data_9E8I
#
_model_server_result.job_id            9DKRprp8l_7MgjYXkBOV6Q 
_model_server_result.datetime_utc      '2024-12-28 01:58:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9e8i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"HA","auth_seq_id":501}' 
#
_entry.id    9E8I 
#
_exptl.entry_id    9E8I 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          28 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    27-meric 
_pdbx_struct_assembly.oligomeric_count      27 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 28 BA N N 
? 28 DA N N 
? 28 HA N N 
? 28 JA N N 
? 28 LA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 G SG CYS 115 G CYS 115 1_555 G SG CYS 154 G CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc1 A OG1 THR 223 A THR 223 1_555 CA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? 
metalc ? metalc2 BA O3G ATP . A ATP 501 1_555 CA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc3 BA O2B ATP . A ATP 501 1_555 CA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc4 B OG1 THR 233 B THR 233 1_555 EA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc5 DA O1G ATP . B ATP 501 1_555 EA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc6 DA O1B ATP . B ATP 501 1_555 EA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? 
metalc ? metalc7 D OG1 THR 213 D THR 213 1_555 IA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? 
metalc ? metalc8 HA O3G ATP . D ATP 501 1_555 IA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? 
metalc ? metalc9 HA O2B ATP . D ATP 501 1_555 IA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.867 ? 
metalc ? metalc10 E OG1 THR 181 E THR 181 1_555 KA MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? 
metalc ? metalc11 JA O2G ATP . E ATP 501 1_555 KA MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc12 JA O2B ATP . E ATP 501 1_555 KA MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc13 LA O3G ATP . F ATP 501 1_555 MA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc14 V OE2 GLU 52 c GLU 52 1_555 NA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc15 V NE2 HIS 113 c HIS 113 1_555 NA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc16 V NE2 HIS 115 c HIS 115 1_555 NA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc17 V OD1 ASP 126 c ASP 126 1_555 NA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc18 V OD2 ASP 126 c ASP 126 1_555 NA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     9E8I 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
BA 28 ATP A 1 501 501 ATP ATP . 
CA 29 MG A 1 502 502 MG MG . 
DA 28 ATP B 1 501 501 ATP ATP . 
EA 29 MG B 1 502 502 MG MG . 
FA 30 ADP C 1 501 501 ADP ADP . 
GA 29 MG C 1 502 502 MG MG . 
HA 28 ATP D 1 501 501 ATP ATP . 
IA 29 MG D 1 502 502 MG MG . 
JA 28 ATP E 1 501 501 ATP ATP . 
KA 29 MG E 1 502 502 MG MG . 
LA 28 ATP F 1 501 501 ATP ATP . 
MA 29 MG F 1 502 502 MG MG . 
NA 31 ZN c 1 501 401 ZN ZN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . HA 28 172.564 178.575 163.502 1 48.62 ? PG ATP 501 D 1 
HETATM 2 O O1G ATP . . . HA 28 173.492 177.66 162.782 1 48.99 ? O1G ATP 501 D 1 
HETATM 3 O O2G ATP . . . HA 28 172.233 178.131 164.922 1 37.72 ? O2G ATP 501 D 1 
HETATM 4 O O3G ATP . . . HA 28 173.043 180.029 163.541 1 50.94 ? O3G ATP 501 D 1 
HETATM 5 P PB ATP . . . HA 28 169.652 179.032 163.063 1 33.84 ? PB ATP 501 D 1 
HETATM 6 O O1B ATP . . . HA 28 169.081 178.187 164.127 1 40.89 ? O1B ATP 501 D 1 
HETATM 7 O O2B ATP . . . HA 28 169.622 180.538 163.303 1 42.74 ? O2B ATP 501 D 1 
HETATM 8 O O3B ATP . . . HA 28 171.153 178.639 162.764 1 39.64 ? O3B ATP 501 D 1 
HETATM 9 P PA ATP . . . HA 28 168.617 179.597 160.356 1 38.5 ? PA ATP 501 D 1 
HETATM 10 O O1A ATP . . . HA 28 167.216 180.06 160.364 1 39.02 ? O1A ATP 501 D 1 
HETATM 11 O O2A ATP . . . HA 28 169.663 180.704 160.255 1 47.72 ? O2A ATP 501 D 1 
HETATM 12 O O3A ATP . . . HA 28 168.952 178.762 161.66 1 36.02 ? O3A ATP 501 D 1 
HETATM 13 O O5' ATP . . . HA 28 168.855 178.576 159.176 1 43.14 ? O5' ATP 501 D 1 
HETATM 14 C C5' ATP . . . HA 28 168.85 179.012 157.8 1 43.32 ? C5' ATP 501 D 1 
HETATM 15 C C4' ATP . . . HA 28 168.215 177.959 156.927 1 41.52 ? C4' ATP 501 D 1 
HETATM 16 O O4' ATP . . . HA 28 167.281 177.19 157.706 1 41.67 ? O4' ATP 501 D 1 
HETATM 17 C C3' ATP . . . HA 28 167.439 178.511 155.73 1 39.03 ? C3' ATP 501 D 1 
HETATM 18 O O3' ATP . . . HA 28 168.12 178.243 154.509 1 49.16 ? O3' ATP 501 D 1 
HETATM 19 C C2' ATP . . . HA 28 166.072 177.808 155.792 1 39.18 ? C2' ATP 501 D 1 
HETATM 20 O O2' ATP . . . HA 28 165.727 177.219 154.544 1 44.5 ? O2' ATP 501 D 1 
HETATM 21 C C1' ATP . . . HA 28 166.264 176.724 156.855 1 39.53 ? C1' ATP 501 D 1 
HETATM 22 N N9 ATP . . . HA 28 165.088 176.469 157.684 1 37.77 ? N9 ATP 501 D 1 
HETATM 23 C C8 ATP . . . HA 28 165.099 176.242 159.036 1 40.61 ? C8 ATP 501 D 1 
HETATM 24 N N7 ATP . . . HA 28 163.914 176.049 159.558 1 43.77 ? N7 ATP 501 D 1 
HETATM 25 C C5 ATP . . . HA 28 163.057 176.16 158.474 1 38.79 ? C5 ATP 501 D 1 
HETATM 26 C C6 ATP . . . HA 28 161.658 176.06 158.359 1 41.57 ? C6 ATP 501 D 1 
HETATM 27 N N6 ATP . . . HA 28 160.843 175.81 159.389 1 45.04 ? N6 ATP 501 D 1 
HETATM 28 N N1 ATP . . . HA 28 161.115 176.221 157.134 1 45.08 ? N1 ATP 501 D 1 
HETATM 29 C C2 ATP . . . HA 28 161.923 176.47 156.101 1 42.98 ? C2 ATP 501 D 1 
HETATM 30 N N3 ATP . . . HA 28 163.252 176.585 156.088 1 41.91 ? N3 ATP 501 D 1 
HETATM 31 C C4 ATP . . . HA 28 163.765 176.418 157.312 1 37.34 ? C4 ATP 501 D 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    206 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           31 
#