data_9E9I # _model_server_result.job_id Le6tKfHVH7UdJRLeDq80vA _model_server_result.datetime_utc '2025-02-28 13:37:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9e9i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 9E9I # _exptl.entry_id 9E9I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.38 _cell.angle_gamma 90 _cell.entry_id 9E9I _cell.length_a 45.386 _cell.length_b 39.854 _cell.length_c 52.718 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9E9I _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 27 A CYS 12 1_555 D C30 A1BH5 . A A1BH5 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? metalc ? metalc1 A OG SER 32 A SER 17 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc2 B MG MG . A MG 301 1_555 C O2B GDP . A GDP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc3 B MG MG . A MG 301 1_555 H O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc4 B MG MG . A MG 301 1_555 H O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc5 B MG MG . A MG 301 1_555 H O HOH . A HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc6 B MG MG . A MG 301 1_555 H O HOH . A HOH 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 160 n n C1 C2 EDO sing 161 n n C1 H11 EDO sing 162 n n C1 H12 EDO sing 163 n n O1 HO1 EDO sing 164 n n C2 O2 EDO sing 165 n n C2 H21 EDO sing 166 n n C2 H22 EDO sing 167 n n O2 HO2 EDO sing 168 n n # _atom_sites.entry_id 9E9I _atom_sites.fract_transf_matrix[1][1] 0.022033 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004035 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025092 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019284 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 301 301 MG MG . C 3 GDP A 1 302 501 GDP GDP . D 4 A1BH5 A 1 303 701 A1BH5 UNL . E 5 EDO A 1 304 1 EDO EDO . F 5 EDO A 1 305 2 EDO EDO . G 5 EDO A 1 306 3 EDO EDO . H 6 HOH A 1 401 145 HOH HOH . H 6 HOH A 2 402 161 HOH HOH . H 6 HOH A 3 403 29 HOH HOH . H 6 HOH A 4 404 141 HOH HOH . H 6 HOH A 5 405 50 HOH HOH . H 6 HOH A 6 406 19 HOH HOH . H 6 HOH A 7 407 403 HOH HOH . H 6 HOH A 8 408 96 HOH HOH . H 6 HOH A 9 409 39 HOH HOH . H 6 HOH A 10 410 401 HOH HOH . H 6 HOH A 11 411 76 HOH HOH . H 6 HOH A 12 412 14 HOH HOH . H 6 HOH A 13 413 57 HOH HOH . H 6 HOH A 14 414 172 HOH HOH . H 6 HOH A 15 415 6 HOH HOH . H 6 HOH A 16 416 36 HOH HOH . H 6 HOH A 17 417 69 HOH HOH . H 6 HOH A 18 418 48 HOH HOH . H 6 HOH A 19 419 110 HOH HOH . H 6 HOH A 20 420 34 HOH HOH . H 6 HOH A 21 421 150 HOH HOH . H 6 HOH A 22 422 77 HOH HOH . H 6 HOH A 23 423 174 HOH HOH . H 6 HOH A 24 424 27 HOH HOH . H 6 HOH A 25 425 47 HOH HOH . H 6 HOH A 26 426 59 HOH HOH . H 6 HOH A 27 427 24 HOH HOH . H 6 HOH A 28 428 109 HOH HOH . H 6 HOH A 29 429 1 HOH HOH . H 6 HOH A 30 430 147 HOH HOH . H 6 HOH A 31 431 404 HOH HOH . H 6 HOH A 32 432 68 HOH HOH . H 6 HOH A 33 433 9 HOH HOH . H 6 HOH A 34 434 75 HOH HOH . H 6 HOH A 35 435 108 HOH HOH . H 6 HOH A 36 436 56 HOH HOH . H 6 HOH A 37 437 17 HOH HOH . H 6 HOH A 38 438 16 HOH HOH . H 6 HOH A 39 439 178 HOH HOH . H 6 HOH A 40 440 28 HOH HOH . H 6 HOH A 41 441 25 HOH HOH . H 6 HOH A 42 442 4 HOH HOH . H 6 HOH A 43 443 97 HOH HOH . H 6 HOH A 44 444 93 HOH HOH . H 6 HOH A 45 445 61 HOH HOH . H 6 HOH A 46 446 177 HOH HOH . H 6 HOH A 47 447 51 HOH HOH . H 6 HOH A 48 448 131 HOH HOH . H 6 HOH A 49 449 55 HOH HOH . H 6 HOH A 50 450 121 HOH HOH . H 6 HOH A 51 451 103 HOH HOH . H 6 HOH A 52 452 148 HOH HOH . H 6 HOH A 53 453 3 HOH HOH . H 6 HOH A 54 454 22 HOH HOH . H 6 HOH A 55 455 166 HOH HOH . H 6 HOH A 56 456 2 HOH HOH . H 6 HOH A 57 457 63 HOH HOH . H 6 HOH A 58 458 135 HOH HOH . H 6 HOH A 59 459 149 HOH HOH . H 6 HOH A 60 460 104 HOH HOH . H 6 HOH A 61 461 20 HOH HOH . H 6 HOH A 62 462 156 HOH HOH . H 6 HOH A 63 463 5 HOH HOH . H 6 HOH A 64 464 8 HOH HOH . H 6 HOH A 65 465 106 HOH HOH . H 6 HOH A 66 466 116 HOH HOH . H 6 HOH A 67 467 91 HOH HOH . H 6 HOH A 68 468 120 HOH HOH . H 6 HOH A 69 469 62 HOH HOH . H 6 HOH A 70 470 40 HOH HOH . H 6 HOH A 71 471 83 HOH HOH . H 6 HOH A 72 472 173 HOH HOH . H 6 HOH A 73 473 175 HOH HOH . H 6 HOH A 74 474 33 HOH HOH . H 6 HOH A 75 475 100 HOH HOH . H 6 HOH A 76 476 158 HOH HOH . H 6 HOH A 77 477 144 HOH HOH . H 6 HOH A 78 478 41 HOH HOH . H 6 HOH A 79 479 90 HOH HOH . H 6 HOH A 80 480 13 HOH HOH . H 6 HOH A 81 481 119 HOH HOH . H 6 HOH A 82 482 23 HOH HOH . H 6 HOH A 83 483 72 HOH HOH . H 6 HOH A 84 484 80 HOH HOH . H 6 HOH A 85 485 128 HOH HOH . H 6 HOH A 86 486 118 HOH HOH . H 6 HOH A 87 487 10 HOH HOH . H 6 HOH A 88 488 151 HOH HOH . H 6 HOH A 89 489 52 HOH HOH . H 6 HOH A 90 490 170 HOH HOH . H 6 HOH A 91 491 402 HOH HOH . H 6 HOH A 92 492 74 HOH HOH . H 6 HOH A 93 493 66 HOH HOH . H 6 HOH A 94 494 171 HOH HOH . H 6 HOH A 95 495 58 HOH HOH . H 6 HOH A 96 496 94 HOH HOH . H 6 HOH A 97 497 127 HOH HOH . H 6 HOH A 98 498 73 HOH HOH . H 6 HOH A 99 499 111 HOH HOH . H 6 HOH A 100 500 92 HOH HOH . H 6 HOH A 101 501 126 HOH HOH . H 6 HOH A 102 502 107 HOH HOH . H 6 HOH A 103 503 78 HOH HOH . H 6 HOH A 104 504 176 HOH HOH . H 6 HOH A 105 505 18 HOH HOH . H 6 HOH A 106 506 153 HOH HOH . H 6 HOH A 107 507 115 HOH HOH . H 6 HOH A 108 508 164 HOH HOH . H 6 HOH A 109 509 157 HOH HOH . H 6 HOH A 110 510 87 HOH HOH . H 6 HOH A 111 511 64 HOH HOH . H 6 HOH A 112 512 12 HOH HOH . H 6 HOH A 113 513 95 HOH HOH . H 6 HOH A 114 514 81 HOH HOH . H 6 HOH A 115 515 26 HOH HOH . H 6 HOH A 116 516 54 HOH HOH . H 6 HOH A 117 517 30 HOH HOH . H 6 HOH A 118 518 45 HOH HOH . H 6 HOH A 119 519 155 HOH HOH . H 6 HOH A 120 520 143 HOH HOH . H 6 HOH A 121 521 21 HOH HOH . H 6 HOH A 122 522 49 HOH HOH . H 6 HOH A 123 523 15 HOH HOH . H 6 HOH A 124 524 11 HOH HOH . H 6 HOH A 125 525 152 HOH HOH . H 6 HOH A 126 526 146 HOH HOH . H 6 HOH A 127 527 129 HOH HOH . H 6 HOH A 128 528 101 HOH HOH . H 6 HOH A 129 529 122 HOH HOH . H 6 HOH A 130 530 71 HOH HOH . H 6 HOH A 131 531 88 HOH HOH . H 6 HOH A 132 532 46 HOH HOH . H 6 HOH A 133 533 31 HOH HOH . H 6 HOH A 134 534 70 HOH HOH . H 6 HOH A 135 535 159 HOH HOH . H 6 HOH A 136 536 60 HOH HOH . H 6 HOH A 137 537 123 HOH HOH . H 6 HOH A 138 538 38 HOH HOH . H 6 HOH A 139 539 117 HOH HOH . H 6 HOH A 140 540 43 HOH HOH . H 6 HOH A 141 541 37 HOH HOH . H 6 HOH A 142 542 160 HOH HOH . H 6 HOH A 143 543 84 HOH HOH . H 6 HOH A 144 544 105 HOH HOH . H 6 HOH A 145 545 99 HOH HOH . H 6 HOH A 146 546 7 HOH HOH . H 6 HOH A 147 547 85 HOH HOH . H 6 HOH A 148 548 162 HOH HOH . H 6 HOH A 149 549 113 HOH HOH . H 6 HOH A 150 550 137 HOH HOH . H 6 HOH A 151 551 67 HOH HOH . H 6 HOH A 152 552 42 HOH HOH . H 6 HOH A 153 553 154 HOH HOH . H 6 HOH A 154 554 114 HOH HOH . H 6 HOH A 155 555 140 HOH HOH . H 6 HOH A 156 556 165 HOH HOH . H 6 HOH A 157 557 53 HOH HOH . H 6 HOH A 158 558 102 HOH HOH . H 6 HOH A 159 559 134 HOH HOH . H 6 HOH A 160 560 142 HOH HOH . H 6 HOH A 161 561 79 HOH HOH . H 6 HOH A 162 562 44 HOH HOH . H 6 HOH A 163 563 139 HOH HOH . H 6 HOH A 164 564 132 HOH HOH . H 6 HOH A 165 565 133 HOH HOH . H 6 HOH A 166 566 98 HOH HOH . H 6 HOH A 167 567 138 HOH HOH . H 6 HOH A 168 568 86 HOH HOH . H 6 HOH A 169 569 112 HOH HOH . H 6 HOH A 170 570 35 HOH HOH . H 6 HOH A 171 571 124 HOH HOH . H 6 HOH A 172 572 32 HOH HOH . H 6 HOH A 173 573 89 HOH HOH . H 6 HOH A 174 574 167 HOH HOH . H 6 HOH A 175 575 82 HOH HOH . H 6 HOH A 176 576 163 HOH HOH . H 6 HOH A 177 577 168 HOH HOH . H 6 HOH A 178 578 136 HOH HOH . H 6 HOH A 179 579 130 HOH HOH . H 6 HOH A 180 580 169 HOH HOH . H 6 HOH A 181 581 125 HOH HOH . H 6 HOH A 182 582 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 5 -5.11 -1.133 -8.996 1 22.58 ? C1 EDO 304 A 1 HETATM 2 O O1 EDO . . . E 5 -5.183 0.125 -8.347 1 22.5 ? O1 EDO 304 A 1 HETATM 3 C C2 EDO . . . E 5 -4.82 -1.032 -10.445 1 22.92 ? C2 EDO 304 A 1 HETATM 4 O O2 EDO . . . E 5 -3.477 -0.673 -10.709 1 23.33 ? O2 EDO 304 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #