data_9EEI # _model_server_result.job_id JafLl0TiuTy9r_JbaZN2Ww _model_server_result.datetime_utc '2025-06-24 13:19:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9eei # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 9EEI # _exptl.entry_id 9EEI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 405.488 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-[(benzyloxy)carbonyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.89 _cell.angle_gamma 90 _cell.entry_id 9EEI _cell.length_a 45.514 _cell.length_b 53.823 _cell.length_c 114.93 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9EEI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 45.514 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C21 _struct_conn.ptnr2_label_comp_id UED _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id UED _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.766 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H31 N3 O5' _chem_comp.formula_weight 405.488 _chem_comp.id UED _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-[(benzyloxy)carbonyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'GC373 bound form, GC376 bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C14 UED sing 356 n n C3 C2 UED doub 357 n y C3 C4 UED sing 358 n y C2 C1 UED sing 359 n y C14 C13 UED sing 360 n n C14 C15 UED sing 361 n n C13 C12 UED sing 362 n n C4 C5 UED doub 363 n y O8 C7 UED sing 364 n n O8 C9 UED sing 365 n n N11 C12 UED sing 366 n n N11 C9 UED sing 367 n n C1 C7 UED sing 368 n n C1 C6 UED doub 369 n y O18 C17 UED doub 370 n n C5 C6 UED sing 371 n y C12 C17 UED sing 372 n n C9 O10 UED doub 373 n n C17 N19 UED sing 374 n n C26 C27 UED sing 375 n n C26 C25 UED sing 376 n n N19 C20 UED sing 377 n n C20 C21 UED sing 378 n n C20 C24 UED sing 379 n n C27 N28 UED sing 380 n n O22 C21 UED sing 381 n n C25 C24 UED sing 382 n n C25 C29 UED sing 383 n n N28 C29 UED sing 384 n n C29 O30 UED doub 385 n n C7 H1 UED sing 386 n n C7 H2 UED sing 387 n n C2 H3 UED sing 388 n n C3 H4 UED sing 389 n n C4 H5 UED sing 390 n n C5 H6 UED sing 391 n n C6 H7 UED sing 392 n n N11 H8 UED sing 393 n n C12 H9 UED sing 394 n n C13 H10 UED sing 395 n n C13 H11 UED sing 396 n n C14 H12 UED sing 397 n n C15 H13 UED sing 398 n n C15 H14 UED sing 399 n n C15 H15 UED sing 400 n n C16 H16 UED sing 401 n n C16 H17 UED sing 402 n n C16 H18 UED sing 403 n n N19 H19 UED sing 404 n n C20 H20 UED sing 405 n n C24 H21 UED sing 406 n n C24 H22 UED sing 407 n n C25 H23 UED sing 408 n n C26 H24 UED sing 409 n n C26 H25 UED sing 410 n n C27 H26 UED sing 411 n n C27 H27 UED sing 412 n n N28 H28 UED sing 413 n n C21 H29 UED sing 414 n n C21 H30 UED sing 415 n n O22 H31 UED sing 416 n n # _atom_sites.entry_id 9EEI _atom_sites.fract_transf_matrix[1][1] 0.021971 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004227 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018579 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008861 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id UED _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id UED _pdbx_nonpoly_scheme.auth_mon_id K36 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 UED . A . B 2 44.478 -25.028 -14.493 0.49 70.08 ? C7 UED 401 A 1 HETATM 2 C C7 UED . B . B 2 42.634 -23.212 -14.193 0.51 65.4 ? C7 UED 401 A 1 HETATM 3 O O8 UED . . . B 2 43.118 -24.538 -14.5 1 70.46 ? O8 UED 401 A 1 HETATM 4 C C9 UED . . . B 2 42.163 -25.455 -14.741 1 75.52 ? C9 UED 401 A 1 HETATM 5 O O10 UED . . . B 2 41.02 -25.394 -14.349 1 81.55 ? O10 UED 401 A 1 HETATM 6 C C1 UED . A . B 2 44.851 -25.394 -13.059 0.49 69.76 ? C1 UED 401 A 1 HETATM 7 C C1 UED . B . B 2 42.906 -22.27 -15.36 0.51 64.35 ? C1 UED 401 A 1 HETATM 8 C C2 UED . A . B 2 44.088 -24.929 -11.998 0.49 69.59 ? C2 UED 401 A 1 HETATM 9 C C2 UED . B . B 2 43.174 -22.775 -16.62 0.51 59.9 ? C2 UED 401 A 1 HETATM 10 C C3 UED . A . B 2 44.436 -25.267 -10.7 0.49 70.33 ? C3 UED 401 A 1 HETATM 11 C C3 UED . B . B 2 43.419 -21.905 -17.671 0.51 61.67 ? C3 UED 401 A 1 HETATM 12 C C4 UED . A . B 2 45.541 -26.068 -10.466 0.49 65.53 ? C4 UED 401 A 1 HETATM 13 C C4 UED . B . B 2 43.39 -20.537 -17.457 0.51 62.29 ? C4 UED 401 A 1 HETATM 14 C C5 UED . A . B 2 46.3 -26.532 -11.528 0.49 63.08 ? C5 UED 401 A 1 HETATM 15 C C5 UED . B . B 2 43.119 -20.036 -16.196 0.51 57.05 ? C5 UED 401 A 1 HETATM 16 C C6 UED . A . B 2 45.954 -26.195 -12.824 0.49 67.78 ? C6 UED 401 A 1 HETATM 17 C C6 UED . B . B 2 42.875 -20.904 -15.146 0.51 63.29 ? C6 UED 401 A 1 HETATM 18 N N11 UED . . . B 2 42.623 -26.478 -15.473 1 65.96 ? N11 UED 401 A 1 HETATM 19 C C12 UED . . . B 2 41.945 -27.763 -15.446 1 67.08 ? C12 UED 401 A 1 HETATM 20 C C17 UED . . . B 2 41.867 -28.302 -14.011 1 73.52 ? C17 UED 401 A 1 HETATM 21 O O18 UED . . . B 2 42.878 -28.311 -13.308 1 75.48 ? O18 UED 401 A 1 HETATM 22 C C13 UED . . . B 2 42.677 -28.728 -16.38 1 59.42 ? C13 UED 401 A 1 HETATM 23 C C14 UED . . . B 2 42.519 -28.44 -17.875 1 64.57 ? C14 UED 401 A 1 HETATM 24 C C15 UED . . . B 2 41.04 -28.496 -18.253 1 76.19 ? C15 UED 401 A 1 HETATM 25 C C16 UED . . . B 2 43.28 -29.476 -18.704 1 81.65 ? C16 UED 401 A 1 HETATM 26 N N19 UED . . . B 2 40.703 -28.747 -13.526 1 75.13 ? N19 UED 401 A 1 HETATM 27 C C20 UED . . . B 2 40.591 -29.268 -12.173 1 69.24 ? C20 UED 401 A 1 HETATM 28 C C21 UED . . . B 2 40.23 -30.744 -12.268 1 76.21 ? C21 UED 401 A 1 HETATM 29 O O22 UED . . . B 2 40.493 -31.364 -11.045 1 75.41 ? O22 UED 401 A 1 HETATM 30 C C24 UED . . . B 2 39.568 -28.488 -11.348 1 72.35 ? C24 UED 401 A 1 HETATM 31 C C25 UED . . . B 2 40.087 -27.05 -11.191 1 75.43 ? C25 UED 401 A 1 HETATM 32 C C26 UED . . . B 2 41.302 -26.869 -10.27 1 72.51 ? C26 UED 401 A 1 HETATM 33 C C27 UED . . . B 2 41.023 -25.593 -9.483 1 61.27 ? C27 UED 401 A 1 HETATM 34 N N28 UED . . . B 2 39.601 -25.355 -9.687 1 77.75 ? N28 UED 401 A 1 HETATM 35 C C29 UED . . . B 2 39.026 -26.124 -10.614 1 78.96 ? C29 UED 401 A 1 HETATM 36 O O30 UED . . . B 2 37.842 -26.096 -10.957 1 74.91 ? O30 UED 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #