data_9E8O # _model_server_result.job_id PXlUn3W8V30BYl9xqjtiNg _model_server_result.datetime_utc '2024-12-20 14:05:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9e8o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"KA","auth_seq_id":501}' # _entry.id 9E8O # _exptl.entry_id 9E8O _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 35 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9E8O _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9E8O _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 34-meric _pdbx_struct_assembly.oligomeric_count 34 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 35 IA N N ? 35 KA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 DA SG CYS 396 F CYS 396 1_555 DA SG CYS 400 F CYS 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf2 FA SG CYS 633 U CYS 633 1_555 FA SG CYS 659 U CYS 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 GA C PHE 226 g PHE 226 1_555 GA N1 CR8 227 g CR8 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 GA C3 CR8 227 g CR8 228 1_555 GA N ASN 228 g ASN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? metalc ? metalc1 A OG1 THR 233 B THR 233 1_555 JA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc2 IA O1G ATP . B ATP 501 1_555 JA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc3 IA O2G ATP . B ATP 501 1_555 JA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc4 IA O1B ATP . B ATP 501 1_555 JA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc5 IA O3B ATP . B ATP 501 1_555 JA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? metalc ? metalc6 B OG1 THR 197 C THR 197 1_555 LA MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc7 KA O1G ATP . C ATP 501 1_555 LA MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? metalc ? metalc8 KA O2G ATP . C ATP 501 1_555 LA MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? metalc ? metalc9 C OG1 THR 213 D THR 213 1_555 NA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc10 MA O2B ADP . D ADP 501 1_555 NA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc11 D NE2 HIS 113 c HIS 113 1_555 OA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc12 D NE2 HIS 115 c HIS 115 1_555 OA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc13 D OD1 ASP 126 c ASP 126 1_555 OA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc14 D OD2 ASP 126 c ASP 126 1_555 OA ZN ZN . c ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 9E8O _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code IA 35 ATP B 1 501 501 ATP ATP . JA 36 MG B 1 502 502 MG MG . KA 35 ATP C 1 501 501 ATP ATP . LA 36 MG C 1 502 502 MG MG . MA 37 ADP D 1 501 501 ADP ADP . NA 36 MG D 1 502 502 MG MG . OA 38 ZN c 1 501 401 ZN ZN . PA 37 ADP A 1 501 501 ADP ADP . QA 37 ADP F 1 501 501 ADP ADP . RA 37 ADP E 1 501 501 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . KA 35 170.024 179.609 198.077 1 106.58 ? PG ATP 501 C 1 HETATM 2 O O1G ATP . . . KA 35 169.765 180.209 196.742 1 104.3 ? O1G ATP 501 C 1 HETATM 3 O O2G ATP . . . KA 35 170.978 180.433 198.941 1 92.42 ? O2G ATP 501 C 1 HETATM 4 O O3G ATP . . . KA 35 170.519 178.163 198.01 1 92.71 ? O3G ATP 501 C 1 HETATM 5 P PB ATP . . . KA 35 168.152 179.844 200.374 1 90.24 ? PB ATP 501 C 1 HETATM 6 O O1B ATP . . . KA 35 167.88 178.617 201.138 1 93.68 ? O1B ATP 501 C 1 HETATM 7 O O2B ATP . . . KA 35 169.144 180.811 201.001 1 89.73 ? O2B ATP 501 C 1 HETATM 8 O O3B ATP . . . KA 35 168.678 179.534 198.924 1 89.44 ? O3B ATP 501 C 1 HETATM 9 P PA ATP . . . KA 35 166.488 182.122 199.569 1 92.68 ? PA ATP 501 C 1 HETATM 10 O O1A ATP . . . KA 35 166.051 182.982 200.684 1 92.23 ? O1A ATP 501 C 1 HETATM 11 O O2A ATP . . . KA 35 167.699 182.612 198.787 1 95.92 ? O2A ATP 501 C 1 HETATM 12 O O3A ATP . . . KA 35 166.832 180.675 200.073 1 76.34 ? O3A ATP 501 C 1 HETATM 13 O O5' ATP . . . KA 35 165.301 181.883 198.56 1 90.5 ? O5' ATP 501 C 1 HETATM 14 C C5' ATP . . . KA 35 164.124 181.152 198.954 1 87.15 ? C5' ATP 501 C 1 HETATM 15 C C4' ATP . . . KA 35 162.896 181.962 198.633 1 79.35 ? C4' ATP 501 C 1 HETATM 16 O O4' ATP . . . KA 35 161.741 181.309 199.187 1 75.2 ? O4' ATP 501 C 1 HETATM 17 C C3' ATP . . . KA 35 162.878 183.371 199.209 1 76.98 ? C3' ATP 501 C 1 HETATM 18 O O3' ATP . . . KA 35 162.138 184.261 198.383 1 84.06 ? O3' ATP 501 C 1 HETATM 19 C C2' ATP . . . KA 35 162.23 183.178 200.582 1 75.66 ? C2' ATP 501 C 1 HETATM 20 O O2' ATP . . . KA 35 161.397 184.28 200.914 1 84.69 ? O2' ATP 501 C 1 HETATM 21 C C1' ATP . . . KA 35 161.357 181.933 200.395 1 72.08 ? C1' ATP 501 C 1 HETATM 22 N N9 ATP . . . KA 35 161.502 180.957 201.462 1 68.54 ? N9 ATP 501 C 1 HETATM 23 C C8 ATP . . . KA 35 162.251 179.811 201.428 1 77.69 ? C8 ATP 501 C 1 HETATM 24 N N7 ATP . . . KA 35 162.209 179.11 202.534 1 82.75 ? N7 ATP 501 C 1 HETATM 25 C C5 ATP . . . KA 35 161.375 179.85 203.357 1 74.16 ? C5 ATP 501 C 1 HETATM 26 C C6 ATP . . . KA 35 160.92 179.649 204.672 1 82.15 ? C6 ATP 501 C 1 HETATM 27 N N6 ATP . . . KA 35 161.258 178.598 205.423 1 94.07 ? N6 ATP 501 C 1 HETATM 28 N N1 ATP . . . KA 35 160.096 180.577 205.197 1 83.11 ? N1 ATP 501 C 1 HETATM 29 C C2 ATP . . . KA 35 159.754 181.63 204.452 1 80.84 ? C2 ATP 501 C 1 HETATM 30 N N3 ATP . . . KA 35 160.117 181.924 203.204 1 67.89 ? N3 ATP 501 C 1 HETATM 31 C C4 ATP . . . KA 35 160.933 180.991 202.709 1 67.83 ? C4 ATP 501 C 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 1517 _model_server_stats.query_time_ms 1245 _model_server_stats.encode_time_ms 24 _model_server_stats.element_count 31 #