data_9EJ1 # _model_server_result.job_id K-XthXOgeEZhHYwQwSvPxg _model_server_result.datetime_utc '2025-07-06 14:26:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ej1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":706}' # _entry.id 9EJ1 # _exptl.entry_id 9EJ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.66 _cell.angle_gamma 90 _cell.entry_id 9EJ1 _cell.length_a 45.315 _cell.length_b 119.834 _cell.length_c 60.826 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9EJ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NZ LYS 244 A LYS 244 1_555 C MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc2 A NE2 HIS 264 A HIS 264 1_555 C MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc3 A OG1 THR 291 A THR 291 1_555 B MN MN . A MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc4 A OD1 ASP 311 A ASP 311 1_555 C MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc5 A NE2 HIS 502 A HIS 502 1_555 D MN MN . A MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc6 B MN MN . A MN 701 1_555 F O1B GTP . A GTP 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc7 B MN MN . A MN 701 1_555 F O1G GTP . A GTP 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc8 B MN MN . A MN 701 1_555 H O HOH . A HOH 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc9 B MN MN . A MN 701 1_555 H O HOH . A HOH 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc10 B MN MN . A MN 701 1_555 H O HOH . A HOH 855 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc11 C MN MN . A MN 702 1_555 E O1 OXL . A OXL 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc12 C MN MN . A MN 702 1_555 E O2 OXL . A OXL 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc13 C MN MN . A MN 702 1_555 F O3G GTP . A GTP 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 292 n n C1 C2 PGE sing 293 n n C1 H1 PGE sing 294 n n C1 H12 PGE sing 295 n n O1 HO1 PGE sing 296 n n C2 O2 PGE sing 297 n n C2 H2 PGE sing 298 n n C2 H22 PGE sing 299 n n O2 C3 PGE sing 300 n n C3 C4 PGE sing 301 n n C3 H3 PGE sing 302 n n C3 H32 PGE sing 303 n n C4 O3 PGE sing 304 n n C4 H4 PGE sing 305 n n C4 H42 PGE sing 306 n n O4 C6 PGE sing 307 n n O4 HO4 PGE sing 308 n n C6 C5 PGE sing 309 n n C6 H6 PGE sing 310 n n C6 H62 PGE sing 311 n n C5 O3 PGE sing 312 n n C5 H5 PGE sing 313 n n C5 H52 PGE sing 314 n n # _atom_sites.entry_id 9EJ1 _atom_sites.fract_transf_matrix[1][1] 0.022068 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008764 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017689 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 701 700 MN MN . C 2 MN A 1 702 701 MN MN . D 2 MN A 1 703 702 MN MN . E 3 OXL A 1 704 800 OXL OXL . F 4 GTP A 1 705 900 GTP GTP . G 5 PGE A 1 706 1100 PGE 1PE . H 6 HOH A 1 801 121 HOH HOH . H 6 HOH A 2 802 109 HOH HOH . H 6 HOH A 3 803 99 HOH HOH . H 6 HOH A 4 804 23 HOH HOH . H 6 HOH A 5 805 31 HOH HOH . H 6 HOH A 6 806 140 HOH HOH . H 6 HOH A 7 807 130 HOH HOH . H 6 HOH A 8 808 28 HOH HOH . H 6 HOH A 9 809 125 HOH HOH . H 6 HOH A 10 810 66 HOH HOH . H 6 HOH A 11 811 98 HOH HOH . H 6 HOH A 12 812 149 HOH HOH . H 6 HOH A 13 813 101 HOH HOH . H 6 HOH A 14 814 95 HOH HOH . H 6 HOH A 15 815 55 HOH HOH . H 6 HOH A 16 816 21 HOH HOH . H 6 HOH A 17 817 54 HOH HOH . H 6 HOH A 18 818 157 HOH HOH . H 6 HOH A 19 819 69 HOH HOH . H 6 HOH A 20 820 96 HOH HOH . H 6 HOH A 21 821 73 HOH HOH . H 6 HOH A 22 822 136 HOH HOH . H 6 HOH A 23 823 135 HOH HOH . H 6 HOH A 24 824 22 HOH HOH . H 6 HOH A 25 825 56 HOH HOH . H 6 HOH A 26 826 37 HOH HOH . H 6 HOH A 27 827 75 HOH HOH . H 6 HOH A 28 828 81 HOH HOH . H 6 HOH A 29 829 159 HOH HOH . H 6 HOH A 30 830 39 HOH HOH . H 6 HOH A 31 831 29 HOH HOH . H 6 HOH A 32 832 126 HOH HOH . H 6 HOH A 33 833 49 HOH HOH . H 6 HOH A 34 834 11 HOH HOH . H 6 HOH A 35 835 7 HOH HOH . H 6 HOH A 36 836 92 HOH HOH . H 6 HOH A 37 837 45 HOH HOH . H 6 HOH A 38 838 169 HOH HOH . H 6 HOH A 39 839 65 HOH HOH . H 6 HOH A 40 840 160 HOH HOH . H 6 HOH A 41 841 85 HOH HOH . H 6 HOH A 42 842 35 HOH HOH . H 6 HOH A 43 843 8 HOH HOH . H 6 HOH A 44 844 63 HOH HOH . H 6 HOH A 45 845 168 HOH HOH . H 6 HOH A 46 846 60 HOH HOH . H 6 HOH A 47 847 115 HOH HOH . H 6 HOH A 48 848 33 HOH HOH . H 6 HOH A 49 849 36 HOH HOH . H 6 HOH A 50 850 46 HOH HOH . H 6 HOH A 51 851 27 HOH HOH . H 6 HOH A 52 852 79 HOH HOH . H 6 HOH A 53 853 61 HOH HOH . H 6 HOH A 54 854 133 HOH HOH . H 6 HOH A 55 855 20 HOH HOH . H 6 HOH A 56 856 38 HOH HOH . H 6 HOH A 57 857 34 HOH HOH . H 6 HOH A 58 858 87 HOH HOH . H 6 HOH A 59 859 84 HOH HOH . H 6 HOH A 60 860 100 HOH HOH . H 6 HOH A 61 861 76 HOH HOH . H 6 HOH A 62 862 30 HOH HOH . H 6 HOH A 63 863 44 HOH HOH . H 6 HOH A 64 864 74 HOH HOH . H 6 HOH A 65 865 5 HOH HOH . H 6 HOH A 66 866 111 HOH HOH . H 6 HOH A 67 867 71 HOH HOH . H 6 HOH A 68 868 24 HOH HOH . H 6 HOH A 69 869 131 HOH HOH . H 6 HOH A 70 870 70 HOH HOH . H 6 HOH A 71 871 41 HOH HOH . H 6 HOH A 72 872 53 HOH HOH . H 6 HOH A 73 873 13 HOH HOH . H 6 HOH A 74 874 67 HOH HOH . H 6 HOH A 75 875 72 HOH HOH . H 6 HOH A 76 876 106 HOH HOH . H 6 HOH A 77 877 52 HOH HOH . H 6 HOH A 78 878 32 HOH HOH . H 6 HOH A 79 879 145 HOH HOH . H 6 HOH A 80 880 166 HOH HOH . H 6 HOH A 81 881 119 HOH HOH . H 6 HOH A 82 882 47 HOH HOH . H 6 HOH A 83 883 151 HOH HOH . H 6 HOH A 84 884 113 HOH HOH . H 6 HOH A 85 885 1 HOH HOH . H 6 HOH A 86 886 83 HOH HOH . H 6 HOH A 87 887 6 HOH HOH . H 6 HOH A 88 888 108 HOH HOH . H 6 HOH A 89 889 102 HOH HOH . H 6 HOH A 90 890 104 HOH HOH . H 6 HOH A 91 891 148 HOH HOH . H 6 HOH A 92 892 91 HOH HOH . H 6 HOH A 93 893 97 HOH HOH . H 6 HOH A 94 894 62 HOH HOH . H 6 HOH A 95 895 16 HOH HOH . H 6 HOH A 96 896 68 HOH HOH . H 6 HOH A 97 897 78 HOH HOH . H 6 HOH A 98 898 10 HOH HOH . H 6 HOH A 99 899 18 HOH HOH . H 6 HOH A 100 900 14 HOH HOH . H 6 HOH A 101 901 138 HOH HOH . H 6 HOH A 102 902 89 HOH HOH . H 6 HOH A 103 903 15 HOH HOH . H 6 HOH A 104 904 43 HOH HOH . H 6 HOH A 105 905 59 HOH HOH . H 6 HOH A 106 906 3 HOH HOH . H 6 HOH A 107 907 152 HOH HOH . H 6 HOH A 108 908 163 HOH HOH . H 6 HOH A 109 909 12 HOH HOH . H 6 HOH A 110 910 58 HOH HOH . H 6 HOH A 111 911 77 HOH HOH . H 6 HOH A 112 912 90 HOH HOH . H 6 HOH A 113 913 120 HOH HOH . H 6 HOH A 114 914 93 HOH HOH . H 6 HOH A 115 915 143 HOH HOH . H 6 HOH A 116 916 122 HOH HOH . H 6 HOH A 117 917 80 HOH HOH . H 6 HOH A 118 918 9 HOH HOH . H 6 HOH A 119 919 118 HOH HOH . H 6 HOH A 120 920 161 HOH HOH . H 6 HOH A 121 921 17 HOH HOH . H 6 HOH A 122 922 107 HOH HOH . H 6 HOH A 123 923 57 HOH HOH . H 6 HOH A 124 924 19 HOH HOH . H 6 HOH A 125 925 4 HOH HOH . H 6 HOH A 126 926 94 HOH HOH . H 6 HOH A 127 927 42 HOH HOH . H 6 HOH A 128 928 64 HOH HOH . H 6 HOH A 129 929 123 HOH HOH . H 6 HOH A 130 930 40 HOH HOH . H 6 HOH A 131 931 124 HOH HOH . H 6 HOH A 132 932 86 HOH HOH . H 6 HOH A 133 933 137 HOH HOH . H 6 HOH A 134 934 82 HOH HOH . H 6 HOH A 135 935 117 HOH HOH . H 6 HOH A 136 936 141 HOH HOH . H 6 HOH A 137 937 105 HOH HOH . H 6 HOH A 138 938 51 HOH HOH . H 6 HOH A 139 939 132 HOH HOH . H 6 HOH A 140 940 25 HOH HOH . H 6 HOH A 141 941 50 HOH HOH . H 6 HOH A 142 942 162 HOH HOH . H 6 HOH A 143 943 48 HOH HOH . H 6 HOH A 144 944 150 HOH HOH . H 6 HOH A 145 945 165 HOH HOH . H 6 HOH A 146 946 110 HOH HOH . H 6 HOH A 147 947 129 HOH HOH . H 6 HOH A 148 948 88 HOH HOH . H 6 HOH A 149 949 164 HOH HOH . H 6 HOH A 150 950 167 HOH HOH . H 6 HOH A 151 951 158 HOH HOH . H 6 HOH A 152 952 127 HOH HOH . H 6 HOH A 153 953 112 HOH HOH . H 6 HOH A 154 954 128 HOH HOH . H 6 HOH A 155 955 2 HOH HOH . H 6 HOH A 156 956 144 HOH HOH . H 6 HOH A 157 957 116 HOH HOH . H 6 HOH A 158 958 26 HOH HOH . H 6 HOH A 159 959 142 HOH HOH . H 6 HOH A 160 960 146 HOH HOH . H 6 HOH A 161 961 170 HOH HOH . H 6 HOH A 162 962 147 HOH HOH . H 6 HOH A 163 963 153 HOH HOH . H 6 HOH A 164 964 134 HOH HOH . H 6 HOH A 165 965 155 HOH HOH . H 6 HOH A 166 966 154 HOH HOH . H 6 HOH A 167 967 114 HOH HOH . H 6 HOH A 168 968 156 HOH HOH . H 6 HOH A 169 969 103 HOH HOH . H 6 HOH A 170 970 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . G 5 4.744 10.516 -3.145 1 55.02 ? C1 PGE 706 A 1 HETATM 2 O O1 PGE . . . G 5 4.326 11.04 -4.394 1 72.25 ? O1 PGE 706 A 1 HETATM 3 C C2 PGE . . . G 5 6.018 9.742 -3.279 1 56.14 ? C2 PGE 706 A 1 HETATM 4 O O2 PGE . . . G 5 6.344 9.149 -2.031 1 55.17 ? O2 PGE 706 A 1 HETATM 5 C C3 PGE . . . G 5 7.728 9.233 -1.721 1 50.86 ? C3 PGE 706 A 1 HETATM 6 C C4 PGE . . . G 5 8.493 8.182 -2.454 1 44.8 ? C4 PGE 706 A 1 HETATM 7 O O4 PGE . . . G 5 10.74 9.452 -5.778 1 50.22 ? O4 PGE 706 A 1 HETATM 8 C C6 PGE . . . G 5 10.702 8.124 -5.282 1 51.08 ? C6 PGE 706 A 1 HETATM 9 C C5 PGE . . . G 5 10.425 8.138 -3.815 1 43.08 ? C5 PGE 706 A 1 HETATM 10 O O3 PGE . . . G 5 9.171 8.753 -3.563 1 49.93 ? O3 PGE 706 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #