data_9EK8
#
_model_server_result.job_id            0SaXbVB2zH7H4YjpcXi8LQ 
_model_server_result.datetime_utc      '2025-08-31 09:16:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9ek8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"TA","auth_seq_id":304}' 
#
_entry.id    9EK8 
#
_exptl.entry_id    9EK8 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              229.402 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'LAURYL DIMETHYLAMINE-N-OXIDE' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octadecameric 
_pdbx_struct_assembly.oligomeric_count      18 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 U N N 
? 4 AA N N 
? 4 GA N N 
? 4 MA N N 
? 4 TA N N 
? 4 YA N N 
? 4 EB N N 
? 4 KB N N 
? 4 QB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C CXM 1 A CXM 1 1_555 A N ASN 2 A ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 C C CXM 1 C CXM 1 1_555 C N ASN 2 C ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 E C CXM 1 E CXM 1 1_555 E N ASN 2 E ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 G C CXM 1 G CXM 1 1_555 G N ASN 2 G ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale5 I C CXM 1 I CXM 1 1_555 I N ASN 2 I ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale6 K C CXM 1 K CXM 1 1_555 K N ASN 2 K ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale7 M C CXM 1 M CXM 1 1_555 M N ASN 2 M ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale8 O C CXM 1 O CXM 1 1_555 O N ASN 2 O ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale9 Q C CXM 1 Q CXM 1 1_555 Q N ASN 2 Q ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
metalc ? metalc1 A ON2 CXM 1 A CXM 1 1_555 T MG BCL . A BCL 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? 
metalc ? metalc2 A NE2 HIS 31 A HIS 31 1_555 S MG BCL . A BCL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
metalc ? metalc3 B NE2 HIS 30 B HIS 30 1_555 W MG BCL . B BCL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc4 C ON2 CXM 1 C CXM 1 1_555 Z MG BCL . C BCL 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? 
metalc ? metalc5 C NE2 HIS 31 C HIS 31 1_555 Y MG BCL . C BCL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc6 D NE2 HIS 30 D HIS 30 1_555 CA MG BCL . D BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? 
metalc ? metalc7 E ON2 CXM 1 E CXM 1 1_555 FA MG BCL . E BCL 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc8 E NE2 HIS 31 E HIS 31 1_555 EA MG BCL . E BCL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? 
metalc ? metalc9 F NE2 HIS 30 F HIS 30 1_555 IA MG BCL . F BCL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? 
metalc ? metalc10 G ON2 CXM 1 G CXM 1 1_555 LA MG BCL . G BCL 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? 
metalc ? metalc11 G NE2 HIS 31 G HIS 31 1_555 KA MG BCL . G BCL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? 
metalc ? metalc12 H NE2 HIS 30 H HIS 30 1_555 OA MG BCL . H BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc13 I ON2 CXM 1 I CXM 1 1_555 RA MG BCL . I BCL 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? 
metalc ? metalc14 I NE2 HIS 31 I HIS 31 1_555 QA MG BCL . I BCL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? 
metalc ? metalc15 J NE2 HIS 30 J HIS 30 1_555 UA MG BCL . J BCL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? 
metalc ? metalc16 K ON2 CXM 1 K CXM 1 1_555 XA MG BCL . K BCL 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? 
metalc ? metalc17 K NE2 HIS 31 K HIS 31 1_555 WA MG BCL . K BCL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? 
metalc ? metalc18 L NE2 HIS 30 L HIS 30 1_555 AB MG BCL . L BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? 
metalc ? metalc19 M ON2 CXM 1 M CXM 1 1_555 DB MG BCL . M BCL 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? 
metalc ? metalc20 M NE2 HIS 31 M HIS 31 1_555 CB MG BCL . M BCL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? 
metalc ? metalc21 N NE2 HIS 30 N HIS 30 1_555 FB MG BCL . N BCL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? 
metalc ? metalc22 O ON2 CXM 1 O CXM 1 1_555 JB MG BCL . O BCL 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc23 O NE2 HIS 31 O HIS 31 1_555 IB MG BCL . O BCL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
metalc ? metalc24 P NE2 HIS 30 P HIS 30 1_555 LB MG BCL . P BCL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? 
metalc ? metalc25 Q ON2 CXM 1 Q CXM 1 1_555 PB MG BCL . Q BCL 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? 
metalc ? metalc26 Q NE2 HIS 31 Q HIS 31 1_555 OB MG BCL . Q BCL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? 
metalc ? metalc27 R NE2 HIS 30 R HIS 30 1_555 SB MG BCL . R BCL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? 
#
_chem_comp.formula           'C14 H31 N O' 
_chem_comp.formula_weight    229.402 
_chem_comp.id                LDA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'LAURYL DIMETHYLAMINE-N-OXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 O1 LDA sing 426 n n 
N1 CM1 LDA sing 427 n n 
N1 CM2 LDA sing 428 n n 
N1 C1 LDA sing 429 n n 
CM1 HM11 LDA sing 430 n n 
CM1 HM12 LDA sing 431 n n 
CM1 HM13 LDA sing 432 n n 
CM2 HM21 LDA sing 433 n n 
CM2 HM22 LDA sing 434 n n 
CM2 HM23 LDA sing 435 n n 
C1 C2 LDA sing 436 n n 
C1 H11 LDA sing 437 n n 
C1 H12 LDA sing 438 n n 
C2 C3 LDA sing 439 n n 
C2 H21 LDA sing 440 n n 
C2 H22 LDA sing 441 n n 
C3 C4 LDA sing 442 n n 
C3 H31 LDA sing 443 n n 
C3 H32 LDA sing 444 n n 
C4 C5 LDA sing 445 n n 
C4 H41 LDA sing 446 n n 
C4 H42 LDA sing 447 n n 
C5 C6 LDA sing 448 n n 
C5 H51 LDA sing 449 n n 
C5 H52 LDA sing 450 n n 
C6 C7 LDA sing 451 n n 
C6 H61 LDA sing 452 n n 
C6 H62 LDA sing 453 n n 
C7 C8 LDA sing 454 n n 
C7 H71 LDA sing 455 n n 
C7 H72 LDA sing 456 n n 
C8 C9 LDA sing 457 n n 
C8 H81 LDA sing 458 n n 
C8 H82 LDA sing 459 n n 
C9 C10 LDA sing 460 n n 
C9 H91 LDA sing 461 n n 
C9 H92 LDA sing 462 n n 
C10 C11 LDA sing 463 n n 
C10 H101 LDA sing 464 n n 
C10 H102 LDA sing 465 n n 
C11 C12 LDA sing 466 n n 
C11 H111 LDA sing 467 n n 
C11 H112 LDA sing 468 n n 
C12 H121 LDA sing 469 n n 
C12 H122 LDA sing 470 n n 
C12 H123 LDA sing 471 n n 
#
_atom_sites.entry_id                     9EK8 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 3 BCL A 1 301 301 BCL BCL . 
T 3 BCL A 1 302 307 BCL BCL . 
U 4 LDA A 1 303 308 LDA LDA . 
V 5 LMT A 1 304 402 LMT LMT . 
W 3 BCL B 1 101 302 BCL BCL . 
X 6 IRM B 1 102 401 IRM IRM . 
Y 3 BCL C 1 301 301 BCL BCL . 
Z 3 BCL C 1 302 307 BCL BCL . 
AA 4 LDA C 1 303 309 LDA LDA . 
BA 5 LMT D 1 101 308 LMT LMT . 
CA 3 BCL D 1 102 302 BCL BCL . 
DA 6 IRM D 1 103 401 IRM IRM . 
EA 3 BCL E 1 301 301 BCL BCL . 
FA 3 BCL E 1 302 307 BCL BCL . 
GA 4 LDA E 1 303 308 LDA LDA . 
HA 6 IRM E 1 304 401 IRM IRM . 
IA 3 BCL F 1 101 302 BCL BCL . 
JA 5 LMT F 1 102 402 LMT LMT . 
KA 3 BCL G 1 301 301 BCL BCL . 
LA 3 BCL G 1 302 307 BCL BCL . 
MA 4 LDA G 1 303 309 LDA LDA . 
NA 5 LMT H 1 101 308 LMT LMT . 
OA 3 BCL H 1 102 302 BCL BCL . 
PA 6 IRM H 1 103 401 IRM IRM . 
QA 3 BCL I 1 301 301 BCL BCL . 
RA 3 BCL I 1 302 307 BCL BCL . 
SA 5 LMT I 1 303 308 LMT LMT . 
TA 4 LDA I 1 304 309 LDA LDA . 
UA 3 BCL J 1 101 302 BCL BCL . 
VA 6 IRM J 1 102 401 IRM IRM . 
WA 3 BCL K 1 301 301 BCL BCL . 
XA 3 BCL K 1 302 307 BCL BCL . 
YA 4 LDA K 1 303 309 LDA LDA . 
ZA 5 LMT L 1 101 308 LMT LMT . 
AB 3 BCL L 1 102 302 BCL BCL . 
BB 6 IRM L 1 103 401 IRM IRM . 
CB 3 BCL M 1 301 301 BCL BCL . 
DB 3 BCL M 1 302 307 BCL BCL . 
EB 4 LDA M 1 303 308 LDA LDA . 
FB 3 BCL N 1 101 302 BCL BCL . 
GB 6 IRM N 1 102 401 IRM IRM . 
HB 5 LMT N 1 103 402 LMT LMT . 
IB 3 BCL O 1 301 301 BCL BCL . 
JB 3 BCL O 1 302 307 BCL BCL . 
KB 4 LDA O 1 303 308 LDA LDA . 
LB 3 BCL P 1 101 302 BCL BCL . 
MB 6 IRM P 1 102 401 IRM IRM . 
NB 5 LMT P 1 103 402 LMT LMT . 
OB 3 BCL Q 1 301 301 BCL BCL . 
PB 3 BCL Q 1 302 307 BCL BCL . 
QB 4 LDA Q 1 303 309 LDA LDA . 
RB 5 LMT R 1 101 308 LMT LMT . 
SB 3 BCL R 1 102 302 BCL BCL . 
TB 6 IRM R 1 103 401 IRM IRM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 LDA . . . TA 4 119.5 114.264 104.381 1 43.39 ? N1 LDA 304 I 1 
HETATM 2 O O1 LDA . . . TA 4 119.687 112.959 104.029 1 43.39 ? O1 LDA 304 I 1 
HETATM 3 C CM1 LDA . . . TA 4 118.687 114.968 103.303 1 43.39 ? CM1 LDA 304 I 1 
HETATM 4 C CM2 LDA . . . TA 4 120.845 114.977 104.497 1 43.39 ? CM2 LDA 304 I 1 
HETATM 5 C C1 LDA . . . TA 4 118.73 114.379 105.699 1 43.39 ? C1 LDA 304 I 1 
HETATM 6 C C2 LDA . . . TA 4 119.37 113.712 106.937 1 43.39 ? C2 LDA 304 I 1 
HETATM 7 C C3 LDA . . . TA 4 118.586 114.091 108.207 1 43.39 ? C3 LDA 304 I 1 
HETATM 8 C C4 LDA . . . TA 4 119.179 113.526 109.513 1 43.39 ? C4 LDA 304 I 1 
HETATM 9 C C5 LDA . . . TA 4 118.184 113.712 110.678 1 43.39 ? C5 LDA 304 I 1 
HETATM 10 C C6 LDA . . . TA 4 118.76 113.31 112.051 1 43.39 ? C6 LDA 304 I 1 
HETATM 11 C C7 LDA . . . TA 4 117.631 113.199 113.095 1 43.39 ? C7 LDA 304 I 1 
HETATM 12 C C8 LDA . . . TA 4 118.094 113.415 114.55 1 43.39 ? C8 LDA 304 I 1 
HETATM 13 C C9 LDA . . . TA 4 116.881 113.498 115.509 1 43.39 ? C9 LDA 304 I 1 
HETATM 14 C C10 LDA . . . TA 4 117.255 114.08 116.888 1 43.39 ? C10 LDA 304 I 1 
HETATM 15 C C11 LDA . . . TA 4 116.042 114.155 117.844 1 43.39 ? C11 LDA 304 I 1 
HETATM 16 C C12 LDA . . . TA 4 116.248 115.184 118.973 1 43.39 ? C12 LDA 304 I 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           16 
#