data_9EB3
#
_model_server_result.job_id            KR3Oy9eofTndDSvk7ZUyUQ 
_model_server_result.datetime_utc      '2025-07-27 21:09:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9eb3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":301}' 
#
_entry.id    9EB3 
#
_exptl.entry_id    9EB3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.5 
_cell.angle_gamma         90 
_cell.entry_id            9EB3 
_cell.length_a            52.94 
_cell.length_b            54.94 
_cell.length_c            136.244 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9EB3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 98 A CYS 98 1_555 A SG CYS 161 A CYS 161 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 199 A CYS 199 1_555 A SG CYS 255 A CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 B SG CYS 24 B CYS 25 1_555 B SG CYS 79 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 179 n n 
C1 C2 GOL sing 180 n n 
C1 H11 GOL sing 181 n n 
C1 H12 GOL sing 182 n n 
O1 HO1 GOL sing 183 n n 
C2 O2 GOL sing 184 n n 
C2 C3 GOL sing 185 n n 
C2 H2 GOL sing 186 n n 
O2 HO2 GOL sing 187 n n 
C3 O3 GOL sing 188 n n 
C3 H31 GOL sing 189 n n 
C3 H32 GOL sing 190 n n 
O3 HO3 GOL sing 191 n n 
#
_atom_sites.entry_id                     9EB3 
_atom_sites.fract_transf_matrix[1][1]    0.018889 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002824 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018202 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007421 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 BJU A 1 301 1 BJU YK1 . 
D 4 GOL A 1 302 303 GOL GOL . 
E 4 GOL A 1 303 304 GOL GOL . 
F 4 GOL A 1 304 305 GOL GOL . 
G 5 SO4 A 1 305 4 SO4 SO4 . 
H 5 SO4 A 1 306 6 SO4 SO4 . 
I 5 SO4 A 1 307 7 SO4 SO4 . 
J 6 CL A 1 308 1 CL CL . 
K 4 GOL B 1 301 301 GOL GOL . 
L 7 HOH A 1 401 139 HOH HOH . 
L 7 HOH A 2 402 62 HOH HOH . 
L 7 HOH A 3 403 6 HOH HOH . 
L 7 HOH A 4 404 39 HOH HOH . 
L 7 HOH A 5 405 9 HOH HOH . 
L 7 HOH A 6 406 20 HOH HOH . 
L 7 HOH A 7 407 105 HOH HOH . 
L 7 HOH A 8 408 21 HOH HOH . 
L 7 HOH A 9 409 44 HOH HOH . 
L 7 HOH A 10 410 188 HOH HOH . 
L 7 HOH A 11 411 113 HOH HOH . 
L 7 HOH A 12 412 11 HOH HOH . 
L 7 HOH A 13 413 2 HOH HOH . 
L 7 HOH A 14 414 126 HOH HOH . 
L 7 HOH A 15 415 95 HOH HOH . 
L 7 HOH A 16 416 170 HOH HOH . 
L 7 HOH A 17 417 157 HOH HOH . 
L 7 HOH A 18 418 43 HOH HOH . 
L 7 HOH A 19 419 3 HOH HOH . 
L 7 HOH A 20 420 216 HOH HOH . 
L 7 HOH A 21 421 137 HOH HOH . 
L 7 HOH A 22 422 156 HOH HOH . 
L 7 HOH A 23 423 174 HOH HOH . 
L 7 HOH A 24 424 88 HOH HOH . 
L 7 HOH A 25 425 18 HOH HOH . 
L 7 HOH A 26 426 123 HOH HOH . 
L 7 HOH A 27 427 58 HOH HOH . 
L 7 HOH A 28 428 145 HOH HOH . 
L 7 HOH A 29 429 8 HOH HOH . 
L 7 HOH A 30 430 135 HOH HOH . 
L 7 HOH A 31 431 56 HOH HOH . 
L 7 HOH A 32 432 12 HOH HOH . 
L 7 HOH A 33 433 13 HOH HOH . 
L 7 HOH A 34 434 80 HOH HOH . 
L 7 HOH A 35 435 202 HOH HOH . 
L 7 HOH A 36 436 47 HOH HOH . 
L 7 HOH A 37 437 152 HOH HOH . 
L 7 HOH A 38 438 116 HOH HOH . 
L 7 HOH A 39 439 122 HOH HOH . 
L 7 HOH A 40 440 165 HOH HOH . 
L 7 HOH A 41 441 55 HOH HOH . 
L 7 HOH A 42 442 203 HOH HOH . 
L 7 HOH A 43 443 27 HOH HOH . 
L 7 HOH A 44 444 200 HOH HOH . 
L 7 HOH A 45 445 63 HOH HOH . 
L 7 HOH A 46 446 52 HOH HOH . 
L 7 HOH A 47 447 31 HOH HOH . 
L 7 HOH A 48 448 54 HOH HOH . 
L 7 HOH A 49 449 73 HOH HOH . 
L 7 HOH A 50 450 76 HOH HOH . 
L 7 HOH A 51 451 177 HOH HOH . 
