data_9E4U # _model_server_result.job_id JTfmvW4PvyOwWrjHQ9dw1g _model_server_result.datetime_utc '2025-07-28 04:58:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9e4u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2401}' # _entry.id 9E4U # _exptl.entry_id 9E4U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9E4U _cell.length_a 59.408 _cell.length_b 59.408 _cell.length_c 479.709 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9E4U _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 237 n n PA O2A NAI sing 238 n n PA O5B NAI sing 239 n n PA O3 NAI sing 240 n n O2A HOA2 NAI sing 241 n n O5B C5B NAI sing 242 n n C5B C4B NAI sing 243 n n C5B H51A NAI sing 244 n n C5B H52A NAI sing 245 n n C4B O4B NAI sing 246 n n C4B C3B NAI sing 247 n n C4B H4B NAI sing 248 n n O4B C1B NAI sing 249 n n C3B O3B NAI sing 250 n n C3B C2B NAI sing 251 n n C3B H3B NAI sing 252 n n O3B HO3A NAI sing 253 n n C2B O2B NAI sing 254 n n C2B C1B NAI sing 255 n n C2B H2B NAI sing 256 n n O2B HO2A NAI sing 257 n n C1B N9A NAI sing 258 n n C1B H1B NAI sing 259 n n N9A C8A NAI sing 260 n y N9A C4A NAI sing 261 n y C8A N7A NAI doub 262 n y C8A H8A NAI sing 263 n n N7A C5A NAI sing 264 n y C5A C6A NAI sing 265 n y C5A C4A NAI doub 266 n y C6A N6A NAI sing 267 n n C6A N1A NAI doub 268 n y N6A H61A NAI sing 269 n n N6A H62A NAI sing 270 n n N1A C2A NAI sing 271 n y C2A N3A NAI doub 272 n y C2A H2A NAI sing 273 n n N3A C4A NAI sing 274 n y O3 PN NAI sing 275 n n PN O1N NAI sing 276 n n PN O2N NAI doub 277 n n PN O5D NAI sing 278 n n O1N HO1N NAI sing 279 n n O5D C5D NAI sing 280 n n C5D C4D NAI sing 281 n n C5D H51N NAI sing 282 n n C5D H52N NAI sing 283 n n C4D O4D NAI sing 284 n n C4D C3D NAI sing 285 n n C4D H4D NAI sing 286 n n O4D C1D NAI sing 287 n n C3D O3D NAI sing 288 n n C3D C2D NAI sing 289 n n C3D H3D NAI sing 290 n n O3D HO3N NAI sing 291 n n C2D O2D NAI sing 292 n n C2D C1D NAI sing 293 n n C2D H2D NAI sing 294 n n O2D HO2N NAI sing 295 n n C1D N1N NAI sing 296 n n C1D H1D NAI sing 297 n n N1N C2N NAI sing 298 n n N1N C6N NAI sing 299 n n C2N C3N NAI doub 300 n n C2N H2N NAI sing 301 n n C3N C7N NAI sing 302 n n C3N C4N NAI sing 303 n n C7N O7N NAI doub 304 n n C7N N7N NAI sing 305 n n N7N H71N NAI sing 306 n n N7N H72N NAI sing 307 n n C4N C5N NAI sing 308 n n C4N H4N NAI sing 309 n n C4N H42N NAI sing 310 n n C5N C6N NAI doub 311 n n C5N H5N NAI sing 312 n n C6N H6N NAI sing 313 n n # _atom_sites.entry_id 9E4U _atom_sites.fract_transf_matrix[1][1] 0.016833 _atom_sites.fract_transf_matrix[1][2] 0.009718 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019437 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002085 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAI B 1 2401 1 NAI NAI . D 3 HOH A 1 2401 47 HOH HOH . D 3 HOH A 2 2402 39 HOH HOH . D 3 HOH A 3 2403 78 HOH HOH . D 3 HOH A 4 2404 98 HOH HOH . D 3 HOH A 5 2405 18 HOH HOH . D 3 HOH A 6 2406 10 HOH HOH . D 3 HOH A 7 2407 38 HOH HOH . D 3 HOH A 8 2408 33 HOH HOH . D 3 HOH A 9 2409 35 HOH HOH . D 3 HOH A 10 2410 27 HOH HOH . D 3 HOH A 11 2411 80 HOH HOH . D 3 HOH A 12 2412 49 HOH HOH . D 3 HOH A 13 2413 71 HOH HOH . D 3 HOH A 14 2414 41 HOH HOH . D 3 HOH A 15 2415 30 HOH HOH . D 3 HOH A 16 2416 64 HOH HOH . D 3 HOH A 17 2417 87 HOH HOH . D 3 HOH A 18 2418 9 HOH HOH . D 3 HOH A 19 2419 8 HOH HOH . D 3 HOH A 20 2420 72 HOH HOH . D 3 HOH A 21 2421 48 HOH HOH . D 3 HOH A 22 2422 3 HOH HOH . D 3 HOH A 23 2423 31 HOH HOH . D 3 HOH A 24 2424 36 HOH HOH . D 3 HOH A 25 2425 104 HOH HOH . D 3 HOH A 26 2426 6 HOH HOH . D 3 HOH A 27 2427 2 HOH HOH . D 3 HOH A 28 2428 7 HOH HOH . D 3 HOH A 29 2429 4 HOH HOH . D 3 HOH A 30 2430 58 HOH HOH . D 3 HOH A 31 2431 50 HOH HOH . D 3 HOH A 32 2432 62 HOH HOH . D 3 HOH A 33 2433 16 HOH HOH . D 3 HOH A 34 2434 45 HOH HOH . D 3 HOH A 35 2435 59 HOH HOH . D 3 HOH A 36 2436 51 HOH HOH . D 3 HOH A 37 2437 100 HOH HOH . D 3 HOH A 38 2438 105 HOH HOH . D 3 HOH A 39 2439 83 HOH HOH . E 3 HOH B 1 2501 68 HOH HOH . E 3 HOH B 2 2502 29 HOH HOH . E 3 HOH B 3 2503 11 HOH HOH . E 3 HOH B 4 2504 14 HOH HOH . E 3 HOH B 5 2505 20 HOH HOH . E 3 HOH B 6 2506 97 HOH HOH . E 3 HOH B 7 2507 56 HOH HOH . E 3 HOH B 8 2508 96 HOH HOH . E 3 HOH B 9 2509 1 HOH HOH . E 3 HOH B 10 2510 22 HOH HOH . E 3 HOH B 11 2511 60 HOH HOH . E 3 HOH B 12 2512 21 HOH HOH . E 3 HOH B 13 2513 34 HOH HOH . E 3 HOH B 14 2514 43 HOH HOH . E 3 HOH B 15 2515 44 HOH HOH . E 3 HOH B 16 2516 37 HOH HOH . E 3 HOH B 17 2517 61 HOH HOH . E 3 HOH B 18 2518 66 HOH HOH . E 3 HOH B 19 2519 40 HOH HOH . E 3 HOH B 20 2520 107 HOH HOH . E 3 HOH B 21 2521 86 HOH HOH . E 3 HOH B 22 2522 42 HOH HOH . E 3 HOH B 23 2523 69 HOH HOH . E 3 HOH B 24 2524 25 HOH HOH . E 3 HOH B 25 2525 91 HOH HOH . E 3 HOH B 26 2526 57 HOH HOH . E 3 HOH B 27 2527 109 HOH HOH . E 3 HOH B 28 2528 92 HOH HOH . E 3 HOH B 29 2529 5 HOH HOH . E 3 HOH B 30 2530 23 HOH HOH . E 3 HOH B 31 2531 26 HOH HOH . E 3 HOH B 32 2532 17 HOH HOH . E 3 HOH B 33 2533 54 HOH HOH . E 3 HOH B 34 2534 13 HOH HOH . E 3 HOH B 35 2535 65 HOH HOH . E 3 HOH B 36 2536 12 HOH HOH . E 3 HOH B 37 2537 53 HOH HOH . E 3 HOH B 38 2538 101 HOH HOH . E 3 HOH B 39 2539 75 HOH HOH . E 3 HOH B 40 2540 15 HOH HOH . E 3 HOH B 41 2541 28 HOH HOH . E 3 HOH B 42 2542 63 HOH HOH . E 3 HOH B 43 2543 19 HOH HOH . E 3 HOH B 44 2544 81 HOH HOH . E 3 HOH B 45 2545 70 HOH HOH . E 3 HOH B 46 2546 46 HOH HOH . E 3 HOH B 47 2547 85 HOH HOH . E 3 HOH B 48 2548 55 HOH HOH . E 3 HOH B 49 2549 103 HOH HOH . E 3 HOH B 50 2550 108 HOH HOH . E 3 HOH B 51 2551 79 HOH HOH . E 3 HOH B 52 2552 89 HOH HOH . E 3 HOH B 53 2553 24 HOH HOH . E 3 HOH B 54 2554 74 HOH HOH . E 3 HOH B 55 2555 93 HOH HOH . E 3 HOH B 56 2556 106 HOH HOH . E 3 HOH B 57 2557 88 HOH HOH . E 3 HOH B 58 2558 99 HOH HOH . E 3 HOH B 59 2559 32 HOH HOH . E 3 HOH B 60 2560 84 HOH HOH . E 3 HOH B 61 2561 94 HOH HOH . E 3 HOH B 62 2562 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . C 2 -5.397 38.614 132.297 0.75 75.71 ? PA NAI 2401 B 1 HETATM 2 O O1A NAI . . . C 2 -5.325 39.592 131.194 0.75 76.52 ? O1A NAI 2401 B 1 HETATM 3 O O2A NAI . . . C 2 -6.328 37.422 132.079 0.75 71.63 ? O2A NAI 2401 B 1 HETATM 4 O O5B NAI . . . C 2 -5.792 39.304 133.641 0.75 75.23 ? O5B NAI 2401 B 1 HETATM 5 C C5B NAI . . . C 2 -5.995 40.729 133.716 0.75 73.23 ? C5B NAI 2401 B 1 HETATM 6 C C4B NAI . . . C 2 -7.336 40.944 134.357 0.75 77.6 ? C4B NAI 2401 B 1 HETATM 7 O O4B NAI . . . C 2 -7.349 42.221 135.033 0.75 81.65 ? O4B NAI 2401 B 1 HETATM 8 C C3B NAI . . . C 2 -8.521 40.944 133.389 0.75 79.17 ? C3B NAI 2401 B 1 HETATM 9 O O3B NAI . . . C 2 -9.591 40.158 133.901 0.75 81.76 ? O3B NAI 2401 B 1 HETATM 10 C C2B NAI . . . C 2 -8.896 42.425 133.297 0.75 79.48 ? C2B NAI 2401 B 1 HETATM 11 O O2B NAI . . . C 2 -10.284 42.611 133.039 0.75 84.53 ? O2B NAI 2401 B 1 HETATM 12 C C1B NAI . . . C 2 -8.542 42.897 134.704 0.75 84.45 ? C1B NAI 2401 B 1 HETATM 13 N N9A NAI . . . C 2 -8.31 44.331 134.814 0.75 84.16 ? N9A NAI 2401 B 1 HETATM 14 C C8A NAI . . . C 2 -7.683 45.141 133.903 0.75 82.34 ? C8A NAI 2401 B 1 HETATM 15 N N7A NAI . . . C 2 -7.624 46.401 134.26 0.75 80.04 ? N7A NAI 2401 B 1 HETATM 16 C C5A NAI . . . C 2 -8.252 46.422 135.495 0.75 82.25 ? C5A NAI 2401 B 1 HETATM 17 C C6A NAI . . . C 2 -8.519 47.461 136.408 0.75 80.74 ? C6A NAI 2401 B 1 HETATM 18 N N6A NAI . . . C 2 -8.167 48.735 136.208 0.75 79.43 ? N6A NAI 2401 B 1 HETATM 19 N N1A NAI . . . C 2 -9.169 47.143 137.549 0.75 79.49 ? N1A NAI 2401 B 1 HETATM 20 C C2A NAI . . . C 2 -9.525 45.872 137.754 0.75 82.12 ? C2A NAI 2401 B 1 HETATM 21 N N3A NAI . . . C 2 -9.328 44.811 136.969 0.75 81.63 ? N3A NAI 2401 B 1 HETATM 22 C C4A NAI . . . C 2 -8.684 45.153 135.848 0.75 81.6 ? C4A NAI 2401 B 1 HETATM 23 O O3 NAI . . . C 2 -3.954 38.037 132.642 0.75 74.97 ? O3 NAI 2401 B 1 HETATM 24 P PN NAI . . . C 2 -3.353 36.907 133.589 0.75 75.45 ? PN NAI 2401 B 1 HETATM 25 O O1N NAI . . . C 2 -2.752 35.855 132.657 0.75 69.76 ? O1N NAI 2401 B 1 HETATM 26 O O2N NAI . . . C 2 -4.359 36.401 134.556 0.75 65.29 ? O2N NAI 2401 B 1 HETATM 27 O O5D NAI . . . C 2 -2.172 37.653 134.331 0.75 66.24 ? O5D NAI 2401 B 1 HETATM 28 C C5D NAI . . . C 2 -2.431 38.566 135.418 0.75 68.2 ? C5D NAI 2401 B 1 HETATM 29 C C4D NAI . . . C 2 -1.125 39.118 135.934 0.75 68.74 ? C4D NAI 2401 B 1 HETATM 30 O O4D NAI . . . C 2 -0.325 38.042 136.475 0.75 71.05 ? O4D NAI 2401 B 1 HETATM 31 C C3D NAI . . . C 2 -0.259 39.833 134.894 0.75 68.66 ? C3D NAI 2401 B 1 HETATM 32 O O3D NAI . . . C 2 0.261 41.06 135.397 0.75 68.15 ? O3D NAI 2401 B 1 HETATM 33 C C2D NAI . . . C 2 0.841 38.811 134.589 0.75 65.75 ? C2D NAI 2401 B 1 HETATM 34 O O2D NAI . . . C 2 2.067 39.432 134.212 0.75 62.02 ? O2D NAI 2401 B 1 HETATM 35 C C1D NAI . . . C 2 0.979 38.107 135.937 0.75 67.87 ? C1D NAI 2401 B 1 HETATM 36 N N1N NAI . . . C 2 1.51 36.755 135.833 0.75 69.46 ? N1N NAI 2401 B 1 HETATM 37 C C2N NAI . . . C 2 2.846 36.561 135.793 0.75 72.03 ? C2N NAI 2401 B 1 HETATM 38 C C3N NAI . . . C 2 3.394 35.337 135.641 0.75 69.9 ? C3N NAI 2401 B 1 HETATM 39 C C7N NAI . . . C 2 4.852 35.25 135.704 0.75 66.96 ? C7N NAI 2401 B 1 HETATM 40 O O7N NAI . . . C 2 5.446 34.165 135.638 0.75 61.83 ? O7N NAI 2401 B 1 HETATM 41 N N7N NAI . . . C 2 5.524 36.39 135.836 0.75 68.47 ? N7N NAI 2401 B 1 HETATM 42 C C4N NAI . . . C 2 2.551 34.096 135.617 0.75 64 ? C4N NAI 2401 B 1 HETATM 43 C C5N NAI . . . C 2 1.109 34.443 135.677 0.75 65.68 ? C5N NAI 2401 B 1 HETATM 44 C C6N NAI . . . C 2 0.661 35.691 135.776 0.75 68.33 ? C6N NAI 2401 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #