data_9E7N
#
_model_server_result.job_id            nfgnV5cdmFyWmpx5K_AE-Q 
_model_server_result.datetime_utc      '2025-08-31 12:49:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9e7n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":3201}' 
#
_entry.id    9E7N 
#
_exptl.entry_id    9E7N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9E7N 
_cell.length_a            79.919 
_cell.length_b            79.919 
_cell.length_c            342.703 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9E7N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,H,I,O,R 1 1 
B,C,G,J,K,L,M,N,P,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 L N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
3 oligosaccharide 
4 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
4 ? 3 5 3 MAN BMA C1 O1 . O6 HO6 . sing 
5 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
3 n E NAG 1 F 1 NAG F 1 NAG 
3 n E NAG 2 F 2 NAG F 2 NAG 
3 n E BMA 3 F 3 BMA F 3 BMA 
3 n E MAN 4 F 4 MAN F 4 MAN 
3 n E MAN 5 F 5 MAN F 5 MAN 
4 n F NAG 1 E 1 NAG E 1 NAG 
4 n F NAG 2 E 2 NAG E 2 NAG 
4 n G NAG 1 G 1 NAG G 1 NAG 
4 n G NAG 2 G 2 NAG G 2 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 12 B CYS 2835 1_555 A SG CYS 23 B CYS 2846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 A SG CYS 163 B CYS 2986 1_555 A SG CYS 187 B CYS 3010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 A SG CYS 201 B CYS 3024 1_555 A SG CYS 267 B CYS 3090 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 A SG CYS 212 B CYS 3035 1_555 A SG CYS 265 B CYS 3088 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.007 ? 
disulf ? disulf5 A SG CYS 212 B CYS 3035 1_555 A SG CYS 265 B CYS 3088 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf6 B SG CYS 12 A CYS 2835 1_555 B SG CYS 23 A CYS 2846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf7 B SG CYS 163 A CYS 2986 1_555 B SG CYS 187 A CYS 3010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf8 B SG CYS 201 A CYS 3024 1_555 B SG CYS 267 A CYS 3090 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf9 B SG CYS 212 A CYS 3035 1_555 B SG CYS 265 A CYS 3088 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf10 B SG CYS 212 A CYS 3035 1_555 B SG CYS 265 A CYS 3088 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf11 C SG CYS 22 C CYS 22 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf12 D SG CYS 22 D CYS 22 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
covale ? covale1 A ND2 ASN 129 B ASN 2952 1_555 E C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale2 A ND2 ASN 188 B ASN 3011 1_555 I C1 NAG . B NAG 3202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale3 A ND2 ASN 273 B ASN 3096 1_555 F C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale4 B ND2 ASN 129 A ASN 2952 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale5 B ND2 ASN 188 A ASN 3011 1_555 M C1 NAG . A NAG 3204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale6 B ND2 ASN 193 A ASN 3016 1_555 J C1 NAG . A NAG 3201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale7 B ND2 ASN 273 A ASN 3096 1_555 N C1 NAG . A NAG 3205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale8 E O4 NAG . F NAG 1 1_555 E C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale9 E O4 NAG . F NAG 2 1_555 E C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale10 E O3 BMA . F BMA 3 1_555 E C1 MAN . F MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale11 E O6 BMA . F BMA 3 1_555 E C1 MAN . F MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale12 F O4 NAG . E NAG 1 1_555 F C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
covale ? covale13 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 153 n n 
C1 C2 GOL sing 154 n n 
C1 H11 GOL sing 155 n n 
C1 H12 GOL sing 156 n n 
O1 HO1 GOL sing 157 n n 
C2 O2 GOL sing 158 n n 
C2 C3 GOL sing 159 n n 
C2 H2 GOL sing 160 n n 
O2 HO2 GOL sing 161 n n 
C3 O3 GOL sing 162 n n 
C3 H31 GOL sing 163 n n 
C3 H32 GOL sing 164 n n 
O3 HO3 GOL sing 165 n n 
#
_atom_sites.entry_id                     9E7N 
_atom_sites.fract_transf_matrix[1][1]    0.012513 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012513 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002918 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 5 GOL B 1 3201 3119 GOL GOL . 
I 6 NAG B 1 3202 3120 NAG NAG . 
J 6 NAG A 1 3201 3214 NAG NAG . 
K 7 PEG A 1 3202 3216 PEG PEG . 
L 5 GOL A 1 3203 3218 GOL GOL . 
M 6 NAG A 1 3204 3220 NAG NAG . 
N 6 NAG A 1 3205 3221 NAG NAG . 
O 8 HOH B 1 3301 63 HOH HOH . 
O 8 HOH B 2 3302 19 HOH HOH . 
O 8 HOH B 3 3303 48 HOH HOH . 
O 8 HOH B 4 3304 6 HOH HOH . 
O 8 HOH B 5 3305 61 HOH HOH . 
O 8 HOH B 6 3306 60 HOH HOH . 
O 8 HOH B 7 3307 5 HOH HOH . 
O 8 HOH B 8 3308 69 HOH HOH . 
O 8 HOH B 9 3309 21 HOH HOH . 
O 8 HOH B 10 3310 57 HOH HOH . 
O 8 HOH B 11 3311 34 HOH HOH . 
O 8 HOH B 12 3312 47 HOH HOH . 
O 8 HOH B 13 3313 58 HOH HOH . 
O 8 HOH B 14 3314 26 HOH HOH . 
O 8 HOH B 15 3315 9 HOH HOH . 
O 8 HOH B 16 3316 44 HOH HOH . 
O 8 HOH B 17 3317 17 HOH HOH . 
O 8 HOH B 18 3318 36 HOH HOH . 
O 8 HOH B 19 3319 2 HOH HOH . 
O 8 HOH B 20 3320 11 HOH HOH . 
O 8 HOH B 21 3321 35 HOH HOH . 
O 8 HOH B 22 3322 16 HOH HOH . 
O 8 HOH B 23 3323 40 HOH HOH . 
O 8 HOH B 24 3324 62 HOH HOH . 
O 8 HOH B 25 3325 30 HOH HOH . 
O 8 HOH B 26 3326 37 HOH HOH . 
O 8 HOH B 27 3327 49 HOH HOH . 
O 8 HOH B 28 3328 43 HOH HOH . 
O 8 HOH B 29 3329 52 HOH HOH . 
O 8 HOH B 30 3330 14 HOH HOH . 
O 8 HOH B 31 3331 15 HOH HOH . 
O 8 HOH B 32 3332 39 HOH HOH . 
O 8 HOH B 33 3333 23 HOH HOH . 
O 8 HOH B 34 3334 38 HOH HOH . 
O 8 HOH B 35 3335 67 HOH HOH . 
P 8 HOH A 1 3301 50 HOH HOH . 
P 8 HOH A 2 3302 70 HOH HOH . 
P 8 HOH A 3 3303 74 HOH HOH . 
P 8 HOH A 4 3304 71 HOH HOH . 
P 8 HOH A 5 3305 31 HOH HOH . 
P 8 HOH A 6 3306 7 HOH HOH . 
P 8 HOH A 7 3307 77 HOH HOH . 
P 8 HOH A 8 3308 28 HOH HOH . 
P 8 HOH A 9 3309 53 HOH HOH . 
P 8 HOH A 10 3310 3 HOH HOH . 
P 8 HOH A 11 3311 64 HOH HOH . 
P 8 HOH A 12 3312 12 HOH HOH . 
P 8 HOH A 13 3313 46 HOH HOH . 
P 8 HOH A 14 3314 54 HOH HOH . 
P 8 HOH A 15 3315 45 HOH HOH . 
P 8 HOH A 16 3316 4 HOH HOH . 
P 8 HOH A 17 3317 1 HOH HOH . 
P 8 HOH A 18 3318 33 HOH HOH . 
P 8 HOH A 19 3319 76 HOH HOH . 
P 8 HOH A 20 3320 73 HOH HOH . 
P 8 HOH A 21 3321 75 HOH HOH . 
P 8 HOH A 22 3322 65 HOH HOH . 
P 8 HOH A 23 3323 78 HOH HOH . 
P 8 HOH A 24 3324 66 HOH HOH . 
Q 8 HOH C 1 201 13 HOH HOH . 
R 8 HOH D 1 201 18 HOH HOH . 
R 8 HOH D 2 202 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 5 -14.655 -44.852 -33.854 1 80.37 ? C1 GOL 3201 B 1 
HETATM 2 O O1 GOL . . . H 5 -16.035 -44.849 -33.562 1 71.81 ? O1 GOL 3201 B 1 
HETATM 3 C C2 GOL . . . H 5 -14.107 -43.441 -33.753 1 78 ? C2 GOL 3201 B 1 
HETATM 4 O O2 GOL . . . H 5 -14.194 -43.018 -32.412 1 70.02 ? O2 GOL 3201 B 1 
HETATM 5 C C3 GOL . . . H 5 -12.682 -43.355 -34.291 1 87.45 ? C3 GOL 3201 B 1 
HETATM 6 O O3 GOL . . . H 5 -12.214 -42.026 -34.16 1 75.37 ? O3 GOL 3201 B 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          52 
_model_server_stats.element_count           6 
#