data_9E1H
#
_model_server_result.job_id            Am6JffpFsoi98K8I35S9YQ 
_model_server_result.datetime_utc      '2024-11-28 05:43:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9e1h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":5301}' 
#
_entry.id    9E1H 
#
_exptl.entry_id    9E1H 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9E1H 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9E1H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 M N N 
? 3 Q N N 
? 3 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3170 A CYS 3170 1_555 A SG CYS 3240 A CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 4876 A CYS 4876 1_555 A SG CYS 4882 A CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 F SG CYS 3170 B CYS 3170 1_555 F SG CYS 3240 B CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 F SG CYS 4876 B CYS 4876 1_555 F SG CYS 4882 B CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf5 G SG CYS 3170 D CYS 3170 1_555 G SG CYS 3240 D CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 G SG CYS 4876 D CYS 4876 1_555 G SG CYS 4882 D CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf7 H SG CYS 3170 C CYS 3170 1_555 H SG CYS 3240 C CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf8 H SG CYS 4876 C CYS 4876 1_555 H SG CYS 4882 C CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc1 A OE2 GLU 3893 A GLU 3893 1_555 J CA CA . A CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc2 A OE1 GLU 3967 A GLU 3967 1_555 J CA CA . A CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? 
metalc ? metalc3 A OE2 GLU 3967 A GLU 3967 1_555 J CA CA . A CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc4 A SG CYS 4958 A CYS 4958 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc5 A SG CYS 4961 A CYS 4961 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc6 A NE2 HIS 4978 A HIS 4978 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc7 A ND1 HIS 4983 A HIS 4983 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc8 A O THR 5001 A THR 5001 1_555 J CA CA . A CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc9 F OE2 GLU 3893 B GLU 3893 1_555 N CA CA . B CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc10 F OE1 GLU 3967 B GLU 3967 1_555 N CA CA . B CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? 
metalc ? metalc11 F OE2 GLU 3967 B GLU 3967 1_555 N CA CA . B CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc12 F SG CYS 4958 B CYS 4958 1_555 O ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc13 F SG CYS 4961 B CYS 4961 1_555 O ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc14 F NE2 HIS 4978 B HIS 4978 1_555 O ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc15 F ND1 HIS 4983 B HIS 4983 1_555 O ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc16 F O THR 5001 B THR 5001 1_555 N CA CA . B CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc17 G OE2 GLU 3893 D GLU 3893 1_555 R CA CA . D CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc18 G OE1 GLU 3967 D GLU 3967 1_555 R CA CA . D CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? 
metalc ? metalc19 G OE2 GLU 3967 D GLU 3967 1_555 R CA CA . D CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc20 G SG CYS 4958 D CYS 4958 1_555 S ZN ZN . D ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc21 G SG CYS 4961 D CYS 4961 1_555 S ZN ZN . D ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc22 G NE2 HIS 4978 D HIS 4978 1_555 S ZN ZN . D ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc23 G ND1 HIS 4983 D HIS 4983 1_555 S ZN ZN . D ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc24 G O THR 5001 D THR 5001 1_555 R CA CA . D CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc25 H OE2 GLU 3893 C GLU 3893 1_555 V CA CA . C CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc26 H OE1 GLU 3967 C GLU 3967 1_555 V CA CA . C CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? 
metalc ? metalc27 H OE2 GLU 3967 C GLU 3967 1_555 V CA CA . C CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc28 H SG CYS 4958 C CYS 4958 1_555 W ZN ZN . C ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc29 H SG CYS 4961 C CYS 4961 1_555 W ZN ZN . C ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc30 H NE2 HIS 4978 C HIS 4978 1_555 W ZN ZN . C ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc31 H ND1 HIS 4983 C HIS 4983 1_555 W ZN ZN . C ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc32 H O THR 5001 C THR 5001 1_555 V CA CA . C CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 91 n n 
PG O2G ATP sing 92 n n 
PG O3G ATP sing 93 n n 
PG O3B ATP sing 94 n n 
O2G HOG2 ATP sing 95 n n 
O3G HOG3 ATP sing 96 n n 
PB O1B ATP doub 97 n n 
PB O2B ATP sing 98 n n 
PB O3B ATP sing 99 n n 
PB O3A ATP sing 100 n n 
O2B HOB2 ATP sing 101 n n 
PA O1A ATP doub 102 n n 
PA O2A ATP sing 103 n n 
PA O3A ATP sing 104 n n 
PA O5' ATP sing 105 n n 
O2A HOA2 ATP sing 106 n n 
O5' C5' ATP sing 107 n n 
C5' C4' ATP sing 108 n n 
C5' "H5'1" ATP sing 109 n n 
C5' "H5'2" ATP sing 110 n n 
C4' O4' ATP sing 111 n n 
C4' C3' ATP sing 112 n n 
C4' H4' ATP sing 113 n n 
O4' C1' ATP sing 114 n n 
C3' O3' ATP sing 115 n n 
C3' C2' ATP sing 116 n n 
C3' H3' ATP sing 117 n n 
O3' HO3' ATP sing 118 n n 
C2' O2' ATP sing 119 n n 
C2' C1' ATP sing 120 n n 
C2' H2' ATP sing 121 n n 
O2' HO2' ATP sing 122 n n 
C1' N9 ATP sing 123 n n 
C1' H1' ATP sing 124 n n 
N9 C8 ATP sing 125 n y 
N9 C4 ATP sing 126 n y 
C8 N7 ATP doub 127 n y 
C8 H8 ATP sing 128 n n 
N7 C5 ATP sing 129 n y 
C5 C6 ATP sing 130 n y 
C5 C4 ATP doub 131 n y 
C6 N6 ATP sing 132 n n 
C6 N1 ATP doub 133 n y 
N6 HN61 ATP sing 134 n n 
N6 HN62 ATP sing 135 n n 
N1 C2 ATP sing 136 n y 
C2 N3 ATP doub 137 n y 
C2 H2 ATP sing 138 n n 
N3 C4 ATP sing 139 n y 
#
_atom_sites.entry_id                     9E1H 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 ATP A 1 5301 5301 ATP ATP . 
J 4 CA A 1 5302 5302 CA CA . 
K 5 ZN A 1 5303 5303 ZN ZN . 
L 6 A1BD5 A 1 5304 5304 A1BD5 LIG . 
M 3 ATP B 1 5301 5301 ATP ATP . 
N 4 CA B 1 5302 5302 CA CA . 
O 5 ZN B 1 5303 5303 ZN ZN . 
P 6 A1BD5 B 1 5304 5304 A1BD5 LIG . 
Q 3 ATP D 1 5301 5301 ATP ATP . 
R 4 CA D 1 5302 5302 CA CA . 
S 5 ZN D 1 5303 5303 ZN ZN . 
T 6 A1BD5 D 1 5304 5304 A1BD5 LIG . 
U 3 ATP C 1 5301 5301 ATP ATP . 
V 4 CA C 1 5302 5302 CA CA . 
W 5 ZN C 1 5303 5303 ZN ZN . 
X 6 A1BD5 C 1 5304 5304 A1BD5 LIG . 
Y 7 HOH A 1 5401 5305 HOH HOH . 
Z 7 HOH B 1 5401 5305 HOH HOH . 
AA 7 HOH D 1 5401 5305 HOH HOH . 
BA 7 HOH C 1 5401 5305 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . Q 3 191.064 198.063 254.479 1 158.3 ? PG ATP 5301 D 1 
HETATM 2 O O1G ATP . . . Q 3 191.084 199.507 254.85 1 139.23 ? O1G ATP 5301 D 1 
HETATM 3 O O2G ATP . . . Q 3 192.336 197.599 253.769 1 147.72 ? O2G ATP 5301 D 1 
HETATM 4 O O3G ATP . . . Q 3 190.78 197.126 255.654 1 145.04 ? O3G ATP 5301 D 1 
HETATM 5 P PB ATP . . . Q 3 189.685 197.43 251.89 1 170.59 ? PB ATP 5301 D 1 
HETATM 6 O O1B ATP . . . Q 3 189.373 196.003 251.659 1 143.36 ? O1B ATP 5301 D 1 
HETATM 7 O O2B ATP . . . Q 3 188.653 198.419 251.346 1 158.75 ? O2B ATP 5301 D 1 
HETATM 8 O O3B ATP . . . Q 3 189.89 197.766 253.435 1 161.02 ? O3B ATP 5301 D 1 
HETATM 9 P PA ATP . . . Q 3 191.941 199.163 251.084 1 154.34 ? PA ATP 5301 D 1 
HETATM 10 O O1A ATP . . . Q 3 191.992 199.977 252.313 1 141.65 ? O1A ATP 5301 D 1 
HETATM 11 O O2A ATP . . . Q 3 191.391 199.884 249.852 1 147.14 ? O2A ATP 5301 D 1 
HETATM 12 O O3A ATP . . . Q 3 191.096 197.833 251.275 1 159.8 ? O3A ATP 5301 D 1 
HETATM 13 O O5' ATP . . . Q 3 193.379 198.613 250.74 1 126.03 ? O5' ATP 5301 D 1 
HETATM 14 C C5' ATP . . . Q 3 194.55 199.105 251.423 1 113.6 ? C5' ATP 5301 D 1 
HETATM 15 C C4' ATP . . . Q 3 195.339 200.011 250.512 1 103.89 ? C4' ATP 5301 D 1 
HETATM 16 O O4' ATP . . . Q 3 196.28 199.238 249.752 1 91.44 ? O4' ATP 5301 D 1 
HETATM 17 C C3' ATP . . . Q 3 194.535 200.781 249.468 1 103.44 ? C3' ATP 5301 D 1 
HETATM 18 O O3' ATP . . . Q 3 194.204 202.079 249.944 1 111.06 ? O3' ATP 5301 D 1 
HETATM 19 C C2' ATP . . . Q 3 195.481 200.861 248.258 1 89.4 ? C2' ATP 5301 D 1 
HETATM 20 O O2' ATP . . . Q 3 195.828 202.206 247.954 1 97.13 ? O2' ATP 5301 D 1 
HETATM 21 C C1' ATP . . . Q 3 196.715 200.079 248.717 1 84.4 ? C1' ATP 5301 D 1 
HETATM 22 N N9 ATP . . . Q 3 197.317 199.26 247.677 1 69.54 ? N9 ATP 5301 D 1 
HETATM 23 C C8 ATP . . . Q 3 198.505 199.483 247.04 1 67.64 ? C8 ATP 5301 D 1 
HETATM 24 N N7 ATP . . . Q 3 198.804 198.583 246.137 1 61.76 ? N7 ATP 5301 D 1 
HETATM 25 C C5 ATP . . . Q 3 197.733 197.707 246.183 1 55.98 ? C5 ATP 5301 D 1 
HETATM 26 C C6 ATP . . . Q 3 197.44 196.533 245.47 1 57.14 ? C6 ATP 5301 D 1 
HETATM 27 N N6 ATP . . . Q 3 198.234 196.016 244.529 1 58.86 ? N6 ATP 5301 D 1 
HETATM 28 N N1 ATP . . . Q 3 196.289 195.897 245.758 1 57.83 ? N1 ATP 5301 D 1 
HETATM 29 C C2 ATP . . . Q 3 195.491 196.407 246.697 1 58.7 ? C2 ATP 5301 D 1 
HETATM 30 N N3 ATP . . . Q 3 195.662 197.504 247.433 1 65.9 ? N3 ATP 5301 D 1 
HETATM 31 C C4 ATP . . . Q 3 196.81 198.111 247.128 1 60.93 ? C4 ATP 5301 D 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    180 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#