data_9E4V
#
_model_server_result.job_id            KMTi17nkgo5nNk_ARwlNHQ 
_model_server_result.datetime_utc      '2025-01-11 06:20:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9e4v 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":906}' 
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_entry.id    9E4V 
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_exptl.entry_id    9E4V 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9E4V 
_cell.length_a            114.088 
_cell.length_b            114.088 
_cell.length_c            145.397 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 9E4V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    'P 4abw 2nw' 
_symmetry.space_group_name_H-M     'P 41 21 2' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     9E4V 
_atom_sites.fract_transf_matrix[1][1]    0.008765 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008765 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006878 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MES B 1 901 901 MES MES . 
C 3 PG4 B 1 902 902 PG4 PG4 . 
D 4 DMS B 1 903 903 DMS DMS . 
E 5 PEG B 1 904 907 PEG PEG . 
F 5 PEG B 1 905 908 PEG PEG . 
G 6 GOL B 1 906 909 GOL GOL . 
H 7 CL B 1 907 2 CL CL . 
I 7 CL B 1 908 3 CL CL . 
J 7 CL B 1 909 4 CL CL . 
K 7 CL B 1 910 5 CL CL . 
L 5 PEG B 1 911 9 PEG PEG . 
M 5 PEG B 1 912 10 PEG PEG . 
N 8 K B 1 913 1 K K . 
O 8 K B 1 914 2 K K . 
P 8 K B 1 915 3 K K . 
Q 9 HOH B 1 1001 51 HOH HOH . 
Q 9 HOH B 2 1002 36 HOH HOH . 
Q 9 HOH B 3 1003 41 HOH HOH . 
Q 9 HOH B 4 1004 57 HOH HOH . 
Q 9 HOH B 5 1005 12 HOH HOH . 
Q 9 HOH B 6 1006 16 HOH HOH . 
Q 9 HOH B 7 1007 37 HOH HOH . 
Q 9 HOH B 8 1008 7 HOH HOH . 
Q 9 HOH B 9 1009 3 HOH HOH . 
Q 9 HOH B 10 1010 23 HOH HOH . 
Q 9 HOH B 11 1011 40 HOH HOH . 
Q 9 HOH B 12 1012 44 HOH HOH . 
Q 9 HOH B 13 1013 53 HOH HOH . 
Q 9 HOH B 14 1014 15 HOH HOH . 
Q 9 HOH B 15 1015 20 HOH HOH . 
Q 9 HOH B 16 1016 9 HOH HOH . 
Q 9 HOH B 17 1017 1 HOH HOH . 
Q 9 HOH B 18 1018 4 HOH HOH . 
Q 9 HOH B 19 1019 13 HOH HOH . 
Q 9 HOH B 20 1020 10 HOH HOH . 
Q 9 HOH B 21 1021 19 HOH HOH . 
Q 9 HOH B 22 1022 5 HOH HOH . 
Q 9 HOH B 23 1023 38 HOH HOH . 
Q 9 HOH B 24 1024 11 HOH HOH . 
Q 9 HOH B 25 1025 49 HOH HOH . 
Q 9 HOH B 26 1026 47 HOH HOH . 
Q 9 HOH B 27 1027 46 HOH HOH . 
Q 9 HOH B 28 1028 2 HOH HOH . 
Q 9 HOH B 29 1029 26 HOH HOH . 
Q 9 HOH B 30 1030 21 HOH HOH . 
Q 9 HOH B 31 1031 18 HOH HOH . 
Q 9 HOH B 32 1032 8 HOH HOH . 
Q 9 HOH B 33 1033 22 HOH HOH . 
Q 9 HOH B 34 1034 59 HOH HOH . 
Q 9 HOH B 35 1035 6 HOH HOH . 
Q 9 HOH B 36 1036 34 HOH HOH . 
Q 9 HOH B 37 1037 52 HOH HOH . 
Q 9 HOH B 38 1038 31 HOH HOH . 
Q 9 HOH B 39 1039 43 HOH HOH . 
Q 9 HOH B 40 1040 55 HOH HOH . 
Q 9 HOH B 41 1041 29 HOH HOH . 
Q 9 HOH B 42 1042 24 HOH HOH . 
Q 9 HOH B 43 1043 58 HOH HOH . 
Q 9 HOH B 44 1044 50 HOH HOH . 
Q 9 HOH B 45 1045 32 HOH HOH . 
Q 9 HOH B 46 1046 17 HOH HOH . 
Q 9 HOH B 47 1047 48 HOH HOH . 
Q 9 HOH B 48 1048 33 HOH HOH . 
Q 9 HOH B 49 1049 35 HOH HOH . 
Q 9 HOH B 50 1050 14 HOH HOH . 
Q 9 HOH B 51 1051 39 HOH HOH . 
Q 9 HOH B 52 1052 30 HOH HOH . 
Q 9 HOH B 53 1053 56 HOH HOH . 
Q 9 HOH B 54 1054 27 HOH HOH . 
Q 9 HOH B 55 1055 64 HOH HOH . 
Q 9 HOH B 56 1056 60 HOH HOH . 
Q 9 HOH B 57 1057 28 HOH HOH . 
Q 9 HOH B 58 1058 71 HOH HOH . 
Q 9 HOH B 59 1059 62 HOH HOH . 
Q 9 HOH B 60 1060 69 HOH HOH . 
Q 9 HOH B 61 1061 79 HOH HOH . 
Q 9 HOH B 62 1062 95 HOH HOH . 
Q 9 HOH B 63 1063 73 HOH HOH . 
Q 9 HOH B 64 1064 68 HOH HOH . 
Q 9 HOH B 65 1065 94 HOH HOH . 
Q 9 HOH B 66 1066 67 HOH HOH . 
Q 9 HOH B 67 1067 75 HOH HOH . 
Q 9 HOH B 68 1068 42 HOH HOH . 
Q 9 HOH B 69 1069 81 HOH HOH . 
Q 9 HOH B 70 1070 78 HOH HOH . 
Q 9 HOH B 71 1071 86 HOH HOH . 
Q 9 HOH B 72 1072 85 HOH HOH . 
Q 9 HOH B 73 1073 63 HOH HOH . 
Q 9 HOH B 74 1074 88 HOH HOH . 
Q 9 HOH B 75 1075 74 HOH HOH . 
Q 9 HOH B 76 1076 80 HOH HOH . 
Q 9 HOH B 77 1077 83 HOH HOH . 
Q 9 HOH B 78 1078 91 HOH HOH . 
Q 9 HOH B 79 1079 70 HOH HOH . 
Q 9 HOH B 80 1080 92 HOH HOH . 
Q 9 HOH B 81 1081 65 HOH HOH . 
Q 9 HOH B 82 1082 76 HOH HOH . 
Q 9 HOH B 83 1083 87 HOH HOH . 
Q 9 HOH B 84 1084 84 HOH HOH . 
Q 9 HOH B 85 1085 89 HOH HOH . 
Q 9 HOH B 86 1086 72 HOH HOH . 
Q 9 HOH B 87 1087 96 HOH HOH . 
Q 9 HOH B 88 1088 93 HOH HOH . 
Q 9 HOH B 89 1089 77 HOH HOH . 
Q 9 HOH B 90 1090 66 HOH HOH . 
Q 9 HOH B 91 1091 82 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 6 21.06 18.468 3.267 1 97.26 ? C1 GOL 906 B 1 
HETATM 2 O O1 GOL . . . G 6 20.143 17.603 2.6 1 97.35 ? O1 GOL 906 B 1 
HETATM 3 C C2 GOL . . . G 6 20.974 18.325 4.771 1 91.18 ? C2 GOL 906 B 1 
HETATM 4 O O2 GOL . . . G 6 22.052 19.034 5.379 1 95.68 ? O2 GOL 906 B 1 
HETATM 5 C C3 GOL . . . G 6 19.662 18.818 5.342 1 94.74 ? C3 GOL 906 B 1 
HETATM 6 O O3 GOL . . . G 6 19.657 18.76 6.766 1 93.89 ? O3 GOL 906 B 1 
HETATM 7 H H11 GOL . . . G 6 20.863 19.403 3.019 1 116.71 ? H11 GOL 906 B 1 
HETATM 8 H H12 GOL . . . G 6 21.979 18.256 2.974 1 116.71 ? H12 GOL 906 B 1 
HETATM 9 H HO1 GOL . . . G 6 19.356 17.829 2.81 1 116.82 ? HO1 GOL 906 B 1 
HETATM 10 H H2 GOL . . . G 6 21.064 17.369 4.994 1 109.42 ? H2 GOL 906 B 1 
HETATM 11 H HO2 GOL . . . G 6 22.777 18.711 5.079 1 114.82 ? HO2 GOL 906 B 1 
HETATM 12 H H31 GOL . . . G 6 18.925 18.262 4.991 1 113.69 ? H31 GOL 906 B 1 
HETATM 13 H H32 GOL . . . G 6 19.512 19.75 5.053 1 113.69 ? H32 GOL 906 B 1 
HETATM 14 H HO3 GOL . . . G 6 20.301 19.23 7.049 1 112.66 ? HO3 GOL 906 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
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