data_9E8N # _model_server_result.job_id Ab5asrvnVPuTmsMms5PBeg _model_server_result.datetime_utc '2024-12-27 08:53:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9e8n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JA","auth_seq_id":501}' # _entry.id 9E8N # _exptl.entry_id 9E8N _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 31 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 31 HA N N ? 31 JA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 115 G CYS 115 1_555 D SG CYS 154 G CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 I SG CYS 42 M CYS 41 1_555 I SG CYS 187 M CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 AA SG CYS 633 U CYS 633 1_555 AA SG CYS 659 U CYS 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc1 V OG1 THR 181 E THR 181 1_555 IA MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc2 V OD1 ASP 233 E ASP 233 1_555 IA MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc3 V OD2 ASP 233 E ASP 233 1_555 IA MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc4 HA O3G ATP . E ATP 501 1_555 IA MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? metalc ? metalc5 W OG1 THR 234 F THR 234 1_555 KA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc6 W OD2 ASP 286 F ASP 286 1_555 KA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc7 JA O2G ATP . F ATP 501 1_555 KA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? metalc ? metalc8 JA O3G ATP . F ATP 501 1_555 KA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc9 X NE2 HIS 113 c HIS 113 1_555 LA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc10 X NE2 HIS 115 c HIS 115 1_555 LA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? metalc ? metalc11 X OD1 ASP 126 c ASP 126 1_555 LA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.712 ? metalc ? metalc12 X OD2 ASP 126 c ASP 126 1_555 LA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.726 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 9E8N _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 ADP A 1 501 501 ADP ADP . EA 30 ADP C 1 501 501 ADP ADP . FA 30 ADP D 1 501 501 ADP ADP . GA 30 ADP B 1 501 501 ADP ADP . HA 31 ATP E 1 501 501 ATP ATP . IA 32 MG E 1 502 502 MG MG . JA 31 ATP F 1 501 501 ATP ATP . KA 32 MG F 1 502 502 MG MG . LA 33 ZN c 1 501 401 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . JA 31 215.572 146.445 157.84 1 51.16 ? PG ATP 501 F 1 HETATM 2 O O1G ATP . . . JA 31 215.805 146.126 159.251 1 51.16 ? O1G ATP 501 F 1 HETATM 3 O O2G ATP . . . JA 31 214.159 146.362 157.456 1 51.16 ? O2G ATP 501 F 1 HETATM 4 O O3G ATP . . . JA 31 216.129 147.799 157.676 1 51.16 ? O3G ATP 501 F 1 HETATM 5 P PB ATP . . . JA 31 216.606 145.537 155.551 1 51.16 ? PB ATP 501 F 1 HETATM 6 O O1B ATP . . . JA 31 216.123 144.257 154.994 1 51.16 ? O1B ATP 501 F 1 HETATM 7 O O2B ATP . . . JA 31 215.871 146.7 155.009 1 51.16 ? O2B ATP 501 F 1 HETATM 8 O O3B ATP . . . JA 31 216.451 145.463 157.079 1 51.16 ? O3B ATP 501 F 1 HETATM 9 P PA ATP . . . JA 31 218.792 146.925 154.967 1 51.16 ? PA ATP 501 F 1 HETATM 10 O O1A ATP . . . JA 31 218.205 147.267 153.662 1 51.16 ? O1A ATP 501 F 1 HETATM 11 O O2A ATP . . . JA 31 218.559 148.073 155.863 1 51.16 ? O2A ATP 501 F 1 HETATM 12 O O3A ATP . . . JA 31 218.138 145.721 155.653 1 51.16 ? O3A ATP 501 F 1 HETATM 13 O O5' ATP . . . JA 31 220.32 146.538 154.897 1 51.16 ? O5' ATP 501 F 1 HETATM 14 C C5' ATP . . . JA 31 221.069 146.697 156.084 1 51.16 ? C5' ATP 501 F 1 HETATM 15 C C4' ATP . . . JA 31 222.532 146.36 155.777 1 51.16 ? C4' ATP 501 F 1 HETATM 16 O O4' ATP . . . JA 31 222.573 145.03 155.228 1 51.16 ? O4' ATP 501 F 1 HETATM 17 C C3' ATP . . . JA 31 223.124 147.288 154.707 1 51.16 ? C3' ATP 501 F 1 HETATM 18 O O3' ATP . . . JA 31 224.457 147.642 155.046 1 51.16 ? O3' ATP 501 F 1 HETATM 19 C C2' ATP . . . JA 31 223.16 146.422 153.473 1 51.16 ? C2' ATP 501 F 1 HETATM 20 O O2' ATP . . . JA 31 224.238 146.766 152.604 1 51.16 ? O2' ATP 501 F 1 HETATM 21 C C1' ATP . . . JA 31 223.321 145.019 154.021 1 51.16 ? C1' ATP 501 F 1 HETATM 22 N N9 ATP . . . JA 31 222.773 144.033 153.136 1 51.16 ? N9 ATP 501 F 1 HETATM 23 C C8 ATP . . . JA 31 221.581 143.333 153.284 1 51.16 ? C8 ATP 501 F 1 HETATM 24 N N7 ATP . . . JA 31 221.188 142.733 152.149 1 51.16 ? N7 ATP 501 F 1 HETATM 25 C C5 ATP . . . JA 31 222.162 143.126 151.29 1 51.16 ? C5 ATP 501 F 1 HETATM 26 C C6 ATP . . . JA 31 222.28 142.854 149.95 1 51.16 ? C6 ATP 501 F 1 HETATM 27 N N6 ATP . . . JA 31 221.403 142.076 149.303 1 51.16 ? N6 ATP 501 F 1 HETATM 28 N N1 ATP . . . JA 31 223.273 143.314 149.224 1 51.16 ? N1 ATP 501 F 1 HETATM 29 C C2 ATP . . . JA 31 224.175 144.059 149.87 1 51.16 ? C2 ATP 501 F 1 HETATM 30 N N3 ATP . . . JA 31 224.165 144.373 151.174 1 51.16 ? N3 ATP 501 F 1 HETATM 31 C C4 ATP . . . JA 31 223.119 143.886 151.848 1 51.16 ? C4 ATP 501 F 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 89 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #