data_9E8J # _model_server_result.job_id f3J0WGnstYaQItq8rBPSAA _model_server_result.datetime_utc '2024-12-20 19:52:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9e8j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"MA","auth_seq_id":502}' # _entry.id 9E8J # _exptl.entry_id 9E8J _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 24.305 _entity.id 30 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 28-meric _pdbx_struct_assembly.oligomeric_count 28 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 30 DA N N ? 30 FA N N ? 30 HA N N ? 30 JA N N ? 30 MA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 G SG CYS 115 G CYS 115 1_555 G SG CYS 154 G CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 H SG CYS 137 H CYS 137 1_555 H SG CYS 213 H CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 M SG CYS 42 M CYS 41 1_555 M SG CYS 187 M CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 N SG CYS 633 U CYS 633 1_555 N SG CYS 659 U CYS 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A OG1 THR 223 A THR 223 1_555 DA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.729 ? metalc ? metalc2 A OD2 ASP 275 A ASP 275 1_555 DA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc3 CA O1B ATP . A ATP 501 1_555 DA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc4 B OG1 THR 233 B THR 233 1_555 FA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc5 B OD2 ASP 285 B ASP 285 1_555 FA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc6 EA O2G ATP . B ATP 501 1_555 FA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc7 EA O2B ATP . B ATP 501 1_555 FA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc8 C OD1 ASP 249 C ASP 249 1_555 HA MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc9 C OD2 ASP 249 C ASP 249 1_555 HA MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? metalc ? metalc10 GA O1G ATP . C ATP 501 1_555 HA MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? metalc ? metalc11 GA O2G ATP . C ATP 501 1_555 HA MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc12 D OG1 THR 213 D THR 213 1_555 JA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? metalc ? metalc13 D OD2 ASP 265 D ASP 265 1_555 JA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? metalc ? metalc14 IA O2B ADP . D ADP 501 1_555 JA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? metalc ? metalc15 IA O3A ADP . D ADP 501 1_555 JA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc16 F OG1 THR 234 F THR 234 1_555 MA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc17 LA O3G ATP . F ATP 501 1_555 MA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc18 V NE2 HIS 113 c HIS 113 1_555 NA ZN ZN . u ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc19 V NE2 HIS 115 c HIS 115 1_555 NA ZN ZN . u ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc20 V OD1 ASP 126 c ASP 126 1_555 NA ZN ZN . u ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc21 V OD2 ASP 126 c ASP 126 1_555 NA ZN ZN . u ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.778 ? metalc ? metalc22 AA ND1 HIS 289 u HIS 289 1_555 NA ZN ZN . u ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc23 AA NE2 HIS 289 u HIS 289 1_555 NA ZN ZN . u ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9E8J _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code CA 29 ATP A 1 501 501 ATP ATP . DA 30 MG A 1 502 502 MG MG . EA 29 ATP B 1 501 501 ATP ATP . FA 30 MG B 1 502 502 MG MG . GA 29 ATP C 1 501 501 ATP ATP . HA 30 MG C 1 502 502 MG MG . IA 31 ADP D 1 501 501 ADP ADP . JA 30 MG D 1 502 502 MG MG . KA 31 ADP E 1 501 501 ADP ADP . LA 29 ATP F 1 501 501 ATP ATP . MA 30 MG F 1 502 502 MG MG . NA 32 ZN u 1 301 311 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id MA _atom_site.label_entity_id 30 _atom_site.Cartn_x 218.539 _atom_site.Cartn_y 171.61 _atom_site.Cartn_z 167.08 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 69.92 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 502 _atom_site.auth_asym_id F _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 117 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 28 _model_server_stats.element_count 1 #