data_9EF0 # _model_server_result.job_id bq8HdmiRwt92Ydnf_Mk00w _model_server_result.datetime_utc '2024-12-23 04:26:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ef0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 9EF0 # _exptl.entry_id 9EF0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9EF0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9EF0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 174 n n N1 C10 FMN doub 175 n n C2 O2 FMN doub 176 n n C2 N3 FMN sing 177 n n N3 C4 FMN sing 178 n n N3 HN3 FMN sing 179 n n C4 O4 FMN doub 180 n n C4 C4A FMN sing 181 n n C4A N5 FMN doub 182 n n C4A C10 FMN sing 183 n n N5 C5A FMN sing 184 n n C5A C6 FMN doub 185 n y C5A C9A FMN sing 186 n y C6 C7 FMN sing 187 n y C6 H6 FMN sing 188 n n C7 C7M FMN sing 189 n n C7 C8 FMN doub 190 n y C7M HM71 FMN sing 191 n n C7M HM72 FMN sing 192 n n C7M HM73 FMN sing 193 n n C8 C8M FMN sing 194 n n C8 C9 FMN sing 195 n y C8M HM81 FMN sing 196 n n C8M HM82 FMN sing 197 n n C8M HM83 FMN sing 198 n n C9 C9A FMN doub 199 n y C9 H9 FMN sing 200 n n C9A N10 FMN sing 201 n n N10 C10 FMN sing 202 n n N10 C1' FMN sing 203 n n C1' C2' FMN sing 204 n n C1' "H1'1" FMN sing 205 n n C1' "H1'2" FMN sing 206 n n C2' O2' FMN sing 207 n n C2' C3' FMN sing 208 n n C2' H2' FMN sing 209 n n O2' HO2' FMN sing 210 n n C3' O3' FMN sing 211 n n C3' C4' FMN sing 212 n n C3' H3' FMN sing 213 n n O3' HO3' FMN sing 214 n n C4' O4' FMN sing 215 n n C4' C5' FMN sing 216 n n C4' H4' FMN sing 217 n n O4' HO4' FMN sing 218 n n C5' O5' FMN sing 219 n n C5' "H5'1" FMN sing 220 n n C5' "H5'2" FMN sing 221 n n O5' P FMN sing 222 n n P O1P FMN doub 223 n n P O2P FMN sing 224 n n P O3P FMN sing 225 n n O2P HOP2 FMN sing 226 n n O3P HOP3 FMN sing 227 n n # _atom_sites.entry_id 9EF0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 701 751 FMN FMN . C 3 FAD A 1 702 752 FAD FAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 88.637 92.42 79.944 1 112.54 ? N1 FMN 701 A 1 HETATM 2 C C2 FMN . . . B 2 88.99 93.734 79.696 1 113.39 ? C2 FMN 701 A 1 HETATM 3 O O2 FMN . . . B 2 89.908 94.265 80.318 1 111.03 ? O2 FMN 701 A 1 HETATM 4 N N3 FMN . . . B 2 88.317 94.468 78.746 1 118.1 ? N3 FMN 701 A 1 HETATM 5 C C4 FMN . . . B 2 87.286 93.893 78.039 1 118.52 ? C4 FMN 701 A 1 HETATM 6 O O4 FMN . . . B 2 86.688 94.55 77.195 1 120.05 ? O4 FMN 701 A 1 HETATM 7 C C4A FMN . . . B 2 86.924 92.577 78.282 1 116.28 ? C4A FMN 701 A 1 HETATM 8 N N5 FMN . . . B 2 85.895 92.007 77.565 1 113.73 ? N5 FMN 701 A 1 HETATM 9 C C5A FMN . . . B 2 85.527 90.701 77.801 1 113.25 ? C5A FMN 701 A 1 HETATM 10 C C6 FMN . . . B 2 84.484 90.138 77.076 1 112.95 ? C6 FMN 701 A 1 HETATM 11 C C7 FMN . . . B 2 84.109 88.82 77.307 1 119.88 ? C7 FMN 701 A 1 HETATM 12 C C7M FMN . . . B 2 82.983 88.215 76.522 1 121.79 ? C7M FMN 701 A 1 HETATM 13 C C8 FMN . . . B 2 84.781 88.068 78.263 1 123.69 ? C8 FMN 701 A 1 HETATM 14 C C8M FMN . . . B 2 84.384 86.643 78.518 1 123 ? C8M FMN 701 A 1 HETATM 15 C C9 FMN . . . B 2 85.824 88.634 78.984 1 120.18 ? C9 FMN 701 A 1 HETATM 16 C C9A FMN . . . B 2 86.201 89.954 78.758 1 116.03 ? C9A FMN 701 A 1 HETATM 17 N N10 FMN . . . B 2 87.237 90.524 79.478 1 115.37 ? N10 FMN 701 A 1 HETATM 18 C C10 FMN . . . B 2 87.603 91.836 79.239 1 115.09 ? C10 FMN 701 A 1 HETATM 19 C C1' FMN . . . B 2 87.974 89.722 80.511 1 112.8 ? C1' FMN 701 A 1 HETATM 20 C C2' FMN . . . B 2 87.269 89.802 81.861 1 110.84 ? C2' FMN 701 A 1 HETATM 21 O O2' FMN . . . B 2 87.339 91.122 82.35 1 109.26 ? O2' FMN 701 A 1 HETATM 22 C C3' FMN . . . B 2 87.921 88.846 82.852 1 106.41 ? C3' FMN 701 A 1 HETATM 23 O O3' FMN . . . B 2 87.66 87.518 82.458 1 103.61 ? O3' FMN 701 A 1 HETATM 24 C C4' FMN . . . B 2 87.409 89.06 84.271 1 98.31 ? C4' FMN 701 A 1 HETATM 25 O O4' FMN . . . B 2 88.091 88.187 85.142 1 95.59 ? O4' FMN 701 A 1 HETATM 26 C C5' FMN . . . B 2 85.912 88.8 84.377 1 96.85 ? C5' FMN 701 A 1 HETATM 27 O O5' FMN . . . B 2 85.473 89.201 85.654 1 96.49 ? O5' FMN 701 A 1 HETATM 28 P P FMN . . . B 2 84.046 88.731 86.229 1 95.69 ? P FMN 701 A 1 HETATM 29 O O1P FMN . . . B 2 84.124 87.256 86.526 1 97.88 ? O1P FMN 701 A 1 HETATM 30 O O2P FMN . . . B 2 82.959 88.992 85.217 1 95.12 ? O2P FMN 701 A 1 HETATM 31 O O3P FMN . . . B 2 83.747 89.475 87.506 1 94.56 ? O3P FMN 701 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 390 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #