 5302 5302 CA CA . K 5 ZN A 1 5303 5303 ZN ZN . L 6 141 A 1 5304 5304 141 141 . M 3 ATP B 1 5301 5301 ATP ATP . N 4 CA B 1 5302 5302 CA CA . O 5 ZN B 1 5303 5303 ZN ZN . P 6 141 B 1 5304 5304 141 141 . Q 3 ATP D 1 5301 5301 ATP ATP . R 4 CA D 1 5302 5302 CA CA . S 5 ZN D 1 5303 5303 ZN ZN . T 6 141 D 1 5304 5304 141 141 . U 3 ATP C 1 5301 5301 ATP ATP . V 4 CA C 1 5302 5302 CA CA . W 5 ZN C 1 5303 5303 ZN ZN . X 6 141 C 1 5304 5304 141 141 . Y 7 HOH A 1 5401 5305 HOH HOH . Z 7 HOH B 1 5401 5305 HOH HOH . AA 7 HOH D 1 5401 5305 HOH HOH . BA 7 HOH C 1 5401 5305 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 141 . . . P 6 228.854 249.507 249.294 1 20 ? O6 141 5304 B 1 HETATM 2 C C6 141 . . . P 6 229.087 250.58 248.72 1 20 ? C6 141 5304 B 1 HETATM 3 C C5 141 . . . P 6 230.033 251.563 249.13 1 20 ? C5 141 5304 B 1 HETATM 4 C C7 141 . . . P 6 230.928 251.678 250.185 1 20 ? C7 141 5304 B 1 HETATM 5 N N8 141 . . . P 6 231.569 252.858 250.052 1 20 ? N8 141 5304 B 1 HETATM 6 N N9 141 . . . P 6 231.105 253.496 248.937 1 20 ? N9 141 5304 B 1 HETATM 7 C C4 141 . . . P 6 230.164 252.705 248.368 1 20 ? C4 141 5304 B 1 HETATM 8 N N3 141 . . . P 6 229.461 252.96 247.26 1 20 ? N3 141 5304 B 1 HETATM 9 O O2 141 . . . P 6 227.909 252.197 245.894 1 20 ? O2 141 5304 B 1 HETATM 10 C C2 141 . . . P 6 228.589 252.037 246.893 1 20 ? C2 141 5304 B 1 HETATM 11 N N1 141 . . . P 6 228.396 250.902 247.574 1 20 ? N1 141 5304 B 1 # _model_server_stats.io_time_ms 104 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 588 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 11 #