data_9E8G # _model_server_result.job_id HcQiJSG-Fl6_dCuYYfnxRQ _model_server_result.datetime_utc '2024-12-28 02:07:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9e8g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"SA","auth_seq_id":501}' # _entry.id 9E8G # _exptl.entry_id 9E8G _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 36 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 35-meric _pdbx_struct_assembly.oligomeric_count 35 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 36 JA N N ? 36 LA N N ? 36 SA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 G SG CYS 115 G CYS 115 1_555 G SG CYS 154 G CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 H SG CYS 137 H CYS 137 1_555 H SG CYS 213 H CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 M SG CYS 42 M CYS 41 1_555 M SG CYS 187 M CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 T SG CYS 633 U CYS 633 1_555 T SG CYS 659 U CYS 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A OG1 THR 223 A THR 223 1_555 KA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc2 JA O2G ATP . A ATP 501 1_555 KA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc3 B OG1 THR 233 B THR 233 1_555 MA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? metalc ? metalc4 LA O2G ATP . B ATP 501 1_555 MA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc5 LA O2B ATP . B ATP 501 1_555 MA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc6 C OG1 THR 197 C THR 197 1_555 OA MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc7 NA O2B ADP . C ADP 501 1_555 OA MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc8 D OG1 THR 213 D THR 213 1_555 QA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc9 F OG1 THR 234 F THR 234 1_555 TA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc10 F OD1 ASP 286 F ASP 286 1_555 TA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc11 SA O3G ATP . F ATP 501 1_555 TA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc12 BA NE2 HIS 113 c HIS 113 1_555 UA ZN ZN . u ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? metalc ? metalc13 BA NE2 HIS 115 c HIS 115 1_555 UA ZN ZN . u ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc14 BA OD1 ASP 126 c ASP 126 1_555 UA ZN ZN . u ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc15 BA OD2 ASP 126 c ASP 126 1_555 UA ZN ZN . u ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc16 HA ND1 HIS 289 u HIS 289 1_555 UA ZN ZN . u ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc17 HA NE2 HIS 289 u HIS 289 1_555 UA ZN ZN . u ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 9E8G _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code JA 36 ATP A 1 501 501 ATP ATP . KA 37 MG A 1 502 502 MG MG . LA 36 ATP B 1 501 501 ATP ATP . MA 37 MG B 1 502 502 MG MG . NA 38 ADP C 1 501 501 ADP ADP . OA 37 MG C 1 502 502 MG MG . PA 38 ADP D 1 501 501 ADP ADP . QA 37 MG D 1 502 502 MG MG . RA 38 ADP E 1 501 501 ADP ADP . SA 36 ATP F 1 501 501 ATP ATP . TA 37 MG F 1 502 502 MG MG . UA 39 ZN u 1 301 311 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . SA 36 217.875 169.559 169.278 1 82.21 ? PG ATP 501 F 1 HETATM 2 O O1G ATP . . . SA 36 218.917 169.317 170.315 1 91.18 ? O1G ATP 501 F 1 HETATM 3 O O2G ATP . . . SA 36 216.456 169.237 169.751 1 82.92 ? O2G ATP 501 F 1 HETATM 4 O O3G ATP . . . SA 36 217.892 170.972 168.704 1 73.37 ? O3G ATP 501 F 1 HETATM 5 P PB ATP . . . SA 36 219.24 168.209 166.981 1 103.73 ? PB ATP 501 F 1 HETATM 6 O O1B ATP . . . SA 36 219.309 166.753 166.757 1 95.48 ? O1B ATP 501 F 1 HETATM 7 O O2B ATP . . . SA 36 219.022 169.055 165.727 1 108.17 ? O2B ATP 501 F 1 HETATM 8 O O3B ATP . . . SA 36 218.1 168.61 168.019 1 82.29 ? O3B ATP 501 F 1 HETATM 9 P PA ATP . . . SA 36 222.068 168.99 167.295 1 96.32 ? PA ATP 501 F 1 HETATM 10 O O1A ATP . . . SA 36 222.208 169.252 165.848 1 106.52 ? O1A ATP 501 F 1 HETATM 11 O O2A ATP . . . SA 36 222.611 170.097 168.199 1 95.91 ? O2A ATP 501 F 1 HETATM 12 O O3A ATP . . . SA 36 220.552 168.756 167.693 1 80.85 ? O3A ATP 501 F 1 HETATM 13 O O5' ATP . . . SA 36 222.779 167.635 167.68 1 76.81 ? O5' ATP 501 F 1 HETATM 14 C C5' ATP . . . SA 36 223.444 167.47 168.948 1 73.27 ? C5' ATP 501 F 1 HETATM 15 C C4' ATP . . . SA 36 224.509 166.417 168.78 1 68.11 ? C4' ATP 501 F 1 HETATM 16 O O4' ATP . . . SA 36 223.925 165.236 168.196 1 67.13 ? O4' ATP 501 F 1 HETATM 17 C C3' ATP . . . SA 36 225.68 166.828 167.887 1 66.4 ? C3' ATP 501 F 1 HETATM 18 O O3' ATP . . . SA 36 226.918 166.748 168.584 1 74.12 ? O3' ATP 501 F 1 HETATM 19 C C2' ATP . . . SA 36 225.615 165.858 166.699 1 67.98 ? C2' ATP 501 F 1 HETATM 20 O O2' ATP . . . SA 36 226.913 165.416 166.321 1 75.93 ? O2' ATP 501 F 1 HETATM 21 C C1' ATP . . . SA 36 224.812 164.685 167.255 1 64.42 ? C1' ATP 501 F 1 HETATM 22 N N9 ATP . . . SA 36 224.019 163.994 166.246 1 69.23 ? N9 ATP 501 F 1 HETATM 23 C C8 ATP . . . SA 36 222.692 163.665 166.329 1 77.15 ? C8 ATP 501 F 1 HETATM 24 N N7 ATP . . . SA 36 222.224 163.052 165.27 1 75.74 ? N7 ATP 501 F 1 HETATM 25 C C5 ATP . . . SA 36 223.321 162.976 164.426 1 64 ? C5 ATP 501 F 1 HETATM 26 C C6 ATP . . . SA 36 223.489 162.442 163.136 1 67.18 ? C6 ATP 501 F 1 HETATM 27 N N6 ATP . . . SA 36 222.513 161.852 162.44 1 72.79 ? N6 ATP 501 F 1 HETATM 28 N N1 ATP . . . SA 36 224.712 162.535 162.573 1 73.86 ? N1 ATP 501 F 1 HETATM 29 C C2 ATP . . . SA 36 225.693 163.12 163.263 1 72.36 ? C2 ATP 501 F 1 HETATM 30 N N3 ATP . . . SA 36 225.653 163.66 164.482 1 65.44 ? N3 ATP 501 F 1 HETATM 31 C C4 ATP . . . SA 36 224.433 163.553 165.014 1 63.28 ? C4 ATP 501 F 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 192 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #