data_9E8H # _model_server_result.job_id Hyn2zjfIzB4quLJftYf1Wg _model_server_result.datetime_utc '2024-12-28 01:53:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9e8h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HA","auth_seq_id":501}' # _entry.id 9E8H # _exptl.entry_id 9E8H _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 28 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 27-meric _pdbx_struct_assembly.oligomeric_count 27 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 28 BA N N ? 28 DA N N ? 28 HA N N ? 28 KA N N ? 28 LA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 G SG CYS 115 G CYS 115 1_555 G SG CYS 154 G CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A OG1 THR 223 A THR 223 1_555 CA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc2 BA O3G ATP . A ATP 501 1_555 CA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc3 BA O2B ATP . A ATP 501 1_555 CA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc4 B OG1 THR 233 B THR 233 1_555 EA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc5 DA O1G ATP . B ATP 501 1_555 EA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc6 DA O1B ATP . B ATP 501 1_555 EA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? metalc ? metalc7 FA O2B ADP . C ADP 501 1_555 GA MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? metalc ? metalc8 D OG1 THR 213 D THR 213 1_555 IA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc9 HA O3G ATP . D ATP 501 1_555 IA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc10 HA O2B ATP . D ATP 501 1_555 IA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? metalc ? metalc11 E OG1 THR 181 E THR 181 1_555 JA MG MG . E MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc12 JA MG MG . E MG 401 1_555 KA O2G ATP . E ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc13 JA MG MG . E MG 401 1_555 KA O2B ATP . E ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? metalc ? metalc14 F OG1 THR 234 F THR 234 1_555 MA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc15 LA O3G ATP . F ATP 501 1_555 MA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc16 LA O2B ATP . F ATP 501 1_555 MA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc17 V OE2 GLU 52 c GLU 52 1_555 NA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc18 V NE2 HIS 113 c HIS 113 1_555 NA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc19 V NE2 HIS 115 c HIS 115 1_555 NA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc20 V OD1 ASP 126 c ASP 126 1_555 NA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 9E8H _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code BA 28 ATP A 1 501 501 ATP ATP . CA 29 MG A 1 502 502 MG MG . DA 28 ATP B 1 501 501 ATP ATP . EA 29 MG B 1 502 502 MG MG . FA 30 ADP C 1 501 501 ADP ADP . GA 29 MG C 1 502 502 MG MG . HA 28 ATP D 1 501 501 ATP ATP . IA 29 MG D 1 502 502 MG MG . JA 29 MG E 1 401 502 MG MG . KA 28 ATP E 1 402 501 ATP ATP . LA 28 ATP F 1 501 501 ATP ATP . MA 29 MG F 1 502 502 MG MG . NA 31 ZN c 1 501 401 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . HA 28 172.575 178.572 163.46 1 43.58 ? PG ATP 501 D 1 HETATM 2 O O1G ATP . . . HA 28 173.508 177.683 162.716 1 42.53 ? O1G ATP 501 D 1 HETATM 3 O O2G ATP . . . HA 28 172.227 178.076 164.862 1 36.18 ? O2G ATP 501 D 1 HETATM 4 O O3G ATP . . . HA 28 173.056 180.024 163.556 1 49.7 ? O3G ATP 501 D 1 HETATM 5 P PB ATP . . . HA 28 169.655 179.006 163.017 1 30.52 ? PB ATP 501 D 1 HETATM 6 O O1B ATP . . . HA 28 169.116 178.132 164.074 1 37.76 ? O1B ATP 501 D 1 HETATM 7 O O2B ATP . . . HA 28 169.577 180.51 163.27 1 37.1 ? O2B ATP 501 D 1 HETATM 8 O O3B ATP . . . HA 28 171.17 178.666 162.709 1 31.86 ? O3B ATP 501 D 1 HETATM 9 P PA ATP . . . HA 28 168.581 179.563 160.322 1 37.18 ? PA ATP 501 D 1 HETATM 10 O O1A ATP . . . HA 28 167.193 180.063 160.39 1 35.9 ? O1A ATP 501 D 1 HETATM 11 O O2A ATP . . . HA 28 169.648 180.643 160.161 1 43.86 ? O2A ATP 501 D 1 HETATM 12 O O3A ATP . . . HA 28 168.958 178.725 161.615 1 34.77 ? O3A ATP 501 D 1 HETATM 13 O O5' ATP . . . HA 28 168.74 178.525 159.144 1 37.19 ? O5' ATP 501 D 1 HETATM 14 C C5' ATP . . . HA 28 168.796 178.96 157.769 1 38.75 ? C5' ATP 501 D 1 HETATM 15 C C4' ATP . . . HA 28 168.113 177.955 156.875 1 35.88 ? C4' ATP 501 D 1 HETATM 16 O O4' ATP . . . HA 28 167.171 177.18 157.643 1 36.13 ? O4' ATP 501 D 1 HETATM 17 C C3' ATP . . . HA 28 167.338 178.568 155.705 1 33.81 ? C3' ATP 501 D 1 HETATM 18 O O3' ATP . . . HA 28 167.892 178.176 154.455 1 40.63 ? O3' ATP 501 D 1 HETATM 19 C C2' ATP . . . HA 28 165.9 178.059 155.889 1 35.64 ? C2' ATP 501 D 1 HETATM 20 O O2' ATP . . . HA 28 165.345 177.641 154.647 1 41.58 ? O2' ATP 501 D 1 HETATM 21 C C1' ATP . . . HA 28 166.078 176.859 156.817 1 34.42 ? C1' ATP 501 D 1 HETATM 22 N N9 ATP . . . HA 28 164.931 176.591 157.68 1 33.96 ? N9 ATP 501 D 1 HETATM 23 C C8 ATP . . . HA 28 164.965 176.395 159.036 1 36.87 ? C8 ATP 501 D 1 HETATM 24 N N7 ATP . . . HA 28 163.792 176.176 159.576 1 38.8 ? N7 ATP 501 D 1 HETATM 25 C C5 ATP . . . HA 28 162.92 176.229 158.499 1 34.55 ? C5 ATP 501 D 1 HETATM 26 C C6 ATP . . . HA 28 161.523 176.087 158.401 1 37.73 ? C6 ATP 501 D 1 HETATM 27 N N6 ATP . . . HA 28 160.726 175.841 159.445 1 39.29 ? N6 ATP 501 D 1 HETATM 28 N N1 ATP . . . HA 28 160.964 176.202 157.177 1 41.7 ? N1 ATP 501 D 1 HETATM 29 C C2 ATP . . . HA 28 161.754 176.451 156.13 1 37.69 ? C2 ATP 501 D 1 HETATM 30 N N3 ATP . . . HA 28 163.079 176.609 156.101 1 35.75 ? N3 ATP 501 D 1 HETATM 31 C C4 ATP . . . HA 28 163.608 176.485 157.323 1 32.88 ? C4 ATP 501 D 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 100 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #