data_9EJ5 # _model_server_result.job_id -W9YLCcMd5HlDWyaMGXf8A _model_server_result.datetime_utc '2025-07-04 22:54:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ej5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":703}' # _entry.id 9EJ5 # _exptl.entry_id 9EJ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.39 _cell.angle_gamma 90 _cell.entry_id 9EJ5 _cell.length_a 44.818 _cell.length_b 119.735 _cell.length_c 60.552 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9EJ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 63 A GLU 63 1_555 D MN MN . A MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc2 A NZ LYS 244 A LYS 244 1_555 B MN MN . A MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc3 A NE2 HIS 264 A HIS 264 1_555 B MN MN . A MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc4 A OG1 THR 291 A THR 291 1_555 C MN MN . A MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc5 A OD1 ASP 311 A ASP 311 1_555 B MN MN . A MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc6 A NE2 HIS 502 A HIS 502 1_555 D MN MN . A MN 703 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc7 A OE2 GLU 607 A GLU 607 1_555 D MN MN . A MN 703 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc8 B MN MN . A MN 701 1_555 E O1 SPV . A SPV 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc9 B MN MN . A MN 701 1_555 E O2 SPV . A SPV 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc10 B MN MN . A MN 701 1_555 F O1G GTP . A GTP 705 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.063 ? metalc ? metalc11 B MN MN . A MN 701 1_555 F O2G GTP . A GTP 705 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.373 ? metalc ? metalc12 C MN MN . A MN 702 1_555 F O1G GTP . A GTP 705 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.208 ? metalc ? metalc13 C MN MN . A MN 702 1_555 F O3G GTP . A GTP 705 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.148 ? metalc ? metalc14 C MN MN . A MN 702 1_555 F O2B GTP . A GTP 705 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.04 ? metalc ? metalc15 C MN MN . A MN 702 1_555 F O2B GTP . A GTP 705 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.226 ? metalc ? metalc16 C MN MN . A MN 702 1_555 G O HOH . A HOH 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc17 C MN MN . A MN 702 1_555 G O HOH . A HOH 827 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc18 C MN MN . A MN 702 1_555 G O HOH . A HOH 833 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc19 D MN MN . A MN 703 1_555 G O HOH . A HOH 832 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc20 D MN MN . A MN 703 1_555 G O HOH . A HOH 881 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc21 D MN MN . A MN 703 1_555 G O HOH . A HOH 895 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9EJ5 _atom_sites.fract_transf_matrix[1][1] 0.022312 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00874 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008352 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017736 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 701 700 MN MN . C 2 MN A 1 702 701 MN MN . D 2 MN A 1 703 702 MN MN . E 3 SPV A 1 704 800 SPV SPV . F 4 GTP A 1 705 900 GTP GTP . G 5 HOH A 1 801 198 HOH HOH . G 5 HOH A 2 802 177 HOH HOH . G 5 HOH A 3 803 82 HOH HOH . G 5 HOH A 4 804 67 HOH HOH . G 5 HOH A 5 805 111 HOH HOH . G 5 HOH A 6 806 36 HOH HOH . G 5 HOH A 7 807 80 HOH HOH . G 5 HOH A 8 808 147 HOH HOH . G 5 HOH A 9 809 172 HOH HOH . G 5 HOH A 10 810 161 HOH HOH . G 5 HOH A 11 811 63 HOH HOH . G 5 HOH A 12 812 62 HOH HOH . G 5 HOH A 13 813 206 HOH HOH . G 5 HOH A 14 814 215 HOH HOH . G 5 HOH A 15 815 96 HOH HOH . G 5 HOH A 16 816 181 HOH HOH . G 5 HOH A 17 817 207 HOH HOH . G 5 HOH A 18 818 112 HOH HOH . G 5 HOH A 19 819 129 HOH HOH . G 5 HOH A 20 820 30 HOH HOH . G 5 HOH A 21 821 165 HOH HOH . G 5 HOH A 22 822 89 HOH HOH . G 5 HOH A 23 823 49 HOH HOH . G 5 HOH A 24 824 97 HOH HOH . G 5 HOH A 25 825 151 HOH HOH . G 5 HOH A 26 826 115 HOH HOH . G 5 HOH A 27 827 156 HOH HOH . G 5 HOH A 28 828 7 HOH HOH . G 5 HOH A 29 829 72 HOH HOH . G 5 HOH A 30 830 108 HOH HOH . G 5 HOH A 31 831 86 HOH HOH . G 5 HOH A 32 832 217 HOH HOH . G 5 HOH A 33 833 46 HOH HOH . G 5 HOH A 34 834 167 HOH HOH . G 5 HOH A 35 835 22 HOH HOH . G 5 HOH A 36 836 105 HOH HOH . G 5 HOH A 37 837 14 HOH HOH . G 5 HOH A 38 838 121 HOH HOH . G 5 HOH A 39 839 1 HOH HOH . G 5 HOH A 40 840 32 HOH HOH . G 5 HOH A 41 841 150 HOH HOH . G 5 HOH A 42 842 15 HOH HOH . G 5 HOH A 43 843 59 HOH HOH . G 5 HOH A 44 844 6 HOH HOH . G 5 HOH A 45 845 103 HOH HOH . G 5 HOH A 46 846 144 HOH HOH . G 5 HOH A 47 847 178 HOH HOH . G 5 HOH A 48 848 213 HOH HOH . G 5 HOH A 49 849 189 HOH HOH . G 5 HOH A 50 850 13 HOH HOH . G 5 HOH A 51 851 55 HOH HOH . G 5 HOH A 52 852 11 HOH HOH . G 5 HOH A 53 853 107 HOH HOH . G 5 HOH A 54 854 69 HOH HOH . G 5 HOH A 55 855 39 HOH HOH . G 5 HOH A 56 856 23 HOH HOH . G 5 HOH A 57 857 164 HOH HOH . G 5 HOH A 58 858 54 HOH HOH . G 5 HOH A 59 859 35 HOH HOH . G 5 HOH A 60 860 25 HOH HOH . G 5 HOH A 61 861 145 HOH HOH . G 5 HOH A 62 862 136 HOH HOH . G 5 HOH A 63 863 28 HOH HOH . G 5 HOH A 64 864 57 HOH HOH . G 5 HOH A 65 865 21 HOH HOH . G 5 HOH A 66 866 79 HOH HOH . G 5 HOH A 67 867 42 HOH HOH . G 5 HOH A 68 868 192 HOH HOH . G 5 HOH A 69 869 8 HOH HOH . G 5 HOH A 70 870 152 HOH HOH . G 5 HOH A 71 871 113 HOH HOH . G 5 HOH A 72 872 176 HOH HOH . G 5 HOH A 73 873 200 HOH HOH . G 5 HOH A 74 874 38 HOH HOH . G 5 HOH A 75 875 40 HOH HOH . G 5 HOH A 76 876 27 HOH HOH . G 5 HOH A 77 877 52 HOH HOH . G 5 HOH A 78 878 3 HOH HOH . G 5 HOH A 79 879 24 HOH HOH . G 5 HOH A 80 880 9 HOH HOH . G 5 HOH A 81 881 216 HOH HOH . G 5 HOH A 82 882 100 HOH HOH . G 5 HOH A 83 883 208 HOH HOH . G 5 HOH A 84 884 60 HOH HOH . G 5 HOH A 85 885 137 HOH HOH . G 5 HOH A 86 886 58 HOH HOH . G 5 HOH A 87 887 5 HOH HOH . G 5 HOH A 88 888 195 HOH HOH . G 5 HOH A 89 889 163 HOH HOH . G 5 HOH A 90 890 33 HOH HOH . G 5 HOH A 91 891 119 HOH HOH . G 5 HOH A 92 892 65 HOH HOH . G 5 HOH A 93 893 127 HOH HOH . G 5 HOH A 94 894 124 HOH HOH . G 5 HOH A 95 895 93 HOH HOH . G 5 HOH A 96 896 135 HOH HOH . G 5 HOH A 97 897 205 HOH HOH . G 5 HOH A 98 898 19 HOH HOH . G 5 HOH A 99 899 31 HOH HOH . G 5 HOH A 100 900 56 HOH HOH . G 5 HOH A 101 901 17 HOH HOH . G 5 HOH A 102 902 102 HOH HOH . G 5 HOH A 103 903 50 HOH HOH . G 5 HOH A 104 904 77 HOH HOH . G 5 HOH A 105 905 81 HOH HOH . G 5 HOH A 106 906 118 HOH HOH . G 5 HOH A 107 907 94 HOH HOH . G 5 HOH A 108 908 175 HOH HOH . G 5 HOH A 109 909 168 HOH HOH . G 5 HOH A 110 910 2 HOH HOH . G 5 HOH A 111 911 87 HOH HOH . G 5 HOH A 112 912 91 HOH HOH . G 5 HOH A 113 913 18 HOH HOH . G 5 HOH A 114 914 98 HOH HOH . G 5 HOH A 115 915 88 HOH HOH . G 5 HOH A 116 916 134 HOH HOH . G 5 HOH A 117 917 138 HOH HOH . G 5 HOH A 118 918 64 HOH HOH . G 5 HOH A 119 919 4 HOH HOH . G 5 HOH A 120 920 169 HOH HOH . G 5 HOH A 121 921 10 HOH HOH . G 5 HOH A 122 922 133 HOH HOH . G 5 HOH A 123 923 61 HOH HOH . G 5 HOH A 124 924 44 HOH HOH . G 5 HOH A 125 925 12 HOH HOH . G 5 HOH A 126 926 74 HOH HOH . G 5 HOH A 127 927 123 HOH HOH . G 5 HOH A 128 928 43 HOH HOH . G 5 HOH A 129 929 126 HOH HOH . G 5 HOH A 130 930 104 HOH HOH . G 5 HOH A 131 931 48 HOH HOH . G 5 HOH A 132 932 83 HOH HOH . G 5 HOH A 133 933 139 HOH HOH . G 5 HOH A 134 934 120 HOH HOH . G 5 HOH A 135 935 174 HOH HOH . G 5 HOH A 136 936 153 HOH HOH . G 5 HOH A 137 937 85 HOH HOH . G 5 HOH A 138 938 170 HOH HOH . G 5 HOH A 139 939 141 HOH HOH . G 5 HOH A 140 940 26 HOH HOH . G 5 HOH A 141 941 95 HOH HOH . G 5 HOH A 142 942 155 HOH HOH . G 5 HOH A 143 943 51 HOH HOH . G 5 HOH A 144 944 76 HOH HOH . G 5 HOH A 145 945 99 HOH HOH . G 5 HOH A 146 946 187 HOH HOH . G 5 HOH A 147 947 125 HOH HOH . G 5 HOH A 148 948 90 HOH HOH . G 5 HOH A 149 949 47 HOH HOH . G 5 HOH A 150 950 29 HOH HOH . G 5 HOH A 151 951 45 HOH HOH . G 5 HOH A 152 952 211 HOH HOH . G 5 HOH A 153 953 68 HOH HOH . G 5 HOH A 154 954 16 HOH HOH . G 5 HOH A 155 955 190 HOH HOH . G 5 HOH A 156 956 34 HOH HOH . G 5 HOH A 157 957 173 HOH HOH . G 5 HOH A 158 958 41 HOH HOH . G 5 HOH A 159 959 114 HOH HOH . G 5 HOH A 160 960 66 HOH HOH . G 5 HOH A 161 961 180 HOH HOH . G 5 HOH A 162 962 117 HOH HOH . G 5 HOH A 163 963 162 HOH HOH . G 5 HOH A 164 964 199 HOH HOH . G 5 HOH A 165 965 92 HOH HOH . G 5 HOH A 166 966 157 HOH HOH . G 5 HOH A 167 967 132 HOH HOH . G 5 HOH A 168 968 209 HOH HOH . G 5 HOH A 169 969 106 HOH HOH . G 5 HOH A 170 970 131 HOH HOH . G 5 HOH A 171 971 140 HOH HOH . G 5 HOH A 172 972 37 HOH HOH . G 5 HOH A 173 973 166 HOH HOH . G 5 HOH A 174 974 158 HOH HOH . G 5 HOH A 175 975 122 HOH HOH . G 5 HOH A 176 976 110 HOH HOH . G 5 HOH A 177 977 75 HOH HOH . G 5 HOH A 178 978 142 HOH HOH . G 5 HOH A 179 979 78 HOH HOH . G 5 HOH A 180 980 184 HOH HOH . G 5 HOH A 181 981 116 HOH HOH . G 5 HOH A 182 982 73 HOH HOH . G 5 HOH A 183 983 182 HOH HOH . G 5 HOH A 184 984 160 HOH HOH . G 5 HOH A 185 985 171 HOH HOH . G 5 HOH A 186 986 210 HOH HOH . G 5 HOH A 187 987 143 HOH HOH . G 5 HOH A 188 988 53 HOH HOH . G 5 HOH A 189 989 212 HOH HOH . G 5 HOH A 190 990 20 HOH HOH . G 5 HOH A 191 991 196 HOH HOH . G 5 HOH A 192 992 214 HOH HOH . G 5 HOH A 193 993 219 HOH HOH . G 5 HOH A 194 994 183 HOH HOH . G 5 HOH A 195 995 218 HOH HOH . G 5 HOH A 196 996 193 HOH HOH . G 5 HOH A 197 997 149 HOH HOH . G 5 HOH A 198 998 130 HOH HOH . G 5 HOH A 199 999 194 HOH HOH . G 5 HOH A 200 1000 203 HOH HOH . G 5 HOH A 201 1001 70 HOH HOH . G 5 HOH A 202 1002 159 HOH HOH . G 5 HOH A 203 1003 179 HOH HOH . G 5 HOH A 204 1004 204 HOH HOH . G 5 HOH A 205 1005 109 HOH HOH . G 5 HOH A 206 1006 191 HOH HOH . G 5 HOH A 207 1007 146 HOH HOH . G 5 HOH A 208 1008 202 HOH HOH . G 5 HOH A 209 1009 128 HOH HOH . G 5 HOH A 210 1010 148 HOH HOH . G 5 HOH A 211 1011 220 HOH HOH . G 5 HOH A 212 1012 201 HOH HOH . G 5 HOH A 213 1013 71 HOH HOH . G 5 HOH A 214 1014 188 HOH HOH . G 5 HOH A 215 1015 185 HOH HOH . G 5 HOH A 216 1016 186 HOH HOH . G 5 HOH A 217 1017 197 HOH HOH . G 5 HOH A 218 1018 84 HOH HOH . G 5 HOH A 219 1019 101 HOH HOH . G 5 HOH A 220 1020 154 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 3.597 _atom_site.Cartn_y -31.487 _atom_site.Cartn_z -2.772 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.14 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 703 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 98 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #