data_9E7N # _model_server_result.job_id k3Ldz01mhcV5WLqW8asVHg _model_server_result.datetime_utc '2025-08-31 12:49:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9e7n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":3201}' # _entry.id 9E7N # _exptl.entry_id 9E7N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9E7N _cell.length_a 79.919 _cell.length_b 79.919 _cell.length_c 342.703 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9E7N _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,H,I,O,R 1 1 B,C,G,J,K,L,M,N,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N ? 6 M N N ? 6 N N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 3 5 3 MAN BMA C1 O1 . O6 HO6 . sing 5 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 F 1 NAG F 1 NAG 3 n E NAG 2 F 2 NAG F 2 NAG 3 n E BMA 3 F 3 BMA F 3 BMA 3 n E MAN 4 F 4 MAN F 4 MAN 3 n E MAN 5 F 5 MAN F 5 MAN 4 n F NAG 1 E 1 NAG E 1 NAG 4 n F NAG 2 E 2 NAG E 2 NAG 4 n G NAG 1 G 1 NAG G 1 NAG 4 n G NAG 2 G 2 NAG G 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 B CYS 2835 1_555 A SG CYS 23 B CYS 2846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 163 B CYS 2986 1_555 A SG CYS 187 B CYS 3010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 201 B CYS 3024 1_555 A SG CYS 267 B CYS 3090 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 212 B CYS 3035 1_555 A SG CYS 265 B CYS 3088 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf5 A SG CYS 212 B CYS 3035 1_555 A SG CYS 265 B CYS 3088 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 B SG CYS 12 A CYS 2835 1_555 B SG CYS 23 A CYS 2846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 B SG CYS 163 A CYS 2986 1_555 B SG CYS 187 A CYS 3010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf8 B SG CYS 201 A CYS 3024 1_555 B SG CYS 267 A CYS 3090 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf9 B SG CYS 212 A CYS 3035 1_555 B SG CYS 265 A CYS 3088 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf10 B SG CYS 212 A CYS 3035 1_555 B SG CYS 265 A CYS 3088 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf11 C SG CYS 22 C CYS 22 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf12 D SG CYS 22 D CYS 22 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A ND2 ASN 129 B ASN 2952 1_555 E C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale2 A ND2 ASN 188 B ASN 3011 1_555 I C1 NAG . B NAG 3202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 273 B ASN 3096 1_555 F C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale4 B ND2 ASN 129 A ASN 2952 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale5 B ND2 ASN 188 A ASN 3011 1_555 M C1 NAG . A NAG 3204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale6 B ND2 ASN 193 A ASN 3016 1_555 J C1 NAG . A NAG 3201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 B ND2 ASN 273 A ASN 3096 1_555 N C1 NAG . A NAG 3205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale8 E O4 NAG . F NAG 1 1_555 E C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale9 E O4 NAG . F NAG 2 1_555 E C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale10 E O3 BMA . F BMA 3 1_555 E C1 MAN . F MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale11 E O6 BMA . F BMA 3 1_555 E C1 MAN . F MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale12 F O4 NAG . E NAG 1 1_555 F C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale13 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 298 n n C1 O1 NAG sing 299 n n C1 O5 NAG sing 300 n n C1 H1 NAG sing 301 n n C2 C3 NAG sing 302 n n C2 N2 NAG sing 303 n n C2 H2 NAG sing 304 n n C3 C4 NAG sing 305 n n C3 O3 NAG sing 306 n n C3 H3 NAG sing 307 n n C4 C5 NAG sing 308 n n C4 O4 NAG sing 309 n n C4 H4 NAG sing 310 n n C5 C6 NAG sing 311 n n C5 O5 NAG sing 312 n n C5 H5 NAG sing 313 n n C6 O6 NAG sing 314 n n C6 H61 NAG sing 315 n n C6 H62 NAG sing 316 n n C7 C8 NAG sing 317 n n C7 N2 NAG sing 318 n n C7 O7 NAG doub 319 n n C8 H81 NAG sing 320 n n C8 H82 NAG sing 321 n n C8 H83 NAG sing 322 n n N2 HN2 NAG sing 323 n n O1 HO1 NAG sing 324 n n O3 HO3 NAG sing 325 n n O4 HO4 NAG sing 326 n n O6 HO6 NAG sing 327 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 9E7N _atom_sites.fract_transf_matrix[1][1] 0.012513 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012513 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 5 GOL B 1 3201 3119 GOL GOL . I 6 NAG B 1 3202 3120 NAG NAG . J 6 NAG A 1 3201 3214 NAG NAG . K 7 PEG A 1 3202 3216 PEG PEG . L 5 GOL A 1 3203 3218 GOL GOL . M 6 NAG A 1 3204 3220 NAG NAG . N 6 NAG A 1 3205 3221 NAG NAG . O 8 HOH B 1 3301 63 HOH HOH . O 8 HOH B 2 3302 19 HOH HOH . O 8 HOH B 3 3303 48 HOH HOH . O 8 HOH B 4 3304 6 HOH HOH . O 8 HOH B 5 3305 61 HOH HOH . O 8 HOH B 6 3306 60 HOH HOH . O 8 HOH B 7 3307 5 HOH HOH . O 8 HOH B 8 3308 69 HOH HOH . O 8 HOH B 9 3309 21 HOH HOH . O 8 HOH B 10 3310 57 HOH HOH . O 8 HOH B 11 3311 34 HOH HOH . O 8 HOH B 12 3312 47 HOH HOH . O 8 HOH B 13 3313 58 HOH HOH . O 8 HOH B 14 3314 26 HOH HOH . O 8 HOH B 15 3315 9 HOH HOH . O 8 HOH B 16 3316 44 HOH HOH . O 8 HOH B 17 3317 17 HOH HOH . O 8 HOH B 18 3318 36 HOH HOH . O 8 HOH B 19 3319 2 HOH HOH . O 8 HOH B 20 3320 11 HOH HOH . O 8 HOH B 21 3321 35 HOH HOH . O 8 HOH B 22 3322 16 HOH HOH . O 8 HOH B 23 3323 40 HOH HOH . O 8 HOH B 24 3324 62 HOH HOH . O 8 HOH B 25 3325 30 HOH HOH . O 8 HOH B 26 3326 37 HOH HOH . O 8 HOH B 27 3327 49 HOH HOH . O 8 HOH B 28 3328 43 HOH HOH . O 8 HOH B 29 3329 52 HOH HOH . O 8 HOH B 30 3330 14 HOH HOH . O 8 HOH B 31 3331 15 HOH HOH . O 8 HOH B 32 3332 39 HOH HOH . O 8 HOH B 33 3333 23 HOH HOH . O 8 HOH B 34 3334 38 HOH HOH . O 8 HOH B 35 3335 67 HOH HOH . P 8 HOH A 1 3301 50 HOH HOH . P 8 HOH A 2 3302 70 HOH HOH . P 8 HOH A 3 3303 74 HOH HOH . P 8 HOH A 4 3304 71 HOH HOH . P 8 HOH A 5 3305 31 HOH HOH . P 8 HOH A 6 3306 7 HOH HOH . P 8 HOH A 7 3307 77 HOH HOH . P 8 HOH A 8 3308 28 HOH HOH . P 8 HOH A 9 3309 53 HOH HOH . P 8 HOH A 10 3310 3 HOH HOH . P 8 HOH A 11 3311 64 HOH HOH . P 8 HOH A 12 3312 12 HOH HOH . P 8 HOH A 13 3313 46 HOH HOH . P 8 HOH A 14 3314 54 HOH HOH . P 8 HOH A 15 3315 45 HOH HOH . P 8 HOH A 16 3316 4 HOH HOH . P 8 HOH A 17 3317 1 HOH HOH . P 8 HOH A 18 3318 33 HOH HOH . P 8 HOH A 19 3319 76 HOH HOH . P 8 HOH A 20 3320 73 HOH HOH . P 8 HOH A 21 3321 75 HOH HOH . P 8 HOH A 22 3322 65 HOH HOH . P 8 HOH A 23 3323 78 HOH HOH . P 8 HOH A 24 3324 66 HOH HOH . Q 8 HOH C 1 201 13 HOH HOH . R 8 HOH D 1 201 18 HOH HOH . R 8 HOH D 2 202 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . J 6 -30.498 13.786 -23.805 1 89.86 ? C1 NAG 3201 A 1 HETATM 2 C C2 NAG . . . J 6 -29.237 14.285 -24.531 1 90.86 ? C2 NAG 3201 A 1 HETATM 3 C C3 NAG . . . J 6 -29.316 15.787 -24.806 1 91.89 ? C3 NAG 3201 A 1 HETATM 4 C C4 NAG . . . J 6 -30.609 16.108 -25.541 1 92.57 ? C4 NAG 3201 A 1 HETATM 5 C C5 NAG . . . J 6 -31.774 15.593 -24.688 1 97.22 ? C5 NAG 3201 A 1 HETATM 6 C C6 NAG . . . J 6 -33.132 15.892 -25.282 1 98.91 ? C6 NAG 3201 A 1 HETATM 7 C C7 NAG . . . J 6 -27.032 13.227 -24.263 1 90.31 ? C7 NAG 3201 A 1 HETATM 8 C C8 NAG . . . J 6 -25.884 13.033 -23.302 1 84.18 ? C8 NAG 3201 A 1 HETATM 9 N N2 NAG . . . J 6 -28.046 13.973 -23.786 1 83.21 ? N2 NAG 3201 A 1 HETATM 10 O O3 NAG . . . J 6 -28.179 16.166 -25.538 1 92.03 ? O3 NAG 3201 A 1 HETATM 11 O O4 NAG . . . J 6 -30.663 17.504 -25.74 1 105.71 ? O4 NAG 3201 A 1 HETATM 12 O O5 NAG . . . J 6 -31.641 14.191 -24.527 1 96.08 ? O5 NAG 3201 A 1 HETATM 13 O O6 NAG . . . J 6 -33.134 15.495 -26.633 1 101.8 ? O6 NAG 3201 A 1 HETATM 14 O O7 NAG . . . J 6 -27.023 12.735 -25.384 1 83.37 ? O7 NAG 3201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 501 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #