data_9EIV # _model_server_result.job_id RLHhyUNe2Vudrm-5XvrNOA _model_server_result.datetime_utc '2025-07-06 18:40:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9eiv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":704}' # _entry.id 9EIV # _exptl.entry_id 9EIV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.031 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-PHOSPHOGLYCOLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.48 _cell.angle_gamma 90 _cell.entry_id 9EIV _cell.length_a 44.711 _cell.length_b 119.789 _cell.length_c 60.074 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9EIV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 63 A GLU 63 1_555 D MN MN . A MN 703 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc2 A NZ LYS 244 A LYS 244 1_555 B MN MN . A MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc3 A NE2 HIS 264 A HIS 264 1_555 B MN MN . A MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc4 A OG1 THR 291 A THR 291 1_555 C MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc5 A OD1 ASP 311 A ASP 311 1_555 B MN MN . A MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc6 A NE2 HIS 502 A HIS 502 1_555 D MN MN . A MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc7 A OE1 GLU 607 A GLU 607 1_555 D MN MN . A MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc8 A OE2 GLU 607 A GLU 607 1_555 D MN MN . A MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc9 B MN MN . A MN 701 1_555 E O3P PGA . A PGA 704 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.545 ? metalc ? metalc10 B MN MN . A MN 701 1_555 E O1P PGA . A PGA 704 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.057 ? metalc ? metalc11 B MN MN . A MN 701 1_555 E O4P PGA . A PGA 704 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.538 ? metalc ? metalc12 B MN MN . A MN 701 1_555 G O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc13 B MN MN . A MN 701 1_555 G O HOH . A HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc14 B MN MN . A MN 701 1_555 G O HOH . A HOH 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc15 C MN MN . A MN 702 1_555 E O3P PGA . A PGA 704 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.36 ? metalc ? metalc16 C MN MN . A MN 702 1_555 F O3B GDP . A GDP 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc17 C MN MN . A MN 702 1_555 G O HOH . A HOH 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc18 C MN MN . A MN 702 1_555 G O HOH . A HOH 826 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? # _chem_comp.formula 'C2 H5 O6 P' _chem_comp.formula_weight 156.031 _chem_comp.id PGA _chem_comp.mon_nstd_flag . _chem_comp.name '2-PHOSPHOGLYCOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P PGA sing 282 n n P O2P PGA doub 283 n n P O3P PGA sing 284 n n P O4P PGA sing 285 n n O1P C2 PGA sing 286 n n O3P HOP3 PGA sing 287 n n O4P HOP4 PGA sing 288 n n C2 C1 PGA sing 289 n n C2 H21 PGA sing 290 n n C2 H22 PGA sing 291 n n C1 O1 PGA doub 292 n n C1 O2 PGA sing 293 n n O2 HO2 PGA sing 294 n n # _atom_sites.entry_id 9EIV _atom_sites.fract_transf_matrix[1][1] 0.022366 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008803 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008348 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017889 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 701 700 MN MN . C 2 MN A 1 702 701 MN MN . D 2 MN A 1 703 702 MN MN . E 3 PGA A 1 704 800 PGA PGA . F 4 GDP A 1 705 900 GDP GDP . G 5 HOH A 1 801 803 HOH HOH . G 5 HOH A 2 802 801 HOH HOH . G 5 HOH A 3 803 802 HOH HOH . G 5 HOH A 4 804 118 HOH HOH . G 5 HOH A 5 805 39 HOH HOH . G 5 HOH A 6 806 113 HOH HOH . G 5 HOH A 7 807 93 HOH HOH . G 5 HOH A 8 808 122 HOH HOH . G 5 HOH A 9 809 9 HOH HOH . G 5 HOH A 10 810 68 HOH HOH . G 5 HOH A 11 811 72 HOH HOH . G 5 HOH A 12 812 17 HOH HOH . G 5 HOH A 13 813 85 HOH HOH . G 5 HOH A 14 814 136 HOH HOH . G 5 HOH A 15 815 29 HOH HOH . G 5 HOH A 16 816 132 HOH HOH . G 5 HOH A 17 817 126 HOH HOH . G 5 HOH A 18 818 94 HOH HOH . G 5 HOH A 19 819 20 HOH HOH . G 5 HOH A 20 820 69 HOH HOH . G 5 HOH A 21 821 44 HOH HOH . G 5 HOH A 22 822 23 HOH HOH . G 5 HOH A 23 823 41 HOH HOH . G 5 HOH A 24 824 3 HOH HOH . G 5 HOH A 25 825 40 HOH HOH . G 5 HOH A 26 826 52 HOH HOH . G 5 HOH A 27 827 33 HOH HOH . G 5 HOH A 28 828 7 HOH HOH . G 5 HOH A 29 829 31 HOH HOH . G 5 HOH A 30 830 6 HOH HOH . G 5 HOH A 31 831 35 HOH HOH . G 5 HOH A 32 832 12 HOH HOH . G 5 HOH A 33 833 47 HOH HOH . G 5 HOH A 34 834 13 HOH HOH . G 5 HOH A 35 835 4 HOH HOH . G 5 HOH A 36 836 77 HOH HOH . G 5 HOH A 37 837 25 HOH HOH . G 5 HOH A 38 838 87 HOH HOH . G 5 HOH A 39 839 21 HOH HOH . G 5 HOH A 40 840 8 HOH HOH . G 5 HOH A 41 841 117 HOH HOH . G 5 HOH A 42 842 127 HOH HOH . G 5 HOH A 43 843 56 HOH HOH . G 5 HOH A 44 844 58 HOH HOH . G 5 HOH A 45 845 108 HOH HOH . G 5 HOH A 46 846 14 HOH HOH . G 5 HOH A 47 847 70 HOH HOH . G 5 HOH A 48 848 2 HOH HOH . G 5 HOH A 49 849 71 HOH HOH . G 5 HOH A 50 850 75 HOH HOH . G 5 HOH A 51 851 83 HOH HOH . G 5 HOH A 52 852 30 HOH HOH . G 5 HOH A 53 853 36 HOH HOH . G 5 HOH A 54 854 15 HOH HOH . G 5 HOH A 55 855 121 HOH HOH . G 5 HOH A 56 856 37 HOH HOH . G 5 HOH A 57 857 76 HOH HOH . G 5 HOH A 58 858 16 HOH HOH . G 5 HOH A 59 859 64 HOH HOH . G 5 HOH A 60 860 27 HOH HOH . G 5 HOH A 61 861 10 HOH HOH . G 5 HOH A 62 862 45 HOH HOH . G 5 HOH A 63 863 24 HOH HOH . G 5 HOH A 64 864 32 HOH HOH . G 5 HOH A 65 865 67 HOH HOH . G 5 HOH A 66 866 131 HOH HOH . G 5 HOH A 67 867 51 HOH HOH . G 5 HOH A 68 868 98 HOH HOH . G 5 HOH A 69 869 38 HOH HOH . G 5 HOH A 70 870 73 HOH HOH . G 5 HOH A 71 871 19 HOH HOH . G 5 HOH A 72 872 84 HOH HOH . G 5 HOH A 73 873 34 HOH HOH . G 5 HOH A 74 874 5 HOH HOH . G 5 HOH A 75 875 43 HOH HOH . G 5 HOH A 76 876 46 HOH HOH . G 5 HOH A 77 877 101 HOH HOH . G 5 HOH A 78 878 112 HOH HOH . G 5 HOH A 79 879 57 HOH HOH . G 5 HOH A 80 880 1 HOH HOH . G 5 HOH A 81 881 28 HOH HOH . G 5 HOH A 82 882 137 HOH HOH . G 5 HOH A 83 883 61 HOH HOH . G 5 HOH A 84 884 11 HOH HOH . G 5 HOH A 85 885 55 HOH HOH . G 5 HOH A 86 886 22 HOH HOH . G 5 HOH A 87 887 114 HOH HOH . G 5 HOH A 88 888 65 HOH HOH . G 5 HOH A 89 889 115 HOH HOH . G 5 HOH A 90 890 78 HOH HOH . G 5 HOH A 91 891 18 HOH HOH . G 5 HOH A 92 892 124 HOH HOH . G 5 HOH A 93 893 50 HOH HOH . G 5 HOH A 94 894 54 HOH HOH . G 5 HOH A 95 895 97 HOH HOH . G 5 HOH A 96 896 74 HOH HOH . G 5 HOH A 97 897 86 HOH HOH . G 5 HOH A 98 898 42 HOH HOH . G 5 HOH A 99 899 95 HOH HOH . G 5 HOH A 100 900 48 HOH HOH . G 5 HOH A 101 901 49 HOH HOH . G 5 HOH A 102 902 79 HOH HOH . G 5 HOH A 103 903 80 HOH HOH . G 5 HOH A 104 904 63 HOH HOH . G 5 HOH A 105 905 92 HOH HOH . G 5 HOH A 106 906 139 HOH HOH . G 5 HOH A 107 907 96 HOH HOH . G 5 HOH A 108 908 90 HOH HOH . G 5 HOH A 109 909 105 HOH HOH . G 5 HOH A 110 910 109 HOH HOH . G 5 HOH A 111 911 88 HOH HOH . G 5 HOH A 112 912 133 HOH HOH . G 5 HOH A 113 913 103 HOH HOH . G 5 HOH A 114 914 62 HOH HOH . G 5 HOH A 115 915 53 HOH HOH . G 5 HOH A 116 916 81 HOH HOH . G 5 HOH A 117 917 141 HOH HOH . G 5 HOH A 118 918 66 HOH HOH . G 5 HOH A 119 919 60 HOH HOH . G 5 HOH A 120 920 59 HOH HOH . G 5 HOH A 121 921 104 HOH HOH . G 5 HOH A 122 922 134 HOH HOH . G 5 HOH A 123 923 125 HOH HOH . G 5 HOH A 124 924 26 HOH HOH . G 5 HOH A 125 925 119 HOH HOH . G 5 HOH A 126 926 102 HOH HOH . G 5 HOH A 127 927 123 HOH HOH . G 5 HOH A 128 928 129 HOH HOH . G 5 HOH A 129 929 82 HOH HOH . G 5 HOH A 130 930 100 HOH HOH . G 5 HOH A 131 931 116 HOH HOH . G 5 HOH A 132 932 138 HOH HOH . G 5 HOH A 133 933 99 HOH HOH . G 5 HOH A 134 934 110 HOH HOH . G 5 HOH A 135 935 120 HOH HOH . G 5 HOH A 136 936 107 HOH HOH . G 5 HOH A 137 937 142 HOH HOH . G 5 HOH A 138 938 91 HOH HOH . G 5 HOH A 139 939 130 HOH HOH . G 5 HOH A 140 940 135 HOH HOH . G 5 HOH A 141 941 89 HOH HOH . G 5 HOH A 142 942 106 HOH HOH . G 5 HOH A 143 943 111 HOH HOH . G 5 HOH A 144 944 128 HOH HOH . G 5 HOH A 145 945 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PGA . A . E 3 -2.52 -1.436 11.708 0.22 43.87 ? P PGA 704 A 1 HETATM 2 P P PGA . B . E 3 -0.431 -3.053 10.166 0.5 46.51 ? P PGA 704 A 1 HETATM 3 P P PGA . C . E 3 0.701 -3.307 9.867 0.28 50.03 ? P PGA 704 A 1 HETATM 4 O O1P PGA . A . E 3 -1.727 -1.865 10.374 0.22 45.85 ? O1P PGA 704 A 1 HETATM 5 O O1P PGA . B . E 3 0.413 -4.161 9.361 0.5 50.51 ? O1P PGA 704 A 1 HETATM 6 O O1P PGA . C . E 3 1.13 -4.775 9.367 0.28 49.63 ? O1P PGA 704 A 1 HETATM 7 O O2P PGA . A . E 3 -1.527 -0.768 12.625 0.22 46.09 ? O2P PGA 704 A 1 HETATM 8 O O2P PGA . B . E 3 -0.939 -3.658 11.452 0.5 45.81 ? O2P PGA 704 A 1 HETATM 9 O O2P PGA . C . E 3 -0.803 -3.178 9.828 0.28 46.4 ? O2P PGA 704 A 1 HETATM 10 O O3P PGA . A . E 3 -3.09 -2.66 12.386 0.22 45.69 ? O3P PGA 704 A 1 HETATM 11 O O3P PGA . B . E 3 -1.584 -2.578 9.318 0.5 45.51 ? O3P PGA 704 A 1 HETATM 12 O O3P PGA . C . E 3 1.337 -2.265 8.981 0.28 47.63 ? O3P PGA 704 A 1 HETATM 13 O O4P PGA . A . E 3 -3.627 -0.466 11.375 0.22 42.63 ? O4P PGA 704 A 1 HETATM 14 O O4P PGA . B . E 3 0.477 -1.887 10.48 0.5 48.34 ? O4P PGA 704 A 1 HETATM 15 O O4P PGA . C . E 3 1.187 -3.125 11.284 0.28 47.6 ? O4P PGA 704 A 1 HETATM 16 C C2 PGA . A . E 3 -0.801 -2.926 10.428 0.22 46.58 ? C2 PGA 704 A 1 HETATM 17 C C2 PGA . B . E 3 -0.096 -4.801 8.214 0.5 46.38 ? C2 PGA 704 A 1 HETATM 18 C C2 PGA . C . E 3 2.135 -4.946 8.392 0.28 48.82 ? C2 PGA 704 A 1 HETATM 19 C C1 PGA . A . E 3 0.53 -2.446 9.898 0.22 47.79 ? C1 PGA 704 A 1 HETATM 20 C C1 PGA . B . E 3 1.08 -5.321 7.419 0.5 45.29 ? C1 PGA 704 A 1 HETATM 21 C C1 PGA . C . E 3 2.446 -6.418 8.259 0.28 48.58 ? C1 PGA 704 A 1 HETATM 22 O O1 PGA . A . E 3 0.686 -1.248 9.579 0.22 46.15 ? O1 PGA 704 A 1 HETATM 23 O O1 PGA . B . E 3 1.546 -6.466 7.625 0.5 46.66 ? O1 PGA 704 A 1 HETATM 24 O O1 PGA . C . E 3 3.273 -6.965 9.023 0.28 47.13 ? O1 PGA 704 A 1 HETATM 25 O O2 PGA . A . E 3 1.496 -3.23 9.785 0.22 49.71 ? O2 PGA 704 A 1 HETATM 26 O O2 PGA . B . E 3 1.613 -4.596 6.551 0.5 47.74 ? O2 PGA 704 A 1 HETATM 27 O O2 PGA . C . E 3 1.883 -7.103 7.379 0.28 48.24 ? O2 PGA 704 A 1 HETATM 28 H H21 PGA . A . E 3 -1.159 -3.764 9.83 0.22 55.95 ? H21 PGA 704 A 1 HETATM 29 H H21 PGA . B . E 3 -0.677 -4.1 7.615 0.5 55.71 ? H21 PGA 704 A 1 HETATM 30 H H21 PGA . C . E 3 3.033 -4.4 8.683 0.28 58.64 ? H21 PGA 704 A 1 HETATM 31 H H22 PGA . A . E 3 -0.689 -3.271 11.456 0.22 55.95 ? H22 PGA 704 A 1 HETATM 32 H H22 PGA . B . E 3 -0.754 -5.623 8.499 0.5 55.71 ? H22 PGA 704 A 1 HETATM 33 H H22 PGA . C . E 3 1.797 -4.548 7.435 0.28 58.64 ? H22 PGA 704 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #