data_9EET # _model_server_result.job_id EaHbQcQlB9zqgXrC39xyPw _model_server_result.datetime_utc '2025-06-24 06:23:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9eet # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 9EET # _exptl.entry_id 9EET _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 405.488 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-[(benzyloxy)carbonyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.84 _cell.angle_gamma 90 _cell.entry_id 9EET _cell.length_a 45.097 _cell.length_b 53.533 _cell.length_c 113.68 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9EET _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y (x,y,-x+z)' _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 45.097 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C21 _struct_conn.ptnr2_label_comp_id UED _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id UED _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.767 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H31 N3 O5' _chem_comp.formula_weight 405.488 _chem_comp.id UED _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-[(benzyloxy)carbonyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'GC373 bound form, GC376 bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C14 UED sing 358 n n C3 C2 UED doub 359 n y C3 C4 UED sing 360 n y C2 C1 UED sing 361 n y C14 C13 UED sing 362 n n C14 C15 UED sing 363 n n C13 C12 UED sing 364 n n C4 C5 UED doub 365 n y O8 C7 UED sing 366 n n O8 C9 UED sing 367 n n N11 C12 UED sing 368 n n N11 C9 UED sing 369 n n C1 C7 UED sing 370 n n C1 C6 UED doub 371 n y O18 C17 UED doub 372 n n C5 C6 UED sing 373 n y C12 C17 UED sing 374 n n C9 O10 UED doub 375 n n C17 N19 UED sing 376 n n C26 C27 UED sing 377 n n C26 C25 UED sing 378 n n N19 C20 UED sing 379 n n C20 C21 UED sing 380 n n C20 C24 UED sing 381 n n C27 N28 UED sing 382 n n O22 C21 UED sing 383 n n C25 C24 UED sing 384 n n C25 C29 UED sing 385 n n N28 C29 UED sing 386 n n C29 O30 UED doub 387 n n C7 H1 UED sing 388 n n C7 H2 UED sing 389 n n C2 H3 UED sing 390 n n C3 H4 UED sing 391 n n C4 H5 UED sing 392 n n C5 H6 UED sing 393 n n C6 H7 UED sing 394 n n N11 H8 UED sing 395 n n C12 H9 UED sing 396 n n C13 H10 UED sing 397 n n C13 H11 UED sing 398 n n C14 H12 UED sing 399 n n C15 H13 UED sing 400 n n C15 H14 UED sing 401 n n C15 H15 UED sing 402 n n C16 H16 UED sing 403 n n C16 H17 UED sing 404 n n C16 H18 UED sing 405 n n N19 H19 UED sing 406 n n C20 H20 UED sing 407 n n C24 H21 UED sing 408 n n C24 H22 UED sing 409 n n C25 H23 UED sing 410 n n C26 H24 UED sing 411 n n C26 H25 UED sing 412 n n C27 H26 UED sing 413 n n C27 H27 UED sing 414 n n N28 H28 UED sing 415 n n C21 H29 UED sing 416 n n C21 H30 UED sing 417 n n O22 H31 UED sing 418 n n # _atom_sites.entry_id 9EET _atom_sites.fract_transf_matrix[1][1] 0.022174 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004246 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01868 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008956 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UED A 1 401 401 UED K36 . C 3 HOH A 1 501 501 HOH HOH . C 3 HOH A 2 502 502 HOH HOH . C 3 HOH A 3 503 503 HOH HOH . C 3 HOH A 4 504 504 HOH HOH . C 3 HOH A 5 505 505 HOH HOH . C 3 HOH A 6 506 506 HOH HOH . C 3 HOH A 7 507 507 HOH HOH . C 3 HOH A 8 508 508 HOH HOH . C 3 HOH A 9 509 509 HOH HOH . C 3 HOH A 10 510 510 HOH HOH . C 3 HOH A 11 511 511 HOH HOH . C 3 HOH A 12 512 512 HOH HOH . C 3 HOH A 13 513 513 HOH HOH . C 3 HOH A 14 514 514 HOH HOH . C 3 HOH A 15 515 515 HOH HOH . C 3 HOH A 16 516 516 HOH HOH . C 3 HOH A 17 517 517 HOH HOH . C 3 HOH A 18 518 518 HOH HOH . C 3 HOH A 19 519 519 HOH HOH . C 3 HOH A 20 520 520 HOH HOH . C 3 HOH A 21 521 521 HOH HOH . C 3 HOH A 22 522 522 HOH HOH . C 3 HOH A 23 523 523 HOH HOH . C 3 HOH A 24 524 524 HOH HOH . C 3 HOH A 25 525 525 HOH HOH . C 3 HOH A 26 526 526 HOH HOH . C 3 HOH A 27 527 527 HOH HOH . C 3 HOH A 28 528 528 HOH HOH . C 3 HOH A 29 529 529 HOH HOH . C 3 HOH A 30 530 530 HOH HOH . C 3 HOH A 31 531 531 HOH HOH . C 3 HOH A 32 532 532 HOH HOH . C 3 HOH A 33 533 533 HOH HOH . C 3 HOH A 34 534 534 HOH HOH . C 3 HOH A 35 535 535 HOH HOH . C 3 HOH A 36 536 536 HOH HOH . C 3 HOH A 37 537 537 HOH HOH . C 3 HOH A 38 538 538 HOH HOH . C 3 HOH A 39 539 539 HOH HOH . C 3 HOH A 40 540 540 HOH HOH . C 3 HOH A 41 541 541 HOH HOH . C 3 HOH A 42 542 542 HOH HOH . C 3 HOH A 43 543 543 HOH HOH . C 3 HOH A 44 544 544 HOH HOH . C 3 HOH A 45 545 545 HOH HOH . C 3 HOH A 46 546 546 HOH HOH . C 3 HOH A 47 547 547 HOH HOH . C 3 HOH A 48 548 548 HOH HOH . C 3 HOH A 49 549 549 HOH HOH . C 3 HOH A 50 550 550 HOH HOH . C 3 HOH A 51 551 551 HOH HOH . C 3 HOH A 52 552 552 HOH HOH . C 3 HOH A 53 553 553 HOH HOH . C 3 HOH A 54 554 554 HOH HOH . C 3 HOH A 55 555 555 HOH HOH . C 3 HOH A 56 556 556 HOH HOH . C 3 HOH A 57 557 557 HOH HOH . C 3 HOH A 58 558 558 HOH HOH . C 3 HOH A 59 559 559 HOH HOH . C 3 HOH A 60 560 560 HOH HOH . C 3 HOH A 61 561 561 HOH HOH . C 3 HOH A 62 562 562 HOH HOH . C 3 HOH A 63 563 563 HOH HOH . C 3 HOH A 64 564 564 HOH HOH . C 3 HOH A 65 565 565 HOH HOH . C 3 HOH A 66 566 566 HOH HOH . C 3 HOH A 67 567 567 HOH HOH . C 3 HOH A 68 568 568 HOH HOH . C 3 HOH A 69 569 569 HOH HOH . C 3 HOH A 70 570 570 HOH HOH . C 3 HOH A 71 571 571 HOH HOH . C 3 HOH A 72 572 572 HOH HOH . C 3 HOH A 73 573 573 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 UED . . . B 2 42.343 -22.054 -14.359 1 40.07 ? C7 UED 401 A 1 HETATM 2 O O8 UED . . . B 2 42.866 -23.279 -14.925 1 34.93 ? O8 UED 401 A 1 HETATM 3 C C9 UED . . . B 2 42.022 -24.33 -14.885 1 39.06 ? C9 UED 401 A 1 HETATM 4 O O10 UED . . . B 2 40.958 -24.349 -14.309 1 40.03 ? O10 UED 401 A 1 HETATM 5 C C1 UED . . . B 2 42.719 -20.869 -15.242 1 47.35 ? C1 UED 401 A 1 HETATM 6 C C2 UED . . . B 2 43.046 -21.07 -16.573 1 50.89 ? C2 UED 401 A 1 HETATM 7 C C3 UED . . . B 2 43.388 -19.988 -17.372 1 52.25 ? C3 UED 401 A 1 HETATM 8 C C4 UED . . . B 2 43.397 -18.708 -16.84 1 45.6 ? C4 UED 401 A 1 HETATM 9 C C5 UED . . . B 2 43.065 -18.509 -15.51 1 44.69 ? C5 UED 401 A 1 HETATM 10 C C6 UED . . . B 2 42.727 -19.589 -14.71 1 48.25 ? C6 UED 401 A 1 HETATM 11 N N11 UED . . . B 2 42.489 -25.39 -15.563 1 38.36 ? N11 UED 401 A 1 HETATM 12 C C12 UED . . . B 2 41.79 -26.661 -15.523 1 33.48 ? C12 UED 401 A 1 HETATM 13 C C17 UED . . . B 2 41.724 -27.18 -14.09 1 34.16 ? C17 UED 401 A 1 HETATM 14 O O18 UED . . . B 2 42.762 -27.407 -13.476 1 37.65 ? O18 UED 401 A 1 HETATM 15 C C13 UED . . . B 2 42.504 -27.674 -16.414 1 32.17 ? C13 UED 401 A 1 HETATM 16 C C14 UED . . . B 2 42.335 -27.276 -17.878 1 35.79 ? C14 UED 401 A 1 HETATM 17 C C15 UED . . . B 2 43.046 -28.292 -18.769 1 34.1 ? C15 UED 401 A 1 HETATM 18 C C16 UED . . . B 2 40.85 -27.215 -18.232 1 37.74 ? C16 UED 401 A 1 HETATM 19 N N19 UED . . . B 2 40.539 -27.382 -13.518 1 34.91 ? N19 UED 401 A 1 HETATM 20 C C20 UED . . . B 2 40.449 -27.884 -12.158 1 34.34 ? C20 UED 401 A 1 HETATM 21 C C21 UED . . . B 2 40.1 -29.37 -12.209 1 35.68 ? C21 UED 401 A 1 HETATM 22 O O22 UED . . . B 2 39.975 -29.876 -10.907 1 38.56 ? O22 UED 401 A 1 HETATM 23 C C24 UED . . . B 2 39.409 -27.083 -11.376 1 31.23 ? C24 UED 401 A 1 HETATM 24 C C25 UED . . . B 2 39.965 -25.687 -11.023 1 38.46 ? C25 UED 401 A 1 HETATM 25 C C26 UED . . . B 2 41.159 -25.632 -10.052 1 39.84 ? C26 UED 401 A 1 HETATM 26 C C27 UED . . . B 2 40.925 -24.394 -9.186 1 39 ? C27 UED 401 A 1 HETATM 27 N N28 UED . . . B 2 39.506 -24.109 -9.381 1 38.76 ? N28 UED 401 A 1 HETATM 28 C C29 UED . . . B 2 38.924 -24.785 -10.371 1 38.04 ? C29 UED 401 A 1 HETATM 29 O O30 UED . . . B 2 37.745 -24.695 -10.707 1 37.44 ? O30 UED 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #