data_9E8K
#
_model_server_result.job_id            7H6OkmPgGoAmctgX6gmLDQ 
_model_server_result.datetime_utc      '2024-12-28 01:39:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9e8k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CA","auth_seq_id":501}' 
#
_entry.id    9E8K 
#
_exptl.entry_id    9E8K 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          29 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    27-meric 
_pdbx_struct_assembly.oligomeric_count      27 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 29 CA N N 
? 29 EA N N 
? 29 FA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 115 G CYS 115 1_555 C SG CYS 154 G CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 H SG CYS 42 M CYS 41 1_555 H SG CYS 187 M CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf3 AA SG CYS 633 U CYS 633 1_555 AA SG CYS 659 U CYS 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc1 B OG1 THR 197 C THR 197 1_555 DA MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? 
metalc ? metalc2 CA O3G ATP . C ATP 501 1_555 DA MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
metalc ? metalc3 CA O2B ATP . C ATP 501 1_555 DA MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? 
metalc ? metalc4 W NE2 HIS 115 c HIS 115 1_555 IA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? 
metalc ? metalc5 W OD1 ASP 126 c ASP 126 1_555 IA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.707 ? 
metalc ? metalc6 W OD2 ASP 126 c ASP 126 1_555 IA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.717 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     9E8K 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
BA 28 ADP A 1 501 501 ADP ADP . 
CA 29 ATP C 1 501 501 ATP ATP . 
DA 30 MG C 1 502 502 MG MG . 
EA 29 ATP D 1 501 501 ATP ATP . 
FA 29 ATP E 1 501 501 ATP ATP . 
GA 28 ADP F 1 501 501 ADP ADP . 
HA 28 ADP B 1 501 501 ADP ADP . 
IA 31 ZN c 1 501 400 ZN ZN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . CA 29 172.386 162.399 194.516 1 126.34 ? PG ATP 501 C 1 
HETATM 2 O O1G ATP . . . CA 29 171.512 163.621 194.482 1 126.34 ? O1G ATP 501 C 1 
HETATM 3 O O2G ATP . . . CA 29 172.185 161.496 193.333 1 126.34 -1 O2G ATP 501 C 1 
HETATM 4 O O3G ATP . . . CA 29 173.83 162.723 194.781 1 126.34 ? O3G ATP 501 C 1 
HETATM 5 P PB ATP . . . CA 29 171.409 162.198 197.161 1 126.34 ? PB ATP 501 C 1 
HETATM 6 O O1B ATP . . . CA 29 171.213 161.117 198.164 1 126.34 -1 O1B ATP 501 C 1 
HETATM 7 O O2B ATP . . . CA 29 172.28 163.364 197.474 1 126.34 ? O2B ATP 501 C 1 
HETATM 8 O O3B ATP . . . CA 29 171.884 161.567 195.778 1 126.34 ? O3B ATP 501 C 1 
HETATM 9 P PA ATP . . . CA 29 168.873 163.312 197.73 1 126.34 ? PA ATP 501 C 1 
HETATM 10 O O1A ATP . . . CA 29 168.314 162.165 198.498 1 126.34 -1 O1A ATP 501 C 1 
HETATM 11 O O2A ATP . . . CA 29 169.464 164.452 198.485 1 126.34 ? O2A ATP 501 C 1 
HETATM 12 O O3A ATP . . . CA 29 169.981 162.755 196.733 1 126.34 ? O3A ATP 501 C 1 
HETATM 13 O O5' ATP . . . CA 29 167.785 163.855 196.694 1 126.34 ? O5' ATP 501 C 1 
HETATM 14 C C5' ATP . . . CA 29 166.875 162.894 196.114 1 126.34 ? C5' ATP 501 C 1 
HETATM 15 C C4' ATP . . . CA 29 165.61 162.87 196.933 1 126.34 ? C4' ATP 501 C 1 
HETATM 16 O O4' ATP . . . CA 29 165.741 161.908 198.01 1 126.34 ? O4' ATP 501 C 1 
HETATM 17 C C3' ATP . . . CA 29 165.23 164.199 197.605 1 126.34 ? C3' ATP 501 C 1 
HETATM 18 O O3' ATP . . . CA 29 163.905 164.574 197.259 1 126.34 ? O3' ATP 501 C 1 
HETATM 19 C C2' ATP . . . CA 29 165.329 163.891 199.102 1 126.34 ? C2' ATP 501 C 1 
HETATM 20 O O2' ATP . . . CA 29 164.403 164.608 199.887 1 126.34 ? O2' ATP 501 C 1 
HETATM 21 C C1' ATP . . . CA 29 165.022 162.403 199.108 1 126.34 ? C1' ATP 501 C 1 
HETATM 22 N N9 ATP . . . CA 29 165.485 161.755 200.314 1 126.34 ? N9 ATP 501 C 1 
HETATM 23 C C8 ATP . . . CA 29 166.7 161.169 200.554 1 126.34 ? C8 ATP 501 C 1 
HETATM 24 N N7 ATP . . . CA 29 166.8 160.694 201.774 1 126.34 ? N7 ATP 501 C 1 
HETATM 25 C C5 ATP . . . CA 29 165.585 161.006 202.371 1 126.34 ? C5 ATP 501 C 1 
HETATM 26 C C6 ATP . . . CA 29 165.069 160.781 203.659 1 126.34 ? C6 ATP 501 C 1 
HETATM 27 N N6 ATP . . . CA 29 165.741 160.167 204.628 1 126.34 ? N6 ATP 501 C 1 
HETATM 28 N N1 ATP . . . CA 29 163.82 161.234 203.916 1 126.34 ? N1 ATP 501 C 1 
HETATM 29 C C2 ATP . . . CA 29 163.149 161.855 202.938 1 126.34 ? C2 ATP 501 C 1 
HETATM 30 N N3 ATP . . . CA 29 163.531 162.12 201.693 1 126.34 ? N3 ATP 501 C 1 
HETATM 31 C C4 ATP . . . CA 29 164.772 161.663 201.476 1 126.34 ? C4 ATP 501 C 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    113 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#