data_9EJ1 # _model_server_result.job_id '_QbzyBRPuhFurxUh8_e-Hw' _model_server_result.datetime_utc '2025-07-06 13:56:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ej1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":703}' # _entry.id 9EJ1 # _exptl.entry_id 9EJ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.66 _cell.angle_gamma 90 _cell.entry_id 9EJ1 _cell.length_a 45.315 _cell.length_b 119.834 _cell.length_c 60.826 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9EJ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NZ LYS 244 A LYS 244 1_555 C MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc2 A NE2 HIS 264 A HIS 264 1_555 C MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc3 A OG1 THR 291 A THR 291 1_555 B MN MN . A MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc4 A OD1 ASP 311 A ASP 311 1_555 C MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc5 A NE2 HIS 502 A HIS 502 1_555 D MN MN . A MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc6 B MN MN . A MN 701 1_555 F O1B GTP . A GTP 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc7 B MN MN . A MN 701 1_555 F O1G GTP . A GTP 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc8 B MN MN . A MN 701 1_555 H O HOH . A HOH 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc9 B MN MN . A MN 701 1_555 H O HOH . A HOH 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc10 B MN MN . A MN 701 1_555 H O HOH . A HOH 855 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc11 C MN MN . A MN 702 1_555 E O1 OXL . A OXL 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc12 C MN MN . A MN 702 1_555 E O2 OXL . A OXL 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc13 C MN MN . A MN 702 1_555 F O3G GTP . A GTP 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9EJ1 _atom_sites.fract_transf_matrix[1][1] 0.022068 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008764 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017689 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 701 700 MN MN . C 2 MN A 1 702 701 MN MN . D 2 MN A 1 703 702 MN MN . E 3 OXL A 1 704 800 OXL OXL . F 4 GTP A 1 705 900 GTP GTP . G 5 PGE A 1 706 1100 PGE 1PE . H 6 HOH A 1 801 121 HOH HOH . H 6 HOH A 2 802 109 HOH HOH . H 6 HOH A 3 803 99 HOH HOH . H 6 HOH A 4 804 23 HOH HOH . H 6 HOH A 5 805 31 HOH HOH . H 6 HOH A 6 806 140 HOH HOH . H 6 HOH A 7 807 130 HOH HOH . H 6 HOH A 8 808 28 HOH HOH . H 6 HOH A 9 809 125 HOH HOH . H 6 HOH A 10 810 66 HOH HOH . H 6 HOH A 11 811 98 HOH HOH . H 6 HOH A 12 812 149 HOH HOH . H 6 HOH A 13 813 101 HOH HOH . H 6 HOH A 14 814 95 HOH HOH . H 6 HOH A 15 815 55 HOH HOH . H 6 HOH A 16 816 21 HOH HOH . H 6 HOH A 17 817 54 HOH HOH . H 6 HOH A 18 818 157 HOH HOH . H 6 HOH A 19 819 69 HOH HOH . H 6 HOH A 20 820 96 HOH HOH . H 6 HOH A 21 821 73 HOH HOH . H 6 HOH A 22 822 136 HOH HOH . H 6 HOH A 23 823 135 HOH HOH . H 6 HOH A 24 824 22 HOH HOH . H 6 HOH A 25 825 56 HOH HOH . H 6 HOH A 26 826 37 HOH HOH . H 6 HOH A 27 827 75 HOH HOH . H 6 HOH A 28 828 81 HOH HOH . H 6 HOH A 29 829 159 HOH HOH . H 6 HOH A 30 830 39 HOH HOH . H 6 HOH A 31 831 29 HOH HOH . H 6 HOH A 32 832 126 HOH HOH . H 6 HOH A 33 833 49 HOH HOH . H 6 HOH A 34 834 11 HOH HOH . H 6 HOH A 35 835 7 HOH HOH . H 6 HOH A 36 836 92 HOH HOH . H 6 HOH A 37 837 45 HOH HOH . H 6 HOH A 38 838 169 HOH HOH . H 6 HOH A 39 839 65 HOH HOH . H 6 HOH A 40 840 160 HOH HOH . H 6 HOH A 41 841 85 HOH HOH . H 6 HOH A 42 842 35 HOH HOH . H 6 HOH A 43 843 8 HOH HOH . H 6 HOH A 44 844 63 HOH HOH . H 6 HOH A 45 845 168 HOH HOH . H 6 HOH A 46 846 60 HOH HOH . H 6 HOH A 47 847 115 HOH HOH . H 6 HOH A 48 848 33 HOH HOH . H 6 HOH A 49 849 36 HOH HOH . H 6 HOH A 50 850 46 HOH HOH . H 6 HOH A 51 851 27 HOH HOH . H 6 HOH A 52 852 79 HOH HOH . H 6 HOH A 53 853 61 HOH HOH . H 6 HOH A 54 854 133 HOH HOH . H 6 HOH A 55 855 20 HOH HOH . H 6 HOH A 56 856 38 HOH HOH . H 6 HOH A 57 857 34 HOH HOH . H 6 HOH A 58 858 87 HOH HOH . H 6 HOH A 59 859 84 HOH HOH . H 6 HOH A 60 860 100 HOH HOH . H 6 HOH A 61 861 76 HOH HOH . H 6 HOH A 62 862 30 HOH HOH . H 6 HOH A 63 863 44 HOH HOH . H 6 HOH A 64 864 74 HOH HOH . H 6 HOH A 65 865 5 HOH HOH . H 6 HOH A 66 866 111 HOH HOH . H 6 HOH A 67 867 71 HOH HOH . H 6 HOH A 68 868 24 HOH HOH . H 6 HOH A 69 869 131 HOH HOH . H 6 HOH A 70 870 70 HOH HOH . H 6 HOH A 71 871 41 HOH HOH . H 6 HOH A 72 872 53 HOH HOH . H 6 HOH A 73 873 13 HOH HOH . H 6 HOH A 74 874 67 HOH HOH . H 6 HOH A 75 875 72 HOH HOH . H 6 HOH A 76 876 106 HOH HOH . H 6 HOH A 77 877 52 HOH HOH . H 6 HOH A 78 878 32 HOH HOH . H 6 HOH A 79 879 145 HOH HOH . H 6 HOH A 80 880 166 HOH HOH . H 6 HOH A 81 881 119 HOH HOH . H 6 HOH A 82 882 47 HOH HOH . H 6 HOH A 83 883 151 HOH HOH . H 6 HOH A 84 884 113 HOH HOH . H 6 HOH A 85 885 1 HOH HOH . H 6 HOH A 86 886 83 HOH HOH . H 6 HOH A 87 887 6 HOH HOH . H 6 HOH A 88 888 108 HOH HOH . H 6 HOH A 89 889 102 HOH HOH . H 6 HOH A 90 890 104 HOH HOH . H 6 HOH A 91 891 148 HOH HOH . H 6 HOH A 92 892 91 HOH HOH . H 6 HOH A 93 893 97 HOH HOH . H 6 HOH A 94 894 62 HOH HOH . H 6 HOH A 95 895 16 HOH HOH . H 6 HOH A 96 896 68 HOH HOH . H 6 HOH A 97 897 78 HOH HOH . H 6 HOH A 98 898 10 HOH HOH . H 6 HOH A 99 899 18 HOH HOH . H 6 HOH A 100 900 14 HOH HOH . H 6 HOH A 101 901 138 HOH HOH . H 6 HOH A 102 902 89 HOH HOH . H 6 HOH A 103 903 15 HOH HOH . H 6 HOH A 104 904 43 HOH HOH . H 6 HOH A 105 905 59 HOH HOH . H 6 HOH A 106 906 3 HOH HOH . H 6 HOH A 107 907 152 HOH HOH . H 6 HOH A 108 908 163 HOH HOH . H 6 HOH A 109 909 12 HOH HOH . H 6 HOH A 110 910 58 HOH HOH . H 6 HOH A 111 911 77 HOH HOH . H 6 HOH A 112 912 90 HOH HOH . H 6 HOH A 113 913 120 HOH HOH . H 6 HOH A 114 914 93 HOH HOH . H 6 HOH A 115 915 143 HOH HOH . H 6 HOH A 116 916 122 HOH HOH . H 6 HOH A 117 917 80 HOH HOH . H 6 HOH A 118 918 9 HOH HOH . H 6 HOH A 119 919 118 HOH HOH . H 6 HOH A 120 920 161 HOH HOH . H 6 HOH A 121 921 17 HOH HOH . H 6 HOH A 122 922 107 HOH HOH . H 6 HOH A 123 923 57 HOH HOH . H 6 HOH A 124 924 19 HOH HOH . H 6 HOH A 125 925 4 HOH HOH . H 6 HOH A 126 926 94 HOH HOH . H 6 HOH A 127 927 42 HOH HOH . H 6 HOH A 128 928 64 HOH HOH . H 6 HOH A 129 929 123 HOH HOH . H 6 HOH A 130 930 40 HOH HOH . H 6 HOH A 131 931 124 HOH HOH . H 6 HOH A 132 932 86 HOH HOH . H 6 HOH A 133 933 137 HOH HOH . H 6 HOH A 134 934 82 HOH HOH . H 6 HOH A 135 935 117 HOH HOH . H 6 HOH A 136 936 141 HOH HOH . H 6 HOH A 137 937 105 HOH HOH . H 6 HOH A 138 938 51 HOH HOH . H 6 HOH A 139 939 132 HOH HOH . H 6 HOH A 140 940 25 HOH HOH . H 6 HOH A 141 941 50 HOH HOH . H 6 HOH A 142 942 162 HOH HOH . H 6 HOH A 143 943 48 HOH HOH . H 6 HOH A 144 944 150 HOH HOH . H 6 HOH A 145 945 165 HOH HOH . H 6 HOH A 146 946 110 HOH HOH . H 6 HOH A 147 947 129 HOH HOH . H 6 HOH A 148 948 88 HOH HOH . H 6 HOH A 149 949 164 HOH HOH . H 6 HOH A 150 950 167 HOH HOH . H 6 HOH A 151 951 158 HOH HOH . H 6 HOH A 152 952 127 HOH HOH . H 6 HOH A 153 953 112 HOH HOH . H 6 HOH A 154 954 128 HOH HOH . H 6 HOH A 155 955 2 HOH HOH . H 6 HOH A 156 956 144 HOH HOH . H 6 HOH A 157 957 116 HOH HOH . H 6 HOH A 158 958 26 HOH HOH . H 6 HOH A 159 959 142 HOH HOH . H 6 HOH A 160 960 146 HOH HOH . H 6 HOH A 161 961 170 HOH HOH . H 6 HOH A 162 962 147 HOH HOH . H 6 HOH A 163 963 153 HOH HOH . H 6 HOH A 164 964 134 HOH HOH . H 6 HOH A 165 965 155 HOH HOH . H 6 HOH A 166 966 154 HOH HOH . H 6 HOH A 167 967 114 HOH HOH . H 6 HOH A 168 968 156 HOH HOH . H 6 HOH A 169 969 103 HOH HOH . H 6 HOH A 170 970 139 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 18.245 _atom_site.Cartn_y 28.476 _atom_site.Cartn_z 2.877 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 98.96 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 703 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 1 #