L 7 HOH A 52 452 15 HOH HOH . 
L 7 HOH A 53 453 5 HOH HOH . 
L 7 HOH A 54 454 16 HOH HOH . 
L 7 HOH A 55 455 36 HOH HOH . 
L 7 HOH A 56 456 65 HOH HOH . 
L 7 HOH A 57 457 159 HOH HOH . 
L 7 HOH A 58 458 49 HOH HOH . 
L 7 HOH A 59 459 7 HOH HOH . 
L 7 HOH A 60 460 194 HOH HOH . 
L 7 HOH A 61 461 197 HOH HOH . 
L 7 HOH A 62 462 4 HOH HOH . 
L 7 HOH A 63 463 172 HOH HOH . 
L 7 HOH A 64 464 119 HOH HOH . 
L 7 HOH A 65 465 33 HOH HOH . 
L 7 HOH A 66 466 41 HOH HOH . 
L 7 HOH A 67 467 48 HOH HOH . 
L 7 HOH A 68 468 193 HOH HOH . 
L 7 HOH A 69 469 22 HOH HOH . 
L 7 HOH A 70 470 53 HOH HOH . 
L 7 HOH A 71 471 50 HOH HOH . 
L 7 HOH A 72 472 192 HOH HOH . 
L 7 HOH A 73 473 67 HOH HOH . 
L 7 HOH A 74 474 219 HOH HOH . 
L 7 HOH A 75 475 24 HOH HOH . 
L 7 HOH A 76 476 66 HOH HOH . 
L 7 HOH A 77 477 127 HOH HOH . 
L 7 HOH A 78 478 160 HOH HOH . 
L 7 HOH A 79 479 175 HOH HOH . 
L 7 HOH A 80 480 143 HOH HOH . 
L 7 HOH A 81 481 204 HOH HOH . 
L 7 HOH A 82 482 102 HOH HOH . 
L 7 HOH A 83 483 211 HOH HOH . 
L 7 HOH A 84 484 106 HOH HOH . 
L 7 HOH A 85 485 42 HOH HOH . 
L 7 HOH A 86 486 90 HOH HOH . 
L 7 HOH A 87 487 148 HOH HOH . 
L 7 HOH A 88 488 81 HOH HOH . 
L 7 HOH A 89 489 60 HOH HOH . 
L 7 HOH A 90 490 59 HOH HOH . 
L 7 HOH A 91 491 117 HOH HOH . 
L 7 HOH A 92 492 64 HOH HOH . 
L 7 HOH A 93 493 40 HOH HOH . 
L 7 HOH A 94 494 37 HOH HOH . 
L 7 HOH A 95 495 97 HOH HOH . 
L 7 HOH A 96 496 70 HOH HOH . 
L 7 HOH A 97 497 130 HOH HOH . 
L 7 HOH A 98 498 147 HOH HOH . 
L 7 HOH A 99 499 158 HOH HOH . 
L 7 HOH A 100 500 124 HOH HOH . 
L 7 HOH A 101 501 222 HOH HOH . 
L 7 HOH A 102 502 138 HOH HOH . 
L 7 HOH A 103 503 140 HOH HOH . 
L 7 HOH A 104 504 151 HOH HOH . 
L 7 HOH A 105 505 179 HOH HOH . 
L 7 HOH A 106 506 109 HOH HOH . 
L 7 HOH A 107 507 34 HOH HOH . 
L 7 HOH A 108 508 199 HOH HOH . 
L 7 HOH A 109 509 173 HOH HOH . 
L 7 HOH A 110 510 104 HOH HOH . 
L 7 HOH A 111 511 75 HOH HOH . 
L 7 HOH A 112 512 96 HOH HOH . 
L 7 HOH A 113 513 128 HOH HOH . 
L 7 HOH A 114 514 209 HOH HOH . 
L 7 HOH A 115 515 107 HOH HOH . 
L 7 HOH A 116 516 155 HOH HOH . 
L 7 HOH A 117 517 57 HOH HOH . 
L 7 HOH A 118 518 110 HOH HOH . 
L 7 HOH A 119 519 210 HOH HOH . 
L 7 HOH A 120 520 178 HOH HOH . 
L 7 HOH A 121 521 111 HOH HOH . 
L 7 HOH A 122 522 167 HOH HOH . 
L 7 HOH A 123 523 191 HOH HOH . 
L 7 HOH A 124 524 166 HOH HOH . 
L 7 HOH A 125 525 221 HOH HOH . 
L 7 HOH A 126 526 180 HOH HOH . 
L 7 HOH A 127 527 169 HOH HOH . 
L 7 HOH A 128 528 100 HOH HOH . 
L 7 HOH A 129 529 74 HOH HOH . 
L 7 HOH A 130 530 84 HOH HOH . 
L 7 HOH A 131 531 14 HOH HOH . 
L 7 HOH A 132 532 215 HOH HOH . 
L 7 HOH A 133 533 99 HOH HOH . 
M 7 HOH B 1 401 136 HOH HOH . 
M 7 HOH B 2 402 38 HOH HOH . 
M 7 HOH B 3 403 207 HOH HOH . 
M 7 HOH B 4 404 185 HOH HOH . 
M 7 HOH B 5 405 77 HOH HOH . 
M 7 HOH B 6 406 30 HOH HOH . 
M 7 HOH B 7 407 218 HOH HOH . 
M 7 HOH B 8 408 168 HOH HOH . 
M 7 HOH B 9 409 115 HOH HOH . 
M 7 HOH B 10 410 184 HOH HOH . 
M 7 HOH B 11 411 93 HOH HOH . 
M 7 HOH B 12 412 78 HOH HOH . 
M 7 HOH B 13 413 32 HOH HOH . 
M 7 HOH B 14 414 87 HOH HOH . 
M 7 HOH B 15 415 25 HOH HOH . 
M 7 HOH B 16 416 187 HOH HOH . 
M 7 HOH B 17 417 94 HOH HOH . 
M 7 HOH B 18 418 220 HOH HOH . 
M 7 HOH B 19 419 71 HOH HOH . 
M 7 HOH B 20 420 162 HOH HOH . 
M 7 HOH B 21 421 114 HOH HOH . 
M 7 HOH B 22 422 46 HOH HOH . 
M 7 HOH B 23 423 1 HOH HOH . 
M 7 HOH B 24 424 19 HOH HOH . 
M 7 HOH B 25 425 154 HOH HOH . 
M 7 HOH B 26 426 201 HOH HOH . 
M 7 HOH B 27 427 26 HOH HOH . 
M 7 HOH B 28 428 176 HOH HOH . 
M 7 HOH B 29 429 101 HOH HOH . 
M 7 HOH B 30 430 72 HOH HOH . 
M 7 HOH B 31 431 23 HOH HOH . 
M 7 HOH B 32 432 164 HOH HOH . 
M 7 HOH B 33 433 69 HOH HOH . 
M 7 HOH B 34 434 92 HOH HOH . 
M 7 HOH B 35 435 129 HOH HOH . 
M 7 HOH B 36 436 29 HOH HOH . 
M 7 HOH B 37 437 118 HOH HOH . 
M 7 HOH B 38 438 182 HOH HOH . 
M 7 HOH B 39 439 35 HOH HOH . 
M 7 HOH B 40 440 133 HOH HOH . 
M 7 HOH B 41 441 212 HOH HOH . 
M 7 HOH B 42 442 144 HOH HOH . 
M 7 HOH B 43 443 208 HOH HOH . 
M 7 HOH B 44 444 183 HOH HOH . 
M 7 HOH B 45 445 217 HOH HOH . 
M 7 HOH B 46 446 206 HOH HOH . 
M 7 HOH B 47 447 131 HOH HOH . 
M 7 HOH B 48 448 79 HOH HOH . 
M 7 HOH B 49 449 68 HOH HOH . 
M 7 HOH B 50 450 85 HOH HOH . 
M 7 HOH B 51 451 190 HOH HOH . 
M 7 HOH B 52 452 142 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 4 16.543 -12.916 22.76 1 49.29 ? C1 GOL 301 B 1 
HETATM 2 O O1 GOL . . . K 4 16.913 -12.158 23.883 1 40.91 ? O1 GOL 301 B 1 
HETATM 3 C C2 GOL . . . K 4 15.691 -14.075 23.29 1 56.56 ? C2 GOL 301 B 1 
HETATM 4 O O2 GOL . . . K 4 14.61 -13.643 24.053 1 48.95 ? O2 GOL 301 B 1 
HETATM 5 C C3 GOL . . . K 4 15.235 -14.875 22.032 1 53.3 ? C3 GOL 301 B 1 
HETATM 6 O O3 GOL . . . K 4 14.864 -13.981 20.987 1 46.36 ? O3 GOL 301 B 1 
HETATM 7 H H11 GOL . . . K 4 17.307 -13.269 22.277 1 59.12 ? H11 GOL 301 B 1 
HETATM 8 H H12 GOL . . . K 4 16.032 -12.405 22.113 1 59.12 ? H12 GOL 301 B 1 
HETATM 9 H HO1 GOL . . . K 4 16.358 -12.36 24.501 1 49.06 ? HO1 GOL 301 B 1 
HETATM 10 H H2 GOL . . . K 4 16.228 -14.629 23.878 1 67.85 ? H2 GOL 301 B 1 
HETATM 11 H HO2 GOL . . . K 4 14.274 -12.966 23.659 1 58.71 ? HO2 GOL 301 B 1 
HETATM 12 H H31 GOL . . . K 4 14.508 -15.46 22.299 1 63.94 ? H31 GOL 301 B 1 
HETATM 13 H H32 GOL . . . K 4 15.96 -15.467 21.777 1 63.94 ? H32 GOL 301 B 1 
HETATM 14 H HO3 GOL . . . K 4 14.038 -13.782 21.113 1 55.6 ? HO3 GOL 301 B 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           1146 
_model_server_stats.encode_time_ms          24 
_model_server_stats.element_count           14 
#