data_9EM0
#
_model_server_result.job_id            O1hmEbJujEZG9dZC_BiwZA 
_model_server_result.datetime_utc      '2024-10-14 04:20:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9em0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    9EM0 
#
_exptl.entry_id    9EM0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.171 
_cell.angle_gamma         90 
_cell.entry_id            9EM0 
_cell.length_a            57.695 
_cell.length_b            89.659 
_cell.length_c            80.148 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9EM0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 120 n n 
N1 C10 FMN doub 121 n n 
C2 O2 FMN doub 122 n n 
C2 N3 FMN sing 123 n n 
N3 C4 FMN sing 124 n n 
N3 HN3 FMN sing 125 n n 
C4 O4 FMN doub 126 n n 
C4 C4A FMN sing 127 n n 
C4A N5 FMN doub 128 n n 
C4A C10 FMN sing 129 n n 
N5 C5A FMN sing 130 n n 
C5A C6 FMN doub 131 n y 
C5A C9A FMN sing 132 n y 
C6 C7 FMN sing 133 n y 
C6 H6 FMN sing 134 n n 
C7 C7M FMN sing 135 n n 
C7 C8 FMN doub 136 n y 
C7M HM71 FMN sing 137 n n 
C7M HM72 FMN sing 138 n n 
C7M HM73 FMN sing 139 n n 
C8 C8M FMN sing 140 n n 
C8 C9 FMN sing 141 n y 
C8M HM81 FMN sing 142 n n 
C8M HM82 FMN sing 143 n n 
C8M HM83 FMN sing 144 n n 
C9 C9A FMN doub 145 n y 
C9 H9 FMN sing 146 n n 
C9A N10 FMN sing 147 n n 
N10 C10 FMN sing 148 n n 
N10 C1' FMN sing 149 n n 
C1' C2' FMN sing 150 n n 
C1' "H1'1" FMN sing 151 n n 
C1' "H1'2" FMN sing 152 n n 
C2' O2' FMN sing 153 n n 
C2' C3' FMN sing 154 n n 
C2' H2' FMN sing 155 n n 
O2' HO2' FMN sing 156 n n 
C3' O3' FMN sing 157 n n 
C3' C4' FMN sing 158 n n 
C3' H3' FMN sing 159 n n 
O3' HO3' FMN sing 160 n n 
C4' O4' FMN sing 161 n n 
C4' C5' FMN sing 162 n n 
C4' H4' FMN sing 163 n n 
O4' HO4' FMN sing 164 n n 
C5' O5' FMN sing 165 n n 
C5' "H5'1" FMN sing 166 n n 
C5' "H5'2" FMN sing 167 n n 
O5' P FMN sing 168 n n 
P O1P FMN doub 169 n n 
P O2P FMN sing 170 n n 
P O3P FMN sing 171 n n 
O2P HOP2 FMN sing 172 n n 
O3P HOP3 FMN sing 173 n n 
#
_atom_sites.entry_id                     9EM0 
_atom_sites.fract_transf_matrix[1][1]    0.017333 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004376 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011153 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012869 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FMN A 1 401 401 FMN FMN . 
D 3 1PE A 1 402 402 1PE 1PE . 
E 2 FMN B 1 401 401 FMN FMN . 
F 4 HOH A 1 501 47 HOH HOH . 
F 4 HOH A 2 502 14 HOH HOH . 
F 4 HOH A 3 503 61 HOH HOH . 
F 4 HOH A 4 504 20 HOH HOH . 
F 4 HOH A 5 505 63 HOH HOH . 
F 4 HOH A 6 506 60 HOH HOH . 
F 4 HOH A 7 507 49 HOH HOH . 
F 4 HOH A 8 508 4 HOH HOH . 
F 4 HOH A 9 509 45 HOH HOH . 
F 4 HOH A 10 510 23 HOH HOH . 
F 4 HOH A 11 511 11 HOH HOH . 
F 4 HOH A 12 512 7 HOH HOH . 
F 4 HOH A 13 513 52 HOH HOH . 
F 4 HOH A 14 514 27 HOH HOH . 
F 4 HOH A 15 515 8 HOH HOH . 
F 4 HOH A 16 516 36 HOH HOH . 
F 4 HOH A 17 517 44 HOH HOH . 
F 4 HOH A 18 518 35 HOH HOH . 
F 4 HOH A 19 519 34 HOH HOH . 
F 4 HOH A 20 520 62 HOH HOH . 
F 4 HOH A 21 521 33 HOH HOH . 
F 4 HOH A 22 522 24 HOH HOH . 
F 4 HOH A 23 523 32 HOH HOH . 
F 4 HOH A 24 524 50 HOH HOH . 
F 4 HOH A 25 525 22 HOH HOH . 
F 4 HOH A 26 526 25 HOH HOH . 
F 4 HOH A 27 527 30 HOH HOH . 
F 4 HOH A 28 528 5 HOH HOH . 
F 4 HOH A 29 529 37 HOH HOH . 
F 4 HOH A 30 530 31 HOH HOH . 
F 4 HOH A 31 531 19 HOH HOH . 
F 4 HOH A 32 532 9 HOH HOH . 
F 4 HOH A 33 533 28 HOH HOH . 
F 4 HOH A 34 534 10 HOH HOH . 
F 4 HOH A 35 535 42 HOH HOH . 
F 4 HOH A 36 536 1 HOH HOH . 
F 4 HOH A 37 537 16 HOH HOH . 
F 4 HOH A 38 538 40 HOH HOH . 
F 4 HOH A 39 539 41 HOH HOH . 
F 4 HOH A 40 540 15 HOH HOH . 
F 4 HOH A 41 541 18 HOH HOH . 
F 4 HOH A 42 542 46 HOH HOH . 
F 4 HOH A 43 543 26 HOH HOH . 
F 4 HOH A 44 544 43 HOH HOH . 
F 4 HOH A 45 545 48 HOH HOH . 
F 4 HOH A 46 546 53 HOH HOH . 
F 4 HOH A 47 547 21 HOH HOH . 
F 4 HOH A 48 548 6 HOH HOH . 
F 4 HOH A 49 549 29 HOH HOH . 
F 4 HOH A 50 550 51 HOH HOH . 
F 4 HOH A 51 551 3 HOH HOH . 
F 4 HOH A 52 552 17 HOH HOH . 
G 4 HOH B 1 501 58 HOH HOH . 
G 4 HOH B 2 502 2 HOH HOH . 
G 4 HOH B 3 503 57 HOH HOH . 
G 4 HOH B 4 504 54 HOH HOH . 
G 4 HOH B 5 505 55 HOH HOH . 
G 4 HOH B 6 506 59 HOH HOH . 
G 4 HOH B 7 507 39 HOH HOH . 
G 4 HOH B 8 508 56 HOH HOH . 
G 4 HOH B 9 509 38 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . E 2 5.927 4.95 68.588 1 37.46 ? N1 FMN 401 B 1 
HETATM 2 C C2 FMN . . . E 2 6.447 5.639 69.667 1 34.65 ? C2 FMN 401 B 1 
HETATM 3 O O2 FMN . . . E 2 7.233 5.082 70.43 1 25.6 ? O2 FMN 401 B 1 
HETATM 4 N N3 FMN . . . E 2 6.091 6.954 69.89 1 32.22 ? N3 FMN 401 B 1 
HETATM 5 C C4 FMN . . . E 2 5.209 7.583 69.036 1 34.2 ? C4 FMN 401 B 1 
HETATM 6 O O4 FMN . . . E 2 4.897 8.755 69.243 1 34.08 ? O4 FMN 401 B 1 
HETATM 7 C C4A FMN . . . E 2 4.682 6.893 67.947 1 42.8 ? C4A FMN 401 B 1 
HETATM 8 N N5 FMN . . . E 2 3.802 7.515 67.084 1 30.44 ? N5 FMN 401 B 1 
HETATM 9 C C5A FMN . . . E 2 3.279 6.825 66.007 1 35.66 ? C5A FMN 401 B 1 
HETATM 10 C C6 FMN . . . E 2 2.389 7.458 65.146 1 31.54 ? C6 FMN 401 B 1 
HETATM 11 C C7 FMN . . . E 2 1.858 6.773 64.06 1 35.16 ? C7 FMN 401 B 1 
HETATM 12 C C7M FMN . . . E 2 0.899 7.464 63.134 1 26.7 ? C7M FMN 401 B 1 
HETATM 13 C C8 FMN . . . E 2 2.215 5.448 63.837 1 36.61 ? C8 FMN 401 B 1 
HETATM 14 C C8M FMN . . . E 2 1.648 4.697 62.668 1 28.25 ? C8M FMN 401 B 1 
HETATM 15 C C9 FMN . . . E 2 3.105 4.816 64.698 1 32.26 ? C9 FMN 401 B 1 
HETATM 16 C C9A FMN . . . E 2 3.638 5.499 65.787 1 36.47 ? C9A FMN 401 B 1 
HETATM 17 N N10 FMN . . . E 2 4.521 4.872 66.65 1 36.14 ? N10 FMN 401 B 1 
HETATM 18 C C10 FMN . . . E 2 5.047 5.569 67.723 1 36.48 ? C10 FMN 401 B 1 
HETATM 19 C C1' FMN . . . E 2 4.922 3.442 66.42 1 30.65 ? C1' FMN 401 B 1 
HETATM 20 C C2' FMN . . . E 2 3.921 2.494 67.077 1 38.63 ? C2' FMN 401 B 1 
HETATM 21 O O2' FMN . . . E 2 4.119 2.494 68.475 1 43.19 ? O2' FMN 401 B 1 
HETATM 22 C C3' FMN . . . E 2 4.058 1.08 66.514 1 38.91 ? C3' FMN 401 B 1 
HETATM 23 O O3' FMN . . . E 2 5.324 0.549 66.845 1 42.69 ? O3' FMN 401 B 1 
HETATM 24 C C4' FMN . . . E 2 3.879 1.11 64.996 1 34.25 ? C4' FMN 401 B 1 
HETATM 25 O O4' FMN . . . E 2 2.572 1.535 64.679 1 41.45 ? O4' FMN 401 B 1 
HETATM 26 C C5' FMN . . . E 2 4.131 -0.234 64.32 1 42.61 ? C5' FMN 401 B 1 
HETATM 27 O O5' FMN . . . E 2 3.136 -1.169 64.672 1 36.37 ? O5' FMN 401 B 1 
HETATM 28 P P FMN . . . E 2 2.064 -1.643 63.567 1 33.73 ? P FMN 401 B 1 
HETATM 29 O O1P FMN . . . E 2 1.687 -0.435 62.744 1 42.58 ? O1P FMN 401 B 1 
HETATM 30 O O2P FMN . . . E 2 2.699 -2.678 62.67 1 37.48 ? O2P FMN 401 B 1 
HETATM 31 O O3P FMN . . . E 2 0.834 -2.227 64.222 1 40.14 ? O3P FMN 401 B 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#