data_9EBS
#
_model_server_result.job_id            8Y50C2Q8gnx__j7MBdeaww 
_model_server_result.datetime_utc      '2025-03-12 20:30:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9ebs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":802}' 
#
_entry.id    9EBS 
#
_exptl.entry_id    9EBS 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              603.522 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-(4-cyclopropyl-6-methoxypyrimidin-5-yl)-9-({4-[1-methyl-4-(trifluoromethyl)-1H-imidazol-2-yl]phenyl}methyl)-7-(2,2,2-trifluoroethyl)-7,9-dihydro-8H-purin-8-imine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9EBS 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9EBS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C SG CYS 441 E CYS 440 1_555 E ZN ZN . E ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc2 C SG CYS 444 E CYS 443 1_555 E ZN ZN . E ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc3 C SG CYS 507 E CYS 506 1_555 E ZN ZN . E ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc4 C SG CYS 510 E CYS 509 1_555 E ZN ZN . E ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
#
_chem_comp.formula           'C27 H23 F6 N9 O' 
_chem_comp.formula_weight    603.522 
_chem_comp.id                A1BHF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-(4-cyclopropyl-6-methoxypyrimidin-5-yl)-9-({4-[1-methyl-4-(trifluoromethyl)-1H-imidazol-2-yl]phenyl}methyl)-7-(2,2,2-trifluoroethyl)-7,9-dihydro-8H-purin-8-imine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O02 C01 A1BHF sing 19 n n 
C03 O02 A1BHF sing 20 n n 
N04 C03 A1BHF doub 21 n y 
C05 N04 A1BHF sing 22 n y 
N06 C05 A1BHF doub 23 n y 
C07 N06 A1BHF sing 24 n y 
C09 C08 A1BHF sing 25 n n 
C10 C09 A1BHF sing 26 n n 
C08 C07 A1BHF sing 27 n n 
C11 C07 A1BHF doub 28 n y 
C12 C11 A1BHF sing 29 n n 
N13 C12 A1BHF doub 30 n y 
C14 N13 A1BHF sing 31 n y 
C15 C14 A1BHF doub 32 n y 
N16 C15 A1BHF sing 33 n n 
C18 C17 A1BHF sing 34 n n 
F19 C18 A1BHF sing 35 n n 
F20 C18 A1BHF sing 36 n n 
F21 C18 A1BHF sing 37 n n 
C17 N16 A1BHF sing 38 n n 
C22 N16 A1BHF sing 39 n n 
N23 C22 A1BHF doub 40 n n 
N24 C22 A1BHF sing 41 n n 
C26 C25 A1BHF sing 42 n n 
C27 C26 A1BHF doub 43 n y 
C28 C27 A1BHF sing 44 n y 
C29 C28 A1BHF doub 45 n y 
C31 C30 A1BHF doub 46 n y 
C30 C29 A1BHF sing 47 n y 
C32 C29 A1BHF sing 48 n n 
N33 C32 A1BHF doub 49 n y 
C34 N33 A1BHF sing 50 n y 
N36 C35 A1BHF sing 51 n y 
C37 N36 A1BHF sing 52 n n 
C35 C34 A1BHF doub 53 n y 
C38 C34 A1BHF sing 54 n n 
F39 C38 A1BHF sing 55 n n 
F40 C38 A1BHF sing 56 n n 
F41 C38 A1BHF sing 57 n n 
C25 N24 A1BHF sing 58 n n 
C42 N24 A1BHF sing 59 n n 
N43 C42 A1BHF doub 60 n y 
C03 C11 A1BHF sing 61 n y 
C08 C10 A1BHF sing 62 n n 
C12 N43 A1BHF sing 63 n y 
C15 C42 A1BHF sing 64 n y 
C26 C31 A1BHF sing 65 n y 
C32 N36 A1BHF sing 66 n y 
C10 H101 A1BHF sing 67 n n 
C10 H102 A1BHF sing 68 n n 
C17 H171 A1BHF sing 69 n n 
C17 H172 A1BHF sing 70 n n 
C28 H281 A1BHF sing 71 n n 
C01 H013 A1BHF sing 72 n n 
C01 H012 A1BHF sing 73 n n 
C01 H011 A1BHF sing 74 n n 
C05 H051 A1BHF sing 75 n n 
C08 H081 A1BHF sing 76 n n 
C09 H091 A1BHF sing 77 n n 
C09 H092 A1BHF sing 78 n n 
C14 H141 A1BHF sing 79 n n 
C25 H251 A1BHF sing 80 n n 
C25 H252 A1BHF sing 81 n n 
C27 H271 A1BHF sing 82 n n 
C30 H301 A1BHF sing 83 n n 
C31 H311 A1BHF sing 84 n n 
C35 H351 A1BHF sing 85 n n 
C37 H373 A1BHF sing 86 n n 
C37 H371 A1BHF sing 87 n n 
C37 H372 A1BHF sing 88 n n 
N23 H231 A1BHF sing 89 n n 
#
_atom_sites.entry_id                     9EBS 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 A1A4Y C 1 101 76 A1A4Y 776 . 
E 5 ZN E 1 801 802 ZN ZN . 
F 6 A1BHF E 1 802 803 A1BHF LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 A1BHF . . . F 6 126.519 140.261 169.7 1 74.02 ? C10 A1BHF 802 E 1 
HETATM 2 C C15 A1BHF . . . F 6 131.616 138.548 173.306 1 68 ? C15 A1BHF 802 E 1 
HETATM 3 C C17 A1BHF . . . F 6 133.872 139.058 174.332 1 73.42 ? C17 A1BHF 802 E 1 
HETATM 4 C C22 A1BHF . . . F 6 131.606 139.715 175.186 1 73.84 ? C22 A1BHF 802 E 1 
HETATM 5 C C26 A1BHF . . . F 6 128.954 141.565 175.129 1 66.75 ? C26 A1BHF 802 E 1 
HETATM 6 C C28 A1BHF . . . F 6 128.795 143.284 173.421 1 71.03 ? C28 A1BHF 802 E 1 
HETATM 7 C C01 A1BHF . . . F 6 128.981 133.597 170.983 1 71.58 ? C01 A1BHF 802 E 1 
HETATM 8 C C03 A1BHF . . . F 6 128.378 135.854 170.679 1 73.91 ? C03 A1BHF 802 E 1 
HETATM 9 C C05 A1BHF . . . F 6 126.53 136.264 169.362 1 74.89 ? C05 A1BHF 802 E 1 
HETATM 10 C C07 A1BHF . . . F 6 127.601 138.088 170.296 1 70.79 ? C07 A1BHF 802 E 1 
HETATM 11 C C08 A1BHF . . . F 6 127.671 139.611 170.478 1 71.66 ? C08 A1BHF 802 E 1 
HETATM 12 C C09 A1BHF . . . F 6 126.895 140.786 171.087 1 72.54 ? C09 A1BHF 802 E 1 
HETATM 13 C C11 A1BHF . . . F 6 128.523 137.223 170.898 1 71.96 ? C11 A1BHF 802 E 1 
HETATM 14 C C12 A1BHF . . . F 6 129.581 137.682 171.715 1 68.61 ? C12 A1BHF 802 E 1 
HETATM 15 C C14 A1BHF . . . F 6 131.876 137.797 172.112 1 70.49 ? C14 A1BHF 802 E 1 
HETATM 16 C C18 A1BHF . . . F 6 134.304 137.988 175.359 1 80.69 ? C18 A1BHF 802 E 1 
HETATM 17 C C25 A1BHF . . . F 6 129.132 140.057 175.517 1 70.24 ? C25 A1BHF 802 E 1 
HETATM 18 C C27 A1BHF . . . F 6 128.949 141.938 173.778 1 67.1 ? C27 A1BHF 802 E 1 
HETATM 19 C C29 A1BHF . . . F 6 128.65 144.26 174.417 1 74.26 ? C29 A1BHF 802 E 1 
HETATM 20 C C30 A1BHF . . . F 6 128.656 143.887 175.768 1 75.46 ? C30 A1BHF 802 E 1 
HETATM 21 C C31 A1BHF . . . F 6 128.811 142.538 176.125 1 72.86 ? C31 A1BHF 802 E 1 
HETATM 22 C C32 A1BHF . . . F 6 128.494 145.619 174.054 1 70.48 ? C32 A1BHF 802 E 1 
HETATM 23 C C34 A1BHF . . . F 6 127.602 147.463 173.356 1 70.15 ? C34 A1BHF 802 E 1 
HETATM 24 C C35 A1BHF . . . F 6 128.935 147.71 173.698 1 69.54 ? C35 A1BHF 802 E 1 
HETATM 25 C C37 A1BHF . . . F 6 130.832 146.348 174.58 1 76.21 ? C37 A1BHF 802 E 1 
HETATM 26 C C38 A1BHF . . . F 6 126.587 148.496 172.814 1 76.17 ? C38 A1BHF 802 E 1 
HETATM 27 C C42 A1BHF . . . F 6 130.318 138.822 173.634 1 69.13 ? C42 A1BHF 802 E 1 
HETATM 28 F F19 A1BHF . . . F 6 133.206 137.288 175.775 1 87.4 ? F19 A1BHF 802 E 1 
HETATM 29 F F20 A1BHF . . . F 6 135.193 137.124 174.783 1 77.93 ? F20 A1BHF 802 E 1 
HETATM 30 F F21 A1BHF . . . F 6 134.886 138.601 176.434 1 78.82 ? F21 A1BHF 802 E 1 
HETATM 31 F F39 A1BHF . . . F 6 126.491 148.366 171.456 1 77.07 ? F39 A1BHF 802 E 1 
HETATM 32 F F40 A1BHF . . . F 6 125.363 148.28 173.383 1 74.18 ? F40 A1BHF 802 E 1 
HETATM 33 F F41 A1BHF . . . F 6 127.015 149.759 173.115 1 77.63 ? F41 A1BHF 802 E 1 
HETATM 34 N N04 A1BHF . . . F 6 127.387 135.414 169.917 1 74.82 ? N04 A1BHF 802 E 1 
HETATM 35 N N06 A1BHF . . . F 6 126.634 137.572 169.549 1 70.25 ? N06 A1BHF 802 E 1 
HETATM 36 N N13 A1BHF . . . F 6 130.838 137.392 171.367 1 66.44 ? N13 A1BHF 802 E 1 
HETATM 37 N N16 A1BHF . . . F 6 132.406 139.11 174.278 1 70.49 ? N16 A1BHF 802 E 1 
HETATM 38 N N23 A1BHF . . . F 6 131.997 140.33 176.217 1 72.13 ? N23 A1BHF 802 E 1 
HETATM 39 N N24 A1BHF . . . F 6 130.327 139.544 174.806 1 73.51 ? N24 A1BHF 802 E 1 
HETATM 40 N N33 A1BHF . . . F 6 127.371 146.169 173.59 1 68.71 ? N33 A1BHF 802 E 1 
HETATM 41 N N36 A1BHF . . . F 6 129.446 146.554 174.12 1 68.36 ? N36 A1BHF 802 E 1 
HETATM 42 N N43 A1BHF . . . F 6 129.304 138.375 172.83 1 71.99 ? N43 A1BHF 802 E 1 
HETATM 43 O O02 A1BHF . . . F 6 129.274 134.949 171.258 1 75.69 ? O02 A1BHF 802 E 1 
#
_model_server_stats.io_time_ms              87 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#