data_9E7O # _model_server_result.job_id PqFee55NPD_Nx_y6N9m-xg _model_server_result.datetime_utc '2025-09-05 14:17:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9e7o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 9E7O # _exptl.entry_id 9E7O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.92 _cell.angle_gamma 90 _cell.entry_id 9E7O _cell.length_a 135.494 _cell.length_b 62.824 _cell.length_c 56.481 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9E7O _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 D 1 NAG D 1 NAG 3 n C NAG 2 D 2 NAG D 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? disulf ? disulf2 B SG CYS 12 B CYS 2835 1_555 B SG CYS 23 B CYS 2846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 B SG CYS 163 B CYS 2986 1_555 B SG CYS 187 B CYS 3010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf4 B SG CYS 201 B CYS 3024 1_555 B SG CYS 267 B CYS 3090 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf5 B SG CYS 212 B CYS 3035 1_555 B SG CYS 265 B CYS 3088 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.995 ? disulf ? disulf6 B SG CYS 212 B CYS 3035 1_555 B SG CYS 265 B CYS 3088 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.017 ? covale ? covale1 B ND2 ASN 129 B ASN 2952 1_555 C C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 B ND2 ASN 273 B ASN 3096 1_555 I C1 NAG . B NAG 3203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 C O4 NAG . D NAG 1 1_555 C C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 9E7O _atom_sites.fract_transf_matrix[1][1] 0.00738 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001158 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015917 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017922 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO A 1 201 201 EDO EDO . E 4 EDO A 1 202 202 EDO EDO . F 4 EDO A 1 203 203 EDO EDO . G 4 EDO B 1 3201 3114 EDO EDO . H 5 NAG B 1 3202 3116 NAG NAG . I 5 NAG B 1 3203 3117 NAG NAG . J 6 HOH A 1 301 70 HOH HOH . J 6 HOH A 2 302 40 HOH HOH . J 6 HOH A 3 303 50 HOH HOH . J 6 HOH A 4 304 159 HOH HOH . J 6 HOH A 5 305 62 HOH HOH . J 6 HOH A 6 306 161 HOH HOH . J 6 HOH A 7 307 101 HOH HOH . J 6 HOH A 8 308 5 HOH HOH . J 6 HOH A 9 309 105 HOH HOH . J 6 HOH A 10 310 129 HOH HOH . J 6 HOH A 11 311 22 HOH HOH . J 6 HOH A 12 312 131 HOH HOH . J 6 HOH A 13 313 14 HOH HOH . J 6 HOH A 14 314 74 HOH HOH . J 6 HOH A 15 315 30 HOH HOH . J 6 HOH A 16 316 66 HOH HOH . J 6 HOH A 17 317 26 HOH HOH . J 6 HOH A 18 318 154 HOH HOH . J 6 HOH A 19 319 156 HOH HOH . J 6 HOH A 20 320 137 HOH HOH . J 6 HOH A 21 321 94 HOH HOH . J 6 HOH A 22 322 38 HOH HOH . J 6 HOH A 23 323 54 HOH HOH . J 6 HOH A 24 324 157 HOH HOH . J 6 HOH A 25 325 18 HOH HOH . J 6 HOH A 26 326 160 HOH HOH . J 6 HOH A 27 327 88 HOH HOH . J 6 HOH A 28 328 76 HOH HOH . J 6 HOH A 29 329 83 HOH HOH . J 6 HOH A 30 330 90 HOH HOH . J 6 HOH A 31 331 51 HOH HOH . J 6 HOH A 32 332 31 HOH HOH . K 6 HOH B 1 3301 20 HOH HOH . K 6 HOH B 2 3302 89 HOH HOH . K 6 HOH B 3 3303 37 HOH HOH . K 6 HOH B 4 3304 116 HOH HOH . K 6 HOH B 5 3305 71 HOH HOH . K 6 HOH B 6 3306 127 HOH HOH . K 6 HOH B 7 3307 32 HOH HOH . K 6 HOH B 8 3308 57 HOH HOH . K 6 HOH B 9 3309 84 HOH HOH . K 6 HOH B 10 3310 93 HOH HOH . K 6 HOH B 11 3311 60 HOH HOH . K 6 HOH B 12 3312 104 HOH HOH . K 6 HOH B 13 3313 49 HOH HOH . K 6 HOH B 14 3314 121 HOH HOH . K 6 HOH B 15 3315 130 HOH HOH . K 6 HOH B 16 3316 13 HOH HOH . K 6 HOH B 17 3317 15 HOH HOH . K 6 HOH B 18 3318 56 HOH HOH . K 6 HOH B 19 3319 162 HOH HOH . K 6 HOH B 20 3320 7 HOH HOH . K 6 HOH B 21 3321 114 HOH HOH . K 6 HOH B 22 3322 95 HOH HOH . K 6 HOH B 23 3323 124 HOH HOH . K 6 HOH B 24 3324 97 HOH HOH . K 6 HOH B 25 3325 9 HOH HOH . K 6 HOH B 26 3326 8 HOH HOH . K 6 HOH B 27 3327 65 HOH HOH . K 6 HOH B 28 3328 47 HOH HOH . K 6 HOH B 29 3329 140 HOH HOH . K 6 HOH B 30 3330 10 HOH HOH . K 6 HOH B 31 3331 2 HOH HOH . K 6 HOH B 32 3332 147 HOH HOH . K 6 HOH B 33 3333 55 HOH HOH . K 6 HOH B 34 3334 35 HOH HOH . K 6 HOH B 35 3335 3 HOH HOH . K 6 HOH B 36 3336 28 HOH HOH . K 6 HOH B 37 3337 149 HOH HOH . K 6 HOH B 38 3338 128 HOH HOH . K 6 HOH B 39 3339 98 HOH HOH . K 6 HOH B 40 3340 61 HOH HOH . K 6 HOH B 41 3341 113 HOH HOH . K 6 HOH B 42 3342 91 HOH HOH . K 6 HOH B 43 3343 16 HOH HOH . K 6 HOH B 44 3344 23 HOH HOH . K 6 HOH B 45 3345 58 HOH HOH . K 6 HOH B 46 3346 100 HOH HOH . K 6 HOH B 47 3347 85 HOH HOH . K 6 HOH B 48 3348 158 HOH HOH . K 6 HOH B 49 3349 133 HOH HOH . K 6 HOH B 50 3350 41 HOH HOH . K 6 HOH B 51 3351 4 HOH HOH . K 6 HOH B 52 3352 112 HOH HOH . K 6 HOH B 53 3353 148 HOH HOH . K 6 HOH B 54 3354 19 HOH HOH . K 6 HOH B 55 3355 150 HOH HOH . K 6 HOH B 56 3356 1 HOH HOH . K 6 HOH B 57 3357 11 HOH HOH . K 6 HOH B 58 3358 77 HOH HOH . K 6 HOH B 59 3359 107 HOH HOH . K 6 HOH B 60 3360 80 HOH HOH . K 6 HOH B 61 3361 27 HOH HOH . K 6 HOH B 62 3362 12 HOH HOH . K 6 HOH B 63 3363 44 HOH HOH . K 6 HOH B 64 3364 122 HOH HOH . K 6 HOH B 65 3365 17 HOH HOH . K 6 HOH B 66 3366 59 HOH HOH . K 6 HOH B 67 3367 21 HOH HOH . K 6 HOH B 68 3368 75 HOH HOH . K 6 HOH B 69 3369 123 HOH HOH . K 6 HOH B 70 3370 108 HOH HOH . K 6 HOH B 71 3371 163 HOH HOH . K 6 HOH B 72 3372 106 HOH HOH . K 6 HOH B 73 3373 43 HOH HOH . K 6 HOH B 74 3374 33 HOH HOH . K 6 HOH B 75 3375 155 HOH HOH . K 6 HOH B 76 3376 68 HOH HOH . K 6 HOH B 77 3377 24 HOH HOH . K 6 HOH B 78 3378 46 HOH HOH . K 6 HOH B 79 3379 69 HOH HOH . K 6 HOH B 80 3380 25 HOH HOH . K 6 HOH B 81 3381 138 HOH HOH . K 6 HOH B 82 3382 152 HOH HOH . K 6 HOH B 83 3383 29 HOH HOH . K 6 HOH B 84 3384 34 HOH HOH . K 6 HOH B 85 3385 36 HOH HOH . K 6 HOH B 86 3386 103 HOH HOH . K 6 HOH B 87 3387 151 HOH HOH . K 6 HOH B 88 3388 72 HOH HOH . K 6 HOH B 89 3389 81 HOH HOH . K 6 HOH B 90 3390 78 HOH HOH . K 6 HOH B 91 3391 96 HOH HOH . K 6 HOH B 92 3392 39 HOH HOH . K 6 HOH B 93 3393 99 HOH HOH . K 6 HOH B 94 3394 87 HOH HOH . K 6 HOH B 95 3395 64 HOH HOH . K 6 HOH B 96 3396 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 -28.856 1.782 -18.846 1 45.26 ? C1 EDO 202 A 1 HETATM 2 O O1 EDO . . . E 4 -27.949 1.074 -18.032 1 51.85 ? O1 EDO 202 A 1 HETATM 3 C C2 EDO . . . E 4 -29.451 2.899 -18.029 1 55.24 ? C2 EDO 202 A 1 HETATM 4 O O2 EDO . . . E 4 -28.497 3.284 -17.05 1 54.71 ? O2 EDO 202 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #