data_9E8G
#
_model_server_result.job_id            hDkQ7axsq4lxdN6GXFe4VQ 
_model_server_result.datetime_utc      '2024-12-28 01:40:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9e8g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"JA","auth_seq_id":501}' 
#
_entry.id    9E8G 
#
_exptl.entry_id    9E8G 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          36 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    35-meric 
_pdbx_struct_assembly.oligomeric_count      35 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 36 JA N N 
? 36 LA N N 
? 36 SA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 G SG CYS 115 G CYS 115 1_555 G SG CYS 154 G CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 H SG CYS 137 H CYS 137 1_555 H SG CYS 213 H CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf3 M SG CYS 42 M CYS 41 1_555 M SG CYS 187 M CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 T SG CYS 633 U CYS 633 1_555 T SG CYS 659 U CYS 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc1 A OG1 THR 223 A THR 223 1_555 KA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc2 JA O2G ATP . A ATP 501 1_555 KA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
metalc ? metalc3 B OG1 THR 233 B THR 233 1_555 MA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? 
metalc ? metalc4 LA O2G ATP . B ATP 501 1_555 MA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc5 LA O2B ATP . B ATP 501 1_555 MA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc6 C OG1 THR 197 C THR 197 1_555 OA MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc7 NA O2B ADP . C ADP 501 1_555 OA MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc8 D OG1 THR 213 D THR 213 1_555 QA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? 
metalc ? metalc9 F OG1 THR 234 F THR 234 1_555 TA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? 
metalc ? metalc10 F OD1 ASP 286 F ASP 286 1_555 TA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? 
metalc ? metalc11 SA O3G ATP . F ATP 501 1_555 TA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc12 BA NE2 HIS 113 c HIS 113 1_555 UA ZN ZN . u ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? 
metalc ? metalc13 BA NE2 HIS 115 c HIS 115 1_555 UA ZN ZN . u ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc14 BA OD1 ASP 126 c ASP 126 1_555 UA ZN ZN . u ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc15 BA OD2 ASP 126 c ASP 126 1_555 UA ZN ZN . u ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? 
metalc ? metalc16 HA ND1 HIS 289 u HIS 289 1_555 UA ZN ZN . u ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? 
metalc ? metalc17 HA NE2 HIS 289 u HIS 289 1_555 UA ZN ZN . u ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     9E8G 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
JA 36 ATP A 1 501 501 ATP ATP . 
KA 37 MG A 1 502 502 MG MG . 
LA 36 ATP B 1 501 501 ATP ATP . 
MA 37 MG B 1 502 502 MG MG . 
NA 38 ADP C 1 501 501 ADP ADP . 
OA 37 MG C 1 502 502 MG MG . 
PA 38 ADP D 1 501 501 ADP ADP . 
QA 37 MG D 1 502 502 MG MG . 
RA 38 ADP E 1 501 501 ADP ADP . 
SA 36 ATP F 1 501 501 ATP ATP . 
TA 37 MG F 1 502 502 MG MG . 
UA 39 ZN u 1 301 311 ZN ZN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . JA 36 216.975 167.691 197.082 1 69.01 ? PG ATP 501 A 1 
HETATM 2 O O1G ATP . . . JA 36 215.684 167.844 197.833 1 84.89 ? O1G ATP 501 A 1 
HETATM 3 O O2G ATP . . . JA 36 217.391 168.954 196.385 1 75.43 ? O2G ATP 501 A 1 
HETATM 4 O O3G ATP . . . JA 36 216.98 166.493 196.171 1 68.9 ? O3G ATP 501 A 1 
HETATM 5 P PB ATP . . . JA 36 219.559 166.754 198.06 1 72.72 ? PB ATP 501 A 1 
HETATM 6 O O1B ATP . . . JA 36 220.421 167.709 197.312 1 76.91 ? O1B ATP 501 A 1 
HETATM 7 O O2B ATP . . . JA 36 219.429 165.343 197.599 1 75.14 ? O2B ATP 501 A 1 
HETATM 8 O O3B ATP . . . JA 36 218.104 167.4 198.189 1 59.3 ? O3B ATP 501 A 1 
HETATM 9 P PA ATP . . . JA 36 221.144 167.69 200.298 1 72.03 ? PA ATP 501 A 1 
HETATM 10 O O1A ATP . . . JA 36 220.623 169.086 200.305 1 77.82 ? O1A ATP 501 A 1 
HETATM 11 O O2A ATP . . . JA 36 222.491 167.453 199.706 1 75.36 ? O2A ATP 501 A 1 
HETATM 12 O O3A ATP . . . JA 36 220.072 166.753 199.57 1 55.29 ? O3A ATP 501 A 1 
HETATM 13 O O5' ATP . . . JA 36 221.115 167.108 201.786 1 69.39 ? O5' ATP 501 A 1 
HETATM 14 C C5' ATP . . . JA 36 221.031 168.053 202.874 1 67.31 ? C5' ATP 501 A 1 
HETATM 15 C C4' ATP . . . JA 36 222.056 167.703 203.922 1 64.43 ? C4' ATP 501 A 1 
HETATM 16 O O4' ATP . . . JA 36 221.934 166.298 204.251 1 64.6 ? O4' ATP 501 A 1 
HETATM 17 C C3' ATP . . . JA 36 223.524 167.869 203.519 1 67.92 ? C3' ATP 501 A 1 
HETATM 18 O O3' ATP . . . JA 36 223.971 169.203 203.728 1 73.72 ? O3' ATP 501 A 1 
HETATM 19 C C2' ATP . . . JA 36 224.21 166.885 204.467 1 71.25 ? C2' ATP 501 A 1 
HETATM 20 O O2' ATP . . . JA 36 224.429 167.421 205.753 1 83.33 ? O2' ATP 501 A 1 
HETATM 21 C C1' ATP . . . JA 36 223.201 165.742 204.51 1 65.42 ? C1' ATP 501 A 1 
HETATM 22 N N9 ATP . . . JA 36 223.451 164.725 203.513 1 64.84 ? N9 ATP 501 A 1 
HETATM 23 C C8 ATP . . . JA 36 222.664 164.393 202.447 1 70.73 ? C8 ATP 501 A 1 
HETATM 24 N N7 ATP . . . JA 36 223.177 163.425 201.726 1 66.83 ? N7 ATP 501 A 1 
HETATM 25 C C5 ATP . . . JA 36 224.371 163.11 202.359 1 63.26 ? C5 ATP 501 A 1 
HETATM 26 C C6 ATP . . . JA 36 225.376 162.169 202.085 1 73.51 ? C6 ATP 501 A 1 
HETATM 27 N N6 ATP . . . JA 36 225.343 161.333 201.053 1 78.5 ? N6 ATP 501 A 1 
HETATM 28 N N1 ATP . . . JA 36 226.433 162.124 202.927 1 80.76 ? N1 ATP 501 A 1 
HETATM 29 C C2 ATP . . . JA 36 226.462 162.965 203.966 1 78.32 ? C2 ATP 501 A 1 
HETATM 30 N N3 ATP . . . JA 36 225.577 163.89 204.32 1 69.89 ? N3 ATP 501 A 1 
HETATM 31 C C4 ATP . . . JA 36 224.545 163.908 203.464 1 62.45 ? C4 ATP 501 A 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    339 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           31 
#