data_9E9H # _model_server_result.job_id XL0FZZLEWScAmic2JQrrEg _model_server_result.datetime_utc '2025-07-14 06:06:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9e9h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 9E9H # _exptl.entry_id 9E9H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 564.722 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S)-N,5-dimethyl-3-({4-[3-(morpholin-4-yl)phenyl]-6-(2-propanoyl-2,6-diazaspiro[3.4]octan-6-yl)-1,3,5-triazin-2-yl}amino)hexanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9E9H _cell.length_a 40.715 _cell.length_b 40.715 _cell.length_c 341.304 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9E9H _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 26 A CYS 12 1_555 D C16 A1BH6 . A A1BH6 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 sing metalc ? metalc1 A OG SER 31 A SER 17 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc2 B CA CA . A CA 301 1_555 C O2B GDP . A GDP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc3 B CA CA . A CA 301 1_555 E O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc4 B CA CA . A CA 301 1_555 E O HOH . A HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc5 B CA CA . A CA 301 1_555 E O HOH . A HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc6 B CA CA . A CA 301 1_555 E O HOH . A HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? # _chem_comp.formula 'C30 H44 N8 O3' _chem_comp.formula_weight 564.722 _chem_comp.id A1BH6 _chem_comp.mon_nstd_flag . _chem_comp.name (3S)-N,5-dimethyl-3-({4-[3-(morpholin-4-yl)phenyl]-6-(2-propanoyl-2,6-diazaspiro[3.4]octan-6-yl)-1,3,5-triazin-2-yl}amino)hexanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C14 A1BH6 doub 1 n n C15 C14 A1BH6 sing 2 n n C15 C16 A1BH6 sing 3 n n C14 N5 A1BH6 sing 4 n n N5 C17 A1BH6 sing 5 n n N5 C13 A1BH6 sing 6 n n C17 C12 A1BH6 sing 7 n n C13 C12 A1BH6 sing 8 n n C18 C12 A1BH6 sing 9 n n C18 C19 A1BH6 sing 10 n n C12 C11 A1BH6 sing 11 n n C19 N4 A1BH6 sing 12 n n C1 C2 A1BH6 sing 13 n n C11 N4 A1BH6 sing 14 n n N4 C10 A1BH6 sing 15 n n C3 C2 A1BH6 sing 16 n n C2 C4 A1BH6 sing 17 n n O1 C7 A1BH6 doub 18 n n C8 N1 A1BH6 sing 19 n n C4 C5 A1BH6 sing 20 n n C10 N3 A1BH6 doub 21 n y C10 N6 A1BH6 sing 22 n y N3 C9 A1BH6 sing 23 n y C7 N1 A1BH6 sing 24 n n C7 C6 A1BH6 sing 25 n n C5 C6 A1BH6 sing 26 n n C5 N2 A1BH6 sing 27 n n N6 C20 A1BH6 doub 28 n y C9 N2 A1BH6 sing 29 n n C9 N8 A1BH6 doub 30 n y C20 N8 A1BH6 sing 31 n y C20 C21 A1BH6 sing 32 n n C22 C21 A1BH6 doub 33 n y C22 C23 A1BH6 sing 34 n y C21 C30 A1BH6 sing 35 n y C23 C24 A1BH6 doub 36 n y C30 C25 A1BH6 doub 37 n y C24 C25 A1BH6 sing 38 n y C25 N7 A1BH6 sing 39 n n N7 C29 A1BH6 sing 40 n n N7 C26 A1BH6 sing 41 n n C29 C28 A1BH6 sing 42 n n C26 C27 A1BH6 sing 43 n n C28 O3 A1BH6 sing 44 n n C27 O3 A1BH6 sing 45 n n C26 H1 A1BH6 sing 46 n n C26 H2 A1BH6 sing 47 n n C27 H3 A1BH6 sing 48 n n C27 H4 A1BH6 sing 49 n n C28 H5 A1BH6 sing 50 n n C28 H6 A1BH6 sing 51 n n C29 H7 A1BH6 sing 52 n n C29 H8 A1BH6 sing 53 n n C30 H9 A1BH6 sing 54 n n C24 H10 A1BH6 sing 55 n n C23 H11 A1BH6 sing 56 n n C22 H12 A1BH6 sing 57 n n N2 H13 A1BH6 sing 58 n n C5 H14 A1BH6 sing 59 n n C4 H15 A1BH6 sing 60 n n C4 H16 A1BH6 sing 61 n n C2 H17 A1BH6 sing 62 n n C3 H18 A1BH6 sing 63 n n C3 H19 A1BH6 sing 64 n n C3 H20 A1BH6 sing 65 n n C1 H21 A1BH6 sing 66 n n C1 H22 A1BH6 sing 67 n n C1 H23 A1BH6 sing 68 n n C6 H24 A1BH6 sing 69 n n C6 H25 A1BH6 sing 70 n n N1 H26 A1BH6 sing 71 n n C8 H27 A1BH6 sing 72 n n C8 H28 A1BH6 sing 73 n n C8 H29 A1BH6 sing 74 n n C11 H30 A1BH6 sing 75 n n C11 H31 A1BH6 sing 76 n n C19 H32 A1BH6 sing 77 n n C19 H33 A1BH6 sing 78 n n C18 H34 A1BH6 sing 79 n n C18 H35 A1BH6 sing 80 n n C17 H36 A1BH6 sing 81 n n C17 H37 A1BH6 sing 82 n n C13 H38 A1BH6 sing 83 n n C13 H39 A1BH6 sing 84 n n C15 H40 A1BH6 sing 85 n n C15 H41 A1BH6 sing 86 n n C16 H44 A1BH6 sing 87 n n C16 H43 A1BH6 sing 88 n n C16 H42 A1BH6 sing 89 n n # _atom_sites.entry_id 9E9H _atom_sites.fract_transf_matrix[1][1] 0.024561 _atom_sites.fract_transf_matrix[1][2] 0.01418 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028361 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00293 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 301 CA CA . C 3 GDP A 1 302 501 GDP GDP . D 4 A1BH6 A 1 303 701 A1BH6 UNL . E 5 HOH A 1 401 23 HOH HOH . E 5 HOH A 2 402 16 HOH HOH . E 5 HOH A 3 403 62 HOH HOH . E 5 HOH A 4 404 45 HOH HOH . E 5 HOH A 5 405 44 HOH HOH . E 5 HOH A 6 406 82 HOH HOH . E 5 HOH A 7 407 17 HOH HOH . E 5 HOH A 8 408 403 HOH HOH . E 5 HOH A 9 409 12 HOH HOH . E 5 HOH A 10 410 70 HOH HOH . E 5 HOH A 11 411 88 HOH HOH . E 5 HOH A 12 412 30 HOH HOH . E 5 HOH A 13 413 1 HOH HOH . E 5 HOH A 14 414 25 HOH HOH . E 5 HOH A 15 415 74 HOH HOH . E 5 HOH A 16 416 28 HOH HOH . E 5 HOH A 17 417 40 HOH HOH . E 5 HOH A 18 418 404 HOH HOH . E 5 HOH A 19 419 401 HOH HOH . E 5 HOH A 20 420 63 HOH HOH . E 5 HOH A 21 421 10 HOH HOH . E 5 HOH A 22 422 24 HOH HOH . E 5 HOH A 23 423 35 HOH HOH . E 5 HOH A 24 424 27 HOH HOH . E 5 HOH A 25 425 9 HOH HOH . E 5 HOH A 26 426 8 HOH HOH . E 5 HOH A 27 427 402 HOH HOH . E 5 HOH A 28 428 26 HOH HOH . E 5 HOH A 29 429 13 HOH HOH . E 5 HOH A 30 430 75 HOH HOH . E 5 HOH A 31 431 55 HOH HOH . E 5 HOH A 32 432 18 HOH HOH . E 5 HOH A 33 433 76 HOH HOH . E 5 HOH A 34 434 51 HOH HOH . E 5 HOH A 35 435 14 HOH HOH . E 5 HOH A 36 436 31 HOH HOH . E 5 HOH A 37 437 15 HOH HOH . E 5 HOH A 38 438 6 HOH HOH . E 5 HOH A 39 439 21 HOH HOH . E 5 HOH A 40 440 38 HOH HOH . E 5 HOH A 41 441 65 HOH HOH . E 5 HOH A 42 442 61 HOH HOH . E 5 HOH A 43 443 48 HOH HOH . E 5 HOH A 44 444 37 HOH HOH . E 5 HOH A 45 445 66 HOH HOH . E 5 HOH A 46 446 83 HOH HOH . E 5 HOH A 47 447 2 HOH HOH . E 5 HOH A 48 448 77 HOH HOH . E 5 HOH A 49 449 57 HOH HOH . E 5 HOH A 50 450 20 HOH HOH . E 5 HOH A 51 451 78 HOH HOH . E 5 HOH A 52 452 32 HOH HOH . E 5 HOH A 53 453 5 HOH HOH . E 5 HOH A 54 454 39 HOH HOH . E 5 HOH A 55 455 3 HOH HOH . E 5 HOH A 56 456 42 HOH HOH . E 5 HOH A 57 457 43 HOH HOH . E 5 HOH A 58 458 50 HOH HOH . E 5 HOH A 59 459 19 HOH HOH . E 5 HOH A 60 460 41 HOH HOH . E 5 HOH A 61 461 33 HOH HOH . E 5 HOH A 62 462 52 HOH HOH . E 5 HOH A 63 463 7 HOH HOH . E 5 HOH A 64 464 64 HOH HOH . E 5 HOH A 65 465 53 HOH HOH . E 5 HOH A 66 466 68 HOH HOH . E 5 HOH A 67 467 29 HOH HOH . E 5 HOH A 68 468 4 HOH HOH . E 5 HOH A 69 469 56 HOH HOH . E 5 HOH A 70 470 47 HOH HOH . E 5 HOH A 71 471 46 HOH HOH . E 5 HOH A 72 472 22 HOH HOH . E 5 HOH A 73 473 73 HOH HOH . E 5 HOH A 74 474 87 HOH HOH . E 5 HOH A 75 475 86 HOH HOH . E 5 HOH A 76 476 72 HOH HOH . E 5 HOH A 77 477 81 HOH HOH . E 5 HOH A 78 478 11 HOH HOH . E 5 HOH A 79 479 71 HOH HOH . E 5 HOH A 80 480 36 HOH HOH . E 5 HOH A 81 481 84 HOH HOH . E 5 HOH A 82 482 80 HOH HOH . E 5 HOH A 83 483 49 HOH HOH . E 5 HOH A 84 484 79 HOH HOH . E 5 HOH A 85 485 89 HOH HOH . E 5 HOH A 86 486 69 HOH HOH . E 5 HOH A 87 487 34 HOH HOH . E 5 HOH A 88 488 58 HOH HOH . E 5 HOH A 89 489 85 HOH HOH . E 5 HOH A 90 490 54 HOH HOH . E 5 HOH A 91 491 67 HOH HOH . E 5 HOH A 92 492 60 HOH HOH . E 5 HOH A 93 493 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C26 A1BH6 . . . D 4 -7.838 -14.751 30.427 1 33.81 ? C26 A1BH6 303 A 1 HETATM 2 C C27 A1BH6 . . . D 4 -8.005 -15.206 31.881 1 35.06 ? C27 A1BH6 303 A 1 HETATM 3 O O3 A1BH6 . . . D 4 -7.243 -16.401 32.146 1 35.18 ? O3 A1BH6 303 A 1 HETATM 4 C C28 A1BH6 . . . D 4 -7.662 -17.462 31.262 1 34.49 ? C28 A1BH6 303 A 1 HETATM 5 C C29 A1BH6 . . . D 4 -7.424 -17.035 29.809 1 33.31 ? C29 A1BH6 303 A 1 HETATM 6 N N7 A1BH6 . . . D 4 -8.268 -15.849 29.535 1 31.54 ? N7 A1BH6 303 A 1 HETATM 7 C C25 A1BH6 . . . D 4 -8.403 -15.517 28.23 1 30.26 ? C25 A1BH6 303 A 1 HETATM 8 C C30 A1BH6 . . . D 4 -7.866 -16.273 27.189 1 29.63 ? C30 A1BH6 303 A 1 HETATM 9 C C24 A1BH6 . . . D 4 -9.169 -14.406 27.896 1 30.6 ? C24 A1BH6 303 A 1 HETATM 10 C C23 A1BH6 . . . D 4 -9.355 -14.051 26.562 1 31 ? C23 A1BH6 303 A 1 HETATM 11 C C22 A1BH6 . . . D 4 -8.8 -14.822 25.547 1 30.41 ? C22 A1BH6 303 A 1 HETATM 12 C C21 A1BH6 . . . D 4 -8.038 -15.952 25.845 1 28.54 ? C21 A1BH6 303 A 1 HETATM 13 C C20 A1BH6 . . . D 4 -7.484 -16.73 24.817 1 27.75 ? C20 A1BH6 303 A 1 HETATM 14 N N6 A1BH6 . . . D 4 -8.166 -16.986 23.692 1 27.46 ? N6 A1BH6 303 A 1 HETATM 15 N N8 A1BH6 . . . D 4 -6.256 -17.26 24.95 1 27.02 ? N8 A1BH6 303 A 1 HETATM 16 C C9 A1BH6 . . . D 4 -5.725 -18.014 23.973 1 28.87 ? C9 A1BH6 303 A 1 HETATM 17 N N2 A1BH6 . . . D 4 -4.515 -18.522 24.149 1 29.2 ? N2 A1BH6 303 A 1 HETATM 18 C C5 A1BH6 . . . D 4 -3.79 -19.309 23.15 1 31.88 ? C5 A1BH6 303 A 1 HETATM 19 C C4 A1BH6 . . . D 4 -2.623 -18.478 22.605 1 33.56 ? C4 A1BH6 303 A 1 HETATM 20 C C2 A1BH6 . . . D 4 -3.083 -17.149 21.978 1 34.64 ? C2 A1BH6 303 A 1 HETATM 21 C C3 A1BH6 . . . D 4 -1.876 -16.235 21.724 1 35.99 ? C3 A1BH6 303 A 1 HETATM 22 C C1 A1BH6 . . . D 4 -3.887 -17.351 20.685 1 34.42 ? C1 A1BH6 303 A 1 HETATM 23 C C6 A1BH6 . . . D 4 -3.265 -20.567 23.868 1 32.99 ? C6 A1BH6 303 A 1 HETATM 24 C C7 A1BH6 . . . D 4 -2.65 -21.616 22.931 1 34.05 ? C7 A1BH6 303 A 1 HETATM 25 O O1 A1BH6 . . . D 4 -3.336 -22.189 22.087 1 34.51 ? O1 A1BH6 303 A 1 HETATM 26 N N1 A1BH6 . . . D 4 -1.368 -21.879 23.17 1 34.74 ? N1 A1BH6 303 A 1 HETATM 27 C C8 A1BH6 . . . D 4 -0.697 -22.883 22.337 1 35.17 ? C8 A1BH6 303 A 1 HETATM 28 N N3 A1BH6 . . . D 4 -6.418 -18.238 22.849 1 27.25 ? N3 A1BH6 303 A 1 HETATM 29 C C10 A1BH6 . . . D 4 -7.649 -17.724 22.707 1 27.87 ? C10 A1BH6 303 A 1 HETATM 30 N N4 A1BH6 . . . D 4 -8.316 -17.963 21.579 1 29.08 ? N4 A1BH6 303 A 1 HETATM 31 C C11 A1BH6 . . . D 4 -9.714 -17.55 21.315 1 29.72 ? C11 A1BH6 303 A 1 HETATM 32 C C19 A1BH6 . . . D 4 -7.72 -18.69 20.438 1 29.83 ? C19 A1BH6 303 A 1 HETATM 33 C C18 A1BH6 . . . D 4 -8.949 -19.34 19.806 1 29.66 ? C18 A1BH6 303 A 1 HETATM 34 C C12 A1BH6 . . . D 4 -9.999 -18.234 19.976 1 29.53 ? C12 A1BH6 303 A 1 HETATM 35 C C17 A1BH6 . . . D 4 -10.023 -17.278 18.782 1 29.77 ? C17 A1BH6 303 A 1 HETATM 36 C C13 A1BH6 . . . D 4 -11.439 -18.648 19.685 1 30.05 ? C13 A1BH6 303 A 1 HETATM 37 N N5 A1BH6 . . . D 4 -11.31 -17.903 18.416 1 29.81 ? N5 A1BH6 303 A 1 HETATM 38 C C14 A1BH6 . . . D 4 -12.067 -17.811 17.344 1 29.18 ? C14 A1BH6 303 A 1 HETATM 39 O O2 A1BH6 . . . D 4 -11.769 -17.097 16.392 1 28.99 ? O2 A1BH6 303 A 1 HETATM 40 C C15 A1BH6 . . . D 4 -13.367 -18.614 17.309 1 30.15 ? C15 A1BH6 303 A 1 HETATM 41 C C16 A1BH6 . . . D 4 -14.705 -17.875 17.358 1 32.17 ? C16 A1BH6 303 A 1 # _model_server_stats.io_time_ms 85 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #