data_9ELA
#
_model_server_result.job_id            Pn4-7-NEwex_xTrfc1pwVA 
_model_server_result.datetime_utc      '2025-07-17 17:01:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9ela 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1701}' 
#
_entry.id    9ELA 
#
_exptl.entry_id    9ELA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              1038.846 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl (2R,3S,4S)-2,3,4-trihydroxy-5-[(1R,3R,3aS,13R)-1-hydroxy-10,11-dimethyl-4,6-dioxo-3-[3-(phenylcarbamoyl)phenyl]-2,3,5,6-tetrahydro-1H-benzo[g]pyrrolo[2,1-e]pteridin-8(4H)-yl]pentyl dihydrogen diphosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9ELA 
_cell.length_a            119.538 
_cell.length_b            179.135 
_cell.length_c            234.797 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9ELA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C43 H48 N10 O17 P2' 
_chem_comp.formula_weight    1038.846 
_chem_comp.id                XZQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl (2R,3S,4S)-2,3,4-trihydroxy-5-[(1R,3R,3aS,13R)-1-hydroxy-10,11-dimethyl-4,6-dioxo-3-[3-(phenylcarbamoyl)phenyl]-2,3,5,6-tetrahydro-1H-benzo[g]pyrrolo[2,1-e]pteridin-8(4H)-yl]pentyl dihydrogen diphosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C22 C21 XZQ doub 374 n y 
C22 C23 XZQ sing 375 n y 
C8 C7 XZQ sing 376 n n 
C21 C20 XZQ sing 377 n y 
C23 C18 XZQ doub 378 n y 
O2 C17 XZQ doub 379 n n 
C7 C6 XZQ doub 380 n y 
C7 C2 XZQ sing 381 n y 
O1 C9 XZQ sing 382 n n 
C20 C19 XZQ doub 383 n y 
C6 C5 XZQ sing 384 n y 
C9 C10 XZQ sing 385 n n 
C9 N1 XZQ sing 386 n n 
C18 C19 XZQ sing 387 n y 
C18 N2 XZQ sing 388 n n 
C10 C11 XZQ sing 389 n n 
C17 N2 XZQ sing 390 n n 
C17 C16 XZQ sing 391 n n 
C1 C2 XZQ sing 392 n n 
C2 C3 XZQ doub 393 n y 
C5 N1 XZQ sing 394 n n 
C5 C4 XZQ doub 395 n y 
N1 C25 XZQ sing 396 n n 
C24 C16 XZQ doub 397 n y 
C24 C12 XZQ sing 398 n y 
O3 C26 XZQ doub 399 n n 
C16 C15 XZQ sing 400 n y 
C11 C25 XZQ sing 401 n n 
C11 C12 XZQ sing 402 n n 
C3 C4 XZQ sing 403 n y 
C4 N5 XZQ sing 404 n n 
C25 C26 XZQ sing 405 n n 
C25 C28 XZQ sing 406 n n 
C12 C13 XZQ doub 407 n y 
C26 N3 XZQ sing 408 n n 
C15 C14 XZQ doub 409 n y 
N5 C28 XZQ sing 410 n n 
N5 C29 XZQ sing 411 n n 
C28 N4 XZQ doub 412 n n 
C13 C14 XZQ sing 413 n y 
N3 C27 XZQ sing 414 n n 
O5 C30 XZQ sing 415 n n 
N4 C27 XZQ sing 416 n n 
C29 C30 XZQ sing 417 n n 
C27 O4 XZQ doub 418 n n 
C30 C31 XZQ sing 419 n n 
O16 C42 XZQ sing 420 n n 
C31 O6 XZQ sing 421 n n 
C31 C32 XZQ sing 422 n n 
C42 C43 XZQ sing 423 n n 
C42 C36 XZQ sing 424 n n 
O12 P2 XZQ doub 425 n n 
O7 C32 XZQ sing 426 n n 
C43 O17 XZQ sing 427 n n 
C43 C35 XZQ sing 428 n n 
C37 N7 XZQ doub 429 n y 
C37 N6 XZQ sing 430 n y 
N7 C38 XZQ sing 431 n y 
O13 P2 XZQ sing 432 n n 
C32 C33 XZQ sing 433 n n 
P2 O14 XZQ sing 434 n n 
P2 O11 XZQ sing 435 n n 
N6 C36 XZQ sing 436 n n 
N6 C41 XZQ sing 437 n y 
C36 O15 XZQ sing 438 n n 
C38 C41 XZQ doub 439 n y 
C38 C39 XZQ sing 440 n y 
C33 O8 XZQ sing 441 n n 
N8 C39 XZQ sing 442 n n 
C41 N10 XZQ sing 443 n y 
C35 C34 XZQ sing 444 n n 
C35 O15 XZQ sing 445 n n 
C34 O14 XZQ sing 446 n n 
C39 N9 XZQ doub 447 n y 
O8 P1 XZQ sing 448 n n 
O11 P1 XZQ sing 449 n n 
N10 C40 XZQ doub 450 n y 
N9 C40 XZQ sing 451 n y 
P1 O10 XZQ doub 452 n n 
P1 O9 XZQ sing 453 n n 
N2 H1 XZQ sing 454 n n 
C3 H2 XZQ sing 455 n n 
C6 H3 XZQ sing 456 n n 
C8 H4 XZQ sing 457 n n 
C8 H5 XZQ sing 458 n n 
C8 H6 XZQ sing 459 n n 
C9 H7 XZQ sing 460 n n 
C10 H8 XZQ sing 461 n n 
C10 H9 XZQ sing 462 n n 
C11 H10 XZQ sing 463 n n 
C15 H11 XZQ sing 464 n n 
C19 H12 XZQ sing 465 n n 
C20 H13 XZQ sing 466 n n 
C21 H14 XZQ sing 467 n n 
C22 H15 XZQ sing 468 n n 
C23 H16 XZQ sing 469 n n 
C24 H17 XZQ sing 470 n n 
C29 H19 XZQ sing 471 n n 
C29 H20 XZQ sing 472 n n 
C30 H21 XZQ sing 473 n n 
C31 H22 XZQ sing 474 n n 
C32 H23 XZQ sing 475 n n 
C33 H24 XZQ sing 476 n n 
C33 H25 XZQ sing 477 n n 
C34 H26 XZQ sing 478 n n 
C34 H27 XZQ sing 479 n n 
C35 H28 XZQ sing 480 n n 
C36 H29 XZQ sing 481 n n 
C40 H30 XZQ sing 482 n n 
C42 H31 XZQ sing 483 n n 
C43 H32 XZQ sing 484 n n 
C1 H33 XZQ sing 485 n n 
C1 H34 XZQ sing 486 n n 
C1 H35 XZQ sing 487 n n 
O1 H36 XZQ sing 488 n n 
C13 H37 XZQ sing 489 n n 
C14 H38 XZQ sing 490 n n 
N3 H39 XZQ sing 491 n n 
O5 H41 XZQ sing 492 n n 
O6 H42 XZQ sing 493 n n 
O7 H43 XZQ sing 494 n n 
O9 H44 XZQ sing 495 n n 
O13 H45 XZQ sing 496 n n 
C37 H46 XZQ sing 497 n n 
N8 H47 XZQ sing 498 n n 
N8 H48 XZQ sing 499 n n 
O16 H49 XZQ sing 500 n n 
O17 H50 XZQ sing 501 n n 
#
_atom_sites.entry_id                     9ELA 
_atom_sites.fract_transf_matrix[1][1]    0.008366 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005582 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004259 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           XZQ 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      1701 
_pdbx_nonpoly_scheme.auth_seq_num     1701 
_pdbx_nonpoly_scheme.pdb_mon_id       XZQ 
_pdbx_nonpoly_scheme.auth_mon_id      DRB 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N2 XZQ . . . C 3 -2.5 54.453 85.273 1 72.37 ? N2 XZQ 1701 A 1 
HETATM 2 C C3 XZQ . . . C 3 -6.293 61.572 82.742 1 57.53 ? C3 XZQ 1701 A 1 
HETATM 3 C C4 XZQ . . . C 3 -6.816 60.296 82.88 1 59.28 ? C4 XZQ 1701 A 1 
HETATM 4 C C5 XZQ . . . C 3 -7.237 59.623 81.764 1 56.19 ? C5 XZQ 1701 A 1 
HETATM 5 C C6 XZQ . . . C 3 -7.141 60.176 80.512 1 52.99 ? C6 XZQ 1701 A 1 
HETATM 6 C C7 XZQ . . . C 3 -6.626 61.426 80.356 1 58.68 ? C7 XZQ 1701 A 1 
HETATM 7 C C8 XZQ . . . C 3 -6.518 62.032 78.992 1 53.86 ? C8 XZQ 1701 A 1 
HETATM 8 C C9 XZQ . . . C 3 -7.454 57.561 80.68 1 62.72 ? C9 XZQ 1701 A 1 
HETATM 9 C C10 XZQ . . . C 3 -6.648 56.405 81.226 1 56.49 ? C10 XZQ 1701 A 1 
HETATM 10 C C11 XZQ . . . C 3 -6.531 56.66 82.716 1 70.07 ? C11 XZQ 1701 A 1 
HETATM 11 C C12 XZQ . . . C 3 -6.273 55.41 83.515 1 70.32 ? C12 XZQ 1701 A 1 
HETATM 12 C C15 XZQ . . . C 3 -5.837 53.085 84.942 1 84.89 ? C15 XZQ 1701 A 1 
HETATM 13 C C16 XZQ . . . C 3 -4.833 54.029 84.844 1 80.8 ? C16 XZQ 1701 A 1 
HETATM 14 C C17 XZQ . . . C 3 -3.568 53.707 85.557 1 77.61 ? C17 XZQ 1701 A 1 
HETATM 15 C C18 XZQ . . . C 3 -1.22 54.324 85.845 1 76.09 ? C18 XZQ 1701 A 1 
HETATM 16 C C19 XZQ . . . C 3 -0.126 54.919 85.25 1 70.51 ? C19 XZQ 1701 A 1 
HETATM 17 C C20 XZQ . . . C 3 1.125 54.797 85.82 1 75.8 ? C20 XZQ 1701 A 1 
HETATM 18 C C21 XZQ . . . C 3 1.293 54.095 86.98 1 72.69 ? C21 XZQ 1701 A 1 
HETATM 19 C C22 XZQ . . . C 3 0.211 53.501 87.568 1 72.1 ? C22 XZQ 1701 A 1 
HETATM 20 C C23 XZQ . . . C 3 -1.045 53.606 87.007 1 74.08 ? C23 XZQ 1701 A 1 
HETATM 21 C C24 XZQ . . . C 3 -5.053 55.193 84.13 1 74.75 ? C24 XZQ 1701 A 1 
HETATM 22 C C27 XZQ . . . C 3 -8.846 57.197 85.477 1 63.3 ? C27 XZQ 1701 A 1 
HETATM 23 C C28 XZQ . . . C 3 -7.558 58.503 84.248 1 57.34 ? C28 XZQ 1701 A 1 
HETATM 24 C C29 XZQ . . . C 3 -6.381 60.332 85.333 1 53.09 ? C29 XZQ 1701 A 1 
HETATM 25 C C30 XZQ . . . C 3 -7.338 61.145 86.15 1 52.68 ? C30 XZQ 1701 A 1 
HETATM 26 C C31 XZQ . . . C 3 -6.549 62.078 87.059 1 55.7 ? C31 XZQ 1701 A 1 
HETATM 27 C C32 XZQ . . . C 3 -7.324 62.76 88.17 1 53.11 ? C32 XZQ 1701 A 1 
HETATM 28 C C33 XZQ . . . C 3 -6.464 63.741 88.919 1 54.27 ? C33 XZQ 1701 A 1 
HETATM 29 C C34 XZQ . . . C 3 -5.975 69.9 89.434 1 43.45 ? C34 XZQ 1701 A 1 
HETATM 30 C C35 XZQ . . . C 3 -6.668 71.216 89.311 1 44.67 ? C35 XZQ 1701 A 1 
HETATM 31 C C36 XZQ . . . C 3 -6.085 73.328 88.739 1 53.54 ? C36 XZQ 1701 A 1 
HETATM 32 C C38 XZQ . . . C 3 -3.619 75.897 88.893 1 45.39 ? C38 XZQ 1701 A 1 
HETATM 33 C C39 XZQ . . . C 3 -3.285 77.173 89.341 1 43.87 ? C39 XZQ 1701 A 1 
HETATM 34 C C40 XZQ . . . C 3 -5.368 77.259 90.296 1 48.26 ? C40 XZQ 1701 A 1 
HETATM 35 C C41 XZQ . . . C 3 -4.866 75.441 89.212 1 39.6 ? C41 XZQ 1701 A 1 
HETATM 36 C C42 XZQ . . . C 3 -6.458 72.685 87.429 1 53.16 ? C42 XZQ 1701 A 1 
HETATM 37 C C43 XZQ . . . C 3 -7.248 71.492 87.932 1 47.51 ? C43 XZQ 1701 A 1 
HETATM 38 C C1 XZQ . . . C 3 -5.626 63.519 81.35 1 49.03 ? C1 XZQ 1701 A 1 
HETATM 39 C C2 XZQ . . . C 3 -6.191 62.144 81.506 1 58.74 ? C2 XZQ 1701 A 1 
HETATM 40 N N1 XZQ . . . C 3 -7.769 58.383 81.82 1 65.02 ? N1 XZQ 1701 A 1 
HETATM 41 O O1 XZQ . . . C 3 -8.608 57.085 80.094 1 62.57 ? O1 XZQ 1701 A 1 
HETATM 42 C C13 XZQ . . . C 3 -7.261 54.454 83.615 1 74.85 ? C13 XZQ 1701 A 1 
HETATM 43 C C14 XZQ . . . C 3 -7.05 53.298 84.334 1 79.59 ? C14 XZQ 1701 A 1 
HETATM 44 O O2 XZQ . . . C 3 -3.538 52.794 86.357 1 89.77 ? O2 XZQ 1701 A 1 
HETATM 45 C C25 XZQ . . . C 3 -7.716 57.613 83.047 1 68.23 ? C25 XZQ 1701 A 1 
HETATM 46 C C26 XZQ . . . C 3 -9.059 56.958 83.189 1 62.28 ? C26 XZQ 1701 A 1 
HETATM 47 O O3 XZQ . . . C 3 -9.784 56.758 82.249 1 59.96 ? O3 XZQ 1701 A 1 
HETATM 48 N N3 XZQ . . . C 3 -9.438 56.647 84.406 1 63.38 ? N3 XZQ 1701 A 1 
HETATM 49 O O4 XZQ . . . C 3 -9.12 56.762 86.556 1 55.55 ? O4 XZQ 1701 A 1 
HETATM 50 N N4 XZQ . . . C 3 -8.009 58.173 85.396 1 60.17 ? N4 XZQ 1701 A 1 
HETATM 51 N N5 XZQ . . . C 3 -6.952 59.683 84.136 1 57.67 ? N5 XZQ 1701 A 1 
HETATM 52 O O5 XZQ . . . C 3 -8.016 61.965 85.303 1 54.51 ? O5 XZQ 1701 A 1 
HETATM 53 O O6 XZQ . . . C 3 -5.558 61.358 87.673 1 56.05 ? O6 XZQ 1701 A 1 
HETATM 54 O O7 XZQ . . . C 3 -8.41 63.456 87.59 1 55.92 ? O7 XZQ 1701 A 1 
HETATM 55 O O8 XZQ . . . C 3 -7.194 64.753 89.625 1 55.07 ? O8 XZQ 1701 A 1 
HETATM 56 P P1 XZQ . . . C 3 -6.422 65.683 90.601 1 47.69 ? P1 XZQ 1701 A 1 
HETATM 57 O O9 XZQ . . . C 3 -7.338 66.155 91.626 1 55.78 ? O9 XZQ 1701 A 1 
HETATM 58 O O10 XZQ . . . C 3 -5.213 65.003 91.015 1 47.68 -1 O10 XZQ 1701 A 1 
HETATM 59 O O11 XZQ . . . C 3 -5.965 66.823 89.642 1 46.47 ? O11 XZQ 1701 A 1 
HETATM 60 P P2 XZQ . . . C 3 -6.646 67.682 88.541 1 47.97 ? P2 XZQ 1701 A 1 
HETATM 61 O O12 XZQ . . . C 3 -5.681 68.061 87.536 1 41.71 ? O12 XZQ 1701 A 1 
HETATM 62 O O13 XZQ . . . C 3 -7.886 67.025 88.196 1 49.64 -1 O13 XZQ 1701 A 1 
HETATM 63 O O14 XZQ . . . C 3 -6.978 68.919 89.382 1 53.89 ? O14 XZQ 1701 A 1 
HETATM 64 O O15 XZQ . . . C 3 -5.703 72.249 89.522 1 49.53 ? O15 XZQ 1701 A 1 
HETATM 65 N N6 XZQ . . . C 3 -4.954 74.214 88.655 1 43.04 ? N6 XZQ 1701 A 1 
HETATM 66 C C37 XZQ . . . C 3 -3.767 73.985 88.043 1 48.03 ? C37 XZQ 1701 A 1 
HETATM 67 N N7 XZQ . . . C 3 -2.934 74.97 88.148 1 46.12 ? N7 XZQ 1701 A 1 
HETATM 68 N N8 XZQ . . . C 3 -2.123 77.748 89.117 1 38.22 ? N8 XZQ 1701 A 1 
HETATM 69 N N9 XZQ . . . C 3 -4.192 77.832 90.069 1 42.12 ? N9 XZQ 1701 A 1 
HETATM 70 N N10 XZQ . . . C 3 -5.799 76.075 89.916 1 51.33 ? N10 XZQ 1701 A 1 
HETATM 71 O O16 XZQ . . . C 3 -7.258 73.541 86.667 1 49.85 ? O16 XZQ 1701 A 1 
HETATM 72 O O17 XZQ . . . C 3 -8.619 71.779 88.059 1 51.33 ? O17 XZQ 1701 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           232 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           72 
#