data_9EM4 # _model_server_result.job_id 7zkVp3e5kfWwiC7rmQdhLw _model_server_result.datetime_utc '2024-11-29 15:21:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9em4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 9EM4 # _exptl.entry_id 9EM4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.01 _cell.angle_gamma 90 _cell.entry_id 9EM4 _cell.length_a 57.531 _cell.length_b 89.64 _cell.length_c 80.943 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9EM4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 9EM4 _atom_sites.fract_transf_matrix[1][1] 0.017382 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005988 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011156 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013067 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN B 1 401 401 FMN FMN . D 2 FMN A 1 401 401 FMN FMN . E 3 SO4 A 1 402 402 SO4 SO4 . F 4 MES A 1 403 403 MES MES . G 5 HOH B 1 501 100 HOH HOH . G 5 HOH B 2 502 89 HOH HOH . G 5 HOH B 3 503 99 HOH HOH . G 5 HOH B 4 504 66 HOH HOH . G 5 HOH B 5 505 67 HOH HOH . G 5 HOH B 6 506 85 HOH HOH . G 5 HOH B 7 507 87 HOH HOH . G 5 HOH B 8 508 55 HOH HOH . G 5 HOH B 9 509 86 HOH HOH . G 5 HOH B 10 510 76 HOH HOH . G 5 HOH B 11 511 39 HOH HOH . G 5 HOH B 12 512 92 HOH HOH . G 5 HOH B 13 513 94 HOH HOH . G 5 HOH B 14 514 98 HOH HOH . G 5 HOH B 15 515 54 HOH HOH . G 5 HOH B 16 516 84 HOH HOH . G 5 HOH B 17 517 91 HOH HOH . G 5 HOH B 18 518 93 HOH HOH . G 5 HOH B 19 519 83 HOH HOH . G 5 HOH B 20 520 95 HOH HOH . G 5 HOH B 21 521 90 HOH HOH . G 5 HOH B 22 522 53 HOH HOH . G 5 HOH B 23 523 88 HOH HOH . G 5 HOH B 24 524 145 HOH HOH . G 5 HOH B 25 525 97 HOH HOH . G 5 HOH B 26 526 103 HOH HOH . G 5 HOH B 27 527 96 HOH HOH . G 5 HOH B 28 528 102 HOH HOH . H 5 HOH A 1 501 142 HOH HOH . H 5 HOH A 2 502 36 HOH HOH . H 5 HOH A 3 503 124 HOH HOH . H 5 HOH A 4 504 117 HOH HOH . H 5 HOH A 5 505 73 HOH HOH . H 5 HOH A 6 506 24 HOH HOH . H 5 HOH A 7 507 2 HOH HOH . H 5 HOH A 8 508 153 HOH HOH . H 5 HOH A 9 509 63 HOH HOH . H 5 HOH A 10 510 57 HOH HOH . H 5 HOH A 11 511 155 HOH HOH . H 5 HOH A 12 512 115 HOH HOH . H 5 HOH A 13 513 109 HOH HOH . H 5 HOH A 14 514 140 HOH HOH . H 5 HOH A 15 515 45 HOH HOH . H 5 HOH A 16 516 4 HOH HOH . H 5 HOH A 17 517 29 HOH HOH . H 5 HOH A 18 518 75 HOH HOH . H 5 HOH A 19 519 69 HOH HOH . H 5 HOH A 20 520 8 HOH HOH . H 5 HOH A 21 521 12 HOH HOH . H 5 HOH A 22 522 114 HOH HOH . H 5 HOH A 23 523 15 HOH HOH . H 5 HOH A 24 524 40 HOH HOH . H 5 HOH A 25 525 20 HOH HOH . H 5 HOH A 26 526 135 HOH HOH . H 5 HOH A 27 527 112 HOH HOH . H 5 HOH A 28 528 107 HOH HOH . H 5 HOH A 29 529 34 HOH HOH . H 5 HOH A 30 530 13 HOH HOH . H 5 HOH A 31 531 119 HOH HOH . H 5 HOH A 32 532 23 HOH HOH . H 5 HOH A 33 533 126 HOH HOH . H 5 HOH A 34 534 106 HOH HOH . H 5 HOH A 35 535 44 HOH HOH . H 5 HOH A 36 536 11 HOH HOH . H 5 HOH A 37 537 14 HOH HOH . H 5 HOH A 38 538 56 HOH HOH . H 5 HOH A 39 539 59 HOH HOH . H 5 HOH A 40 540 65 HOH HOH . H 5 HOH A 41 541 10 HOH HOH . H 5 HOH A 42 542 150 HOH HOH . H 5 HOH A 43 543 43 HOH HOH . H 5 HOH A 44 544 132 HOH HOH . H 5 HOH A 45 545 21 HOH HOH . H 5 HOH A 46 546 149 HOH HOH . H 5 HOH A 47 547 154 HOH HOH . H 5 HOH A 48 548 1 HOH HOH . H 5 HOH A 49 549 3 HOH HOH . H 5 HOH A 50 550 130 HOH HOH . H 5 HOH A 51 551 50 HOH HOH . H 5 HOH A 52 552 68 HOH HOH . H 5 HOH A 53 553 79 HOH HOH . H 5 HOH A 54 554 17 HOH HOH . H 5 HOH A 55 555 105 HOH HOH . H 5 HOH A 56 556 9 HOH HOH . H 5 HOH A 57 557 127 HOH HOH . H 5 HOH A 58 558 64 HOH HOH . H 5 HOH A 59 559 104 HOH HOH . H 5 HOH A 60 560 32 HOH HOH . H 5 HOH A 61 561 131 HOH HOH . H 5 HOH A 62 562 7 HOH HOH . H 5 HOH A 63 563 159 HOH HOH . H 5 HOH A 64 564 5 HOH HOH . H 5 HOH A 65 565 74 HOH HOH . H 5 HOH A 66 566 62 HOH HOH . H 5 HOH A 67 567 46 HOH HOH . H 5 HOH A 68 568 49 HOH HOH . H 5 HOH A 69 569 22 HOH HOH . H 5 HOH A 70 570 72 HOH HOH . H 5 HOH A 71 571 19 HOH HOH . H 5 HOH A 72 572 30 HOH HOH . H 5 HOH A 73 573 51 HOH HOH . H 5 HOH A 74 574 70 HOH HOH . H 5 HOH A 75 575 139 HOH HOH . H 5 HOH A 76 576 118 HOH HOH . H 5 HOH A 77 577 77 HOH HOH . H 5 HOH A 78 578 27 HOH HOH . H 5 HOH A 79 579 37 HOH HOH . H 5 HOH A 80 580 123 HOH HOH . H 5 HOH A 81 581 35 HOH HOH . H 5 HOH A 82 582 129 HOH HOH . H 5 HOH A 83 583 125 HOH HOH . H 5 HOH A 84 584 122 HOH HOH . H 5 HOH A 85 585 41 HOH HOH . H 5 HOH A 86 586 6 HOH HOH . H 5 HOH A 87 587 26 HOH HOH . H 5 HOH A 88 588 18 HOH HOH . H 5 HOH A 89 589 157 HOH HOH . H 5 HOH A 90 590 116 HOH HOH . H 5 HOH A 91 591 52 HOH HOH . H 5 HOH A 92 592 121 HOH HOH . H 5 HOH A 93 593 141 HOH HOH . H 5 HOH A 94 594 81 HOH HOH . H 5 HOH A 95 595 47 HOH HOH . H 5 HOH A 96 596 58 HOH HOH . H 5 HOH A 97 597 146 HOH HOH . H 5 HOH A 98 598 16 HOH HOH . H 5 HOH A 99 599 61 HOH HOH . H 5 HOH A 100 600 144 HOH HOH . H 5 HOH A 101 601 151 HOH HOH . H 5 HOH A 102 602 42 HOH HOH . H 5 HOH A 103 603 134 HOH HOH . H 5 HOH A 104 604 48 HOH HOH . H 5 HOH A 105 605 80 HOH HOH . H 5 HOH A 106 606 82 HOH HOH . H 5 HOH A 107 607 108 HOH HOH . H 5 HOH A 108 608 78 HOH HOH . H 5 HOH A 109 609 128 HOH HOH . H 5 HOH A 110 610 31 HOH HOH . H 5 HOH A 111 611 110 HOH HOH . H 5 HOH A 112 612 113 HOH HOH . H 5 HOH A 113 613 136 HOH HOH . H 5 HOH A 114 614 60 HOH HOH . H 5 HOH A 115 615 143 HOH HOH . H 5 HOH A 116 616 137 HOH HOH . H 5 HOH A 117 617 148 HOH HOH . H 5 HOH A 118 618 111 HOH HOH . H 5 HOH A 119 619 147 HOH HOH . H 5 HOH A 120 620 28 HOH HOH . H 5 HOH A 121 621 120 HOH HOH . H 5 HOH A 122 622 25 HOH HOH . H 5 HOH A 123 623 138 HOH HOH . H 5 HOH A 124 624 133 HOH HOH . H 5 HOH A 125 625 33 HOH HOH . H 5 HOH A 126 626 71 HOH HOH . H 5 HOH A 127 627 156 HOH HOH . H 5 HOH A 128 628 158 HOH HOH . H 5 HOH A 129 629 38 HOH HOH . H 5 HOH A 130 630 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 2 21.025 6.131 -9.144 1 72.28 ? N1 FMN 401 B 1 HETATM 2 C C2 FMN . . . C 2 21.357 6.808 -7.99 1 69.88 ? C2 FMN 401 B 1 HETATM 3 O O2 FMN . . . C 2 22.195 6.332 -7.226 1 65.4 ? O2 FMN 401 B 1 HETATM 4 N N3 FMN . . . C 2 20.754 8.017 -7.697 1 67.56 ? N3 FMN 401 B 1 HETATM 5 C C4 FMN . . . C 2 19.816 8.55 -8.557 1 74.88 ? C4 FMN 401 B 1 HETATM 6 O O4 FMN . . . C 2 19.279 9.627 -8.293 1 69.91 ? O4 FMN 401 B 1 HETATM 7 C C4A FMN . . . C 2 19.48 7.864 -9.721 1 73.96 ? C4A FMN 401 B 1 HETATM 8 N N5 FMN . . . C 2 18.549 8.385 -10.591 1 73.02 ? N5 FMN 401 B 1 HETATM 9 C C5A FMN . . . C 2 18.213 7.702 -11.742 1 75.47 ? C5A FMN 401 B 1 HETATM 10 C C6 FMN . . . C 2 17.267 8.234 -12.61 1 74.67 ? C6 FMN 401 B 1 HETATM 11 C C7 FMN . . . C 2 16.927 7.552 -13.773 1 79.51 ? C7 FMN 401 B 1 HETATM 12 C C7M FMN . . . C 2 15.906 8.13 -14.71 1 75.9 ? C7M FMN 401 B 1 HETATM 13 C C8 FMN . . . C 2 17.535 6.336 -14.067 1 79.83 ? C8 FMN 401 B 1 HETATM 14 C C8M FMN . . . C 2 17.177 5.592 -15.319 1 80.62 ? C8M FMN 401 B 1 HETATM 15 C C9 FMN . . . C 2 18.482 5.807 -13.197 1 77.8 ? C9 FMN 401 B 1 HETATM 16 C C9A FMN . . . C 2 18.821 6.486 -12.032 1 76.72 ? C9A FMN 401 B 1 HETATM 17 N N10 FMN . . . C 2 19.762 5.963 -11.165 1 73.41 ? N10 FMN 401 B 1 HETATM 18 C C10 FMN . . . C 2 20.093 6.652 -10.015 1 73.18 ? C10 FMN 401 B 1 HETATM 19 C C1' FMN . . . C 2 20.422 4.645 -11.46 1 75.88 ? C1' FMN 401 B 1 HETATM 20 C C2' FMN . . . C 2 19.546 3.526 -10.887 1 76.38 ? C2' FMN 401 B 1 HETATM 21 O O2' FMN . . . C 2 19.516 3.598 -9.478 1 72.59 ? O2' FMN 401 B 1 HETATM 22 C C3' FMN . . . C 2 20.012 2.136 -11.306 1 74.32 ? C3' FMN 401 B 1 HETATM 23 O O3' FMN . . . C 2 21.409 2.022 -11.145 1 75.5 ? O3' FMN 401 B 1 HETATM 24 C C4' FMN . . . C 2 19.643 1.843 -12.754 1 77.32 ? C4' FMN 401 B 1 HETATM 25 O O4' FMN . . . C 2 18.533 2.622 -13.143 1 77.74 ? O4' FMN 401 B 1 HETATM 26 C C5' FMN . . . C 2 19.27 0.379 -12.919 1 76.06 ? C5' FMN 401 B 1 HETATM 27 O O5' FMN . . . C 2 19.278 0.072 -14.292 1 76.54 ? O5' FMN 401 B 1 HETATM 28 P P FMN . . . C 2 17.88 -0.262 -15.007 1 86.37 ? P FMN 401 B 1 HETATM 29 O O1P FMN . . . C 2 17.067 1.011 -15.033 1 81.01 ? O1P FMN 401 B 1 HETATM 30 O O2P FMN . . . C 2 17.164 -1.345 -14.233 1 77.24 ? O2P FMN 401 B 1 HETATM 31 O O3P FMN . . . C 2 18.114 -0.698 -16.429 1 81.82 ? O3P FMN 401 B 1 # _model_server_stats.io_time_ms 115 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #