data_9E1H # _model_server_result.job_id lIyBQDXb3ef43G0oRJiSXg _model_server_result.datetime_utc '2024-11-14 23:38:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9e1h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":5301}' # _entry.id 9E1H # _exptl.entry_id 9E1H _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9E1H _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9E1H _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 M N N ? 3 Q N N ? 3 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3170 A CYS 3170 1_555 A SG CYS 3240 A CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 4876 A CYS 4876 1_555 A SG CYS 4882 A CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 F SG CYS 3170 B CYS 3170 1_555 F SG CYS 3240 B CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 F SG CYS 4876 B CYS 4876 1_555 F SG CYS 4882 B CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 G SG CYS 3170 D CYS 3170 1_555 G SG CYS 3240 D CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 G SG CYS 4876 D CYS 4876 1_555 G SG CYS 4882 D CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf7 H SG CYS 3170 C CYS 3170 1_555 H SG CYS 3240 C CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 H SG CYS 4876 C CYS 4876 1_555 H SG CYS 4882 C CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 A OE2 GLU 3893 A GLU 3893 1_555 J CA CA . A CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc2 A OE1 GLU 3967 A GLU 3967 1_555 J CA CA . A CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc3 A OE2 GLU 3967 A GLU 3967 1_555 J CA CA . A CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc4 A SG CYS 4958 A CYS 4958 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc5 A SG CYS 4961 A CYS 4961 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc6 A NE2 HIS 4978 A HIS 4978 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc7 A ND1 HIS 4983 A HIS 4983 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc8 A O THR 5001 A THR 5001 1_555 J CA CA . A CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc9 F OE2 GLU 3893 B GLU 3893 1_555 N CA CA . B CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc10 F OE1 GLU 3967 B GLU 3967 1_555 N CA CA . B CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc11 F OE2 GLU 3967 B GLU 3967 1_555 N CA CA . B CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc12 F SG CYS 4958 B CYS 4958 1_555 O ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc13 F SG CYS 4961 B CYS 4961 1_555 O ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc14 F NE2 HIS 4978 B HIS 4978 1_555 O ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc15 F ND1 HIS 4983 B HIS 4983 1_555 O ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc16 F O THR 5001 B THR 5001 1_555 N CA CA . B CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc17 G OE2 GLU 3893 D GLU 3893 1_555 R CA CA . D CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc18 G OE1 GLU 3967 D GLU 3967 1_555 R CA CA . D CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc19 G OE2 GLU 3967 D GLU 3967 1_555 R CA CA . D CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc20 G SG CYS 4958 D CYS 4958 1_555 S ZN ZN . D ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc21 G SG CYS 4961 D CYS 4961 1_555 S ZN ZN . D ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc22 G NE2 HIS 4978 D HIS 4978 1_555 S ZN ZN . D ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc23 G ND1 HIS 4983 D HIS 4983 1_555 S ZN ZN . D ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc24 G O THR 5001 D THR 5001 1_555 R CA CA . D CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc25 H OE2 GLU 3893 C GLU 3893 1_555 V CA CA . C CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc26 H OE1 GLU 3967 C GLU 3967 1_555 V CA CA . C CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc27 H OE2 GLU 3967 C GLU 3967 1_555 V CA CA . C CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc28 H SG CYS 4958 C CYS 4958 1_555 W ZN ZN . C ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc29 H SG CYS 4961 C CYS 4961 1_555 W ZN ZN . C ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc30 H NE2 HIS 4978 C HIS 4978 1_555 W ZN ZN . C ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc31 H ND1 HIS 4983 C HIS 4983 1_555 W ZN ZN . C ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc32 H O THR 5001 C THR 5001 1_555 V CA CA . C CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 91 n n PG O2G ATP sing 92 n n PG O3G ATP sing 93 n n PG O3B ATP sing 94 n n O2G HOG2 ATP sing 95 n n O3G HOG3 ATP sing 96 n n PB O1B ATP doub 97 n n PB O2B ATP sing 98 n n PB O3B ATP sing 99 n n PB O3A ATP sing 100 n n O2B HOB2 ATP sing 101 n n PA O1A ATP doub 102 n n PA O2A ATP sing 103 n n PA O3A ATP sing 104 n n PA O5' ATP sing 105 n n O2A HOA2 ATP sing 106 n n O5' C5' ATP sing 107 n n C5' C4' ATP sing 108 n n C5' "H5'1" ATP sing 109 n n C5' "H5'2" ATP sing 110 n n C4' O4' ATP sing 111 n n C4' C3' ATP sing 112 n n C4' H4' ATP sing 113 n n O4' C1' ATP sing 114 n n C3' O3' ATP sing 115 n n C3' C2' ATP sing 116 n n C3' H3' ATP sing 117 n n O3' HO3' ATP sing 118 n n C2' O2' ATP sing 119 n n C2' C1' ATP sing 120 n n C2' H2' ATP sing 121 n n O2' HO2' ATP sing 122 n n C1' N9 ATP sing 123 n n C1' H1' ATP sing 124 n n N9 C8 ATP sing 125 n y N9 C4 ATP sing 126 n y C8 N7 ATP doub 127 n y C8 H8 ATP sing 128 n n N7 C5 ATP sing 129 n y C5 C6 ATP sing 130 n y C5 C4 ATP doub 131 n y C6 N6 ATP sing 132 n n C6 N1 ATP doub 133 n y N6 HN61 ATP sing 134 n n N6 HN62 ATP sing 135 n n N1 C2 ATP sing 136 n y C2 N3 ATP doub 137 n y C2 H2 ATP sing 138 n n N3 C4 ATP sing 139 n y # _atom_sites.entry_id 9E1H _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ATP A 1 5301 5301 ATP ATP . J 4 CA A 1 5302 5302 CA CA . K 5 ZN A 1 5303 5303 ZN ZN . L 6 A1BD5 A 1 5304 5304 A1BD5 LIG . M 3 ATP B 1 5301 5301 ATP ATP . N 4 CA B 1 5302 5302 CA CA . O 5 ZN B 1 5303 5303 ZN ZN . P 6 A1BD5 B 1 5304 5304 A1BD5 LIG . Q 3 ATP D 1 5301 5301 ATP ATP . R 4 CA D 1 5302 5302 CA CA . S 5 ZN D 1 5303 5303 ZN ZN . T 6 A1BD5 D 1 5304 5304 A1BD5 LIG . U 3 ATP C 1 5301 5301 ATP ATP . V 4 CA C 1 5302 5302 CA CA . W 5 ZN C 1 5303 5303 ZN ZN . X 6 A1BD5 C 1 5304 5304 A1BD5 LIG . Y 7 HOH A 1 5401 5305 HOH HOH . Z 7 HOH B 1 5401 5305 HOH HOH . AA 7 HOH D 1 5401 5305 HOH HOH . BA 7 HOH C 1 5401 5305 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . U 3 225.361 191.06 254.476 1 158.3 ? PG ATP 5301 C 1 HETATM 2 O O1G ATP . . . U 3 223.918 191.08 254.848 1 139.23 ? O1G ATP 5301 C 1 HETATM 3 O O2G ATP . . . U 3 225.826 192.332 253.766 1 147.72 ? O2G ATP 5301 C 1 HETATM 4 O O3G ATP . . . U 3 226.299 190.776 255.651 1 145.04 ? O3G ATP 5301 C 1 HETATM 5 P PB ATP . . . U 3 225.995 189.68 251.887 1 170.59 ? PB ATP 5301 C 1 HETATM 6 O O1B ATP . . . U 3 227.421 189.369 251.656 1 143.36 ? O1B ATP 5301 C 1 HETATM 7 O O2B ATP . . . U 3 225.005 188.649 251.343 1 158.75 ? O2B ATP 5301 C 1 HETATM 8 O O3B ATP . . . U 3 225.658 189.885 253.432 1 161.02 ? O3B ATP 5301 C 1 HETATM 9 P PA ATP . . . U 3 224.261 191.937 251.081 1 154.34 ? PA ATP 5301 C 1 HETATM 10 O O1A ATP . . . U 3 223.447 191.988 252.31 1 141.65 ? O1A ATP 5301 C 1 HETATM 11 O O2A ATP . . . U 3 223.541 191.387 249.849 1 147.14 ? O2A ATP 5301 C 1 HETATM 12 O O3A ATP . . . U 3 225.591 191.092 251.272 1 159.8 ? O3A ATP 5301 C 1 HETATM 13 O O5' ATP . . . U 3 224.812 193.375 250.737 1 126.03 ? O5' ATP 5301 C 1 HETATM 14 C C5' ATP . . . U 3 224.32 194.545 251.42 1 113.6 ? C5' ATP 5301 C 1 HETATM 15 C C4' ATP . . . U 3 223.413 195.335 250.509 1 103.89 ? C4' ATP 5301 C 1 HETATM 16 O O4' ATP . . . U 3 224.187 196.276 249.749 1 91.44 ? O4' ATP 5301 C 1 HETATM 17 C C3' ATP . . . U 3 222.644 194.531 249.465 1 103.44 ? C3' ATP 5301 C 1 HETATM 18 O O3' ATP . . . U 3 221.346 194.2 249.941 1 111.06 ? O3' ATP 5301 C 1 HETATM 19 C C2' ATP . . . U 3 222.564 195.477 248.255 1 89.4 ? C2' ATP 5301 C 1 HETATM 20 O O2' ATP . . . U 3 221.219 195.824 247.951 1 97.13 ? O2' ATP 5301 C 1 HETATM 21 C C1' ATP . . . U 3 223.345 196.711 248.714 1 84.4 ? C1' ATP 5301 C 1 HETATM 22 N N9 ATP . . . U 3 224.164 197.312 247.674 1 69.54 ? N9 ATP 5301 C 1 HETATM 23 C C8 ATP . . . U 3 223.941 198.501 247.037 1 67.64 ? C8 ATP 5301 C 1 HETATM 24 N N7 ATP . . . U 3 224.841 198.8 246.134 1 61.76 ? N7 ATP 5301 C 1 HETATM 25 C C5 ATP . . . U 3 225.718 197.729 246.18 1 55.98 ? C5 ATP 5301 C 1 HETATM 26 C C6 ATP . . . U 3 226.891 197.436 245.467 1 57.14 ? C6 ATP 5301 C 1 HETATM 27 N N6 ATP . . . U 3 227.408 198.229 244.526 1 58.86 ? N6 ATP 5301 C 1 HETATM 28 N N1 ATP . . . U 3 227.527 196.284 245.755 1 57.83 ? N1 ATP 5301 C 1 HETATM 29 C C2 ATP . . . U 3 227.017 195.487 246.693 1 58.7 ? C2 ATP 5301 C 1 HETATM 30 N N3 ATP . . . U 3 225.92 195.658 247.43 1 65.9 ? N3 ATP 5301 C 1 HETATM 31 C C4 ATP . . . U 3 225.314 196.805 247.125 1 60.93 ? C4 ATP 5301 C 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 218 _model_server_stats.query_time_ms 522 _model_server_stats.encode_time_ms 70 _model_server_stats.element_count 31 #