data_9EMB
#
_model_server_result.job_id            1kB8XSvKI0OEhAf5Ftc24A 
_model_server_result.datetime_utc      '2024-12-21 18:35:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9emb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":601}' 
#
_entry.id    9EMB 
#
_exptl.entry_id    9EMB 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9EMB 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9EMB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     9EMB 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AMP A 1 601 602 AMP AMP . 
D 3 PGW A 1 602 603 PGW PGW . 
E 2 AMP B 1 601 602 AMP AMP . 
F 3 PGW B 1 602 603 PGW PGW . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . E 2 157.507 136.352 126.722 1 125.88 ? P AMP 601 B 1 
HETATM 2 O O1P AMP . . . E 2 158.645 137.014 125.984 1 123.58 ? O1P AMP 601 B 1 
HETATM 3 O O2P AMP . . . E 2 156.171 137.031 126.556 1 119.24 ? O2P AMP 601 B 1 
HETATM 4 O O3P AMP . . . E 2 157.459 134.85 126.583 1 122.06 ? O3P AMP 601 B 1 
HETATM 5 O O5' AMP . . . E 2 157.86 136.583 128.256 1 122 ? O5' AMP 601 B 1 
HETATM 6 C C5' AMP . . . E 2 159.071 136.083 128.816 1 119.06 ? C5' AMP 601 B 1 
HETATM 7 C C4' AMP . . . E 2 159.21 136.478 130.264 1 115.57 ? C4' AMP 601 B 1 
HETATM 8 O O4' AMP . . . E 2 160.291 135.721 130.873 1 114.49 ? O4' AMP 601 B 1 
HETATM 9 C C3' AMP . . . E 2 159.529 137.958 130.503 1 122.18 ? C3' AMP 601 B 1 
HETATM 10 O O3' AMP . . . E 2 158.738 138.459 131.579 1 123.75 ? O3' AMP 601 B 1 
HETATM 11 C C2' AMP . . . E 2 161.005 137.942 130.902 1 123.7 ? C2' AMP 601 B 1 
HETATM 12 O O2' AMP . . . E 2 161.404 139.009 131.735 1 128.22 ? O2' AMP 601 B 1 
HETATM 13 C C1' AMP . . . E 2 161.112 136.597 131.608 1 123.6 ? C1' AMP 601 B 1 
HETATM 14 N N9 AMP . . . E 2 162.467 136.043 131.672 1 120.34 ? N9 AMP 601 B 1 
HETATM 15 C C8 AMP . . . E 2 163.387 136.024 130.689 1 118.97 ? C8 AMP 601 B 1 
HETATM 16 N N7 AMP . . . E 2 164.535 135.439 131.119 1 119.27 ? N7 AMP 601 B 1 
HETATM 17 C C5 AMP . . . E 2 164.358 135.077 132.402 1 122.32 ? C5 AMP 601 B 1 
HETATM 18 C C6 AMP . . . E 2 165.164 134.414 133.453 1 123.87 ? C6 AMP 601 B 1 
HETATM 19 N N6 AMP . . . E 2 166.432 134.005 133.213 1 127.04 ? N6 AMP 601 B 1 
HETATM 20 N N1 AMP . . . E 2 164.592 134.229 134.662 1 117.76 ? N1 AMP 601 B 1 
HETATM 21 C C2 AMP . . . E 2 163.334 134.626 134.926 1 119.8 ? C2 AMP 601 B 1 
HETATM 22 N N3 AMP . . . E 2 162.553 135.232 134.015 1 118.94 ? N3 AMP 601 B 1 
HETATM 23 C C4 AMP . . . E 2 162.997 135.485 132.762 1 119.15 ? C4 AMP 601 B 1 
HETATM 24 H "H5'1" AMP . . . E 2 159.919 136.473 128.251 1 120.72 ? "H5'1" AMP 601 B 1 
HETATM 25 H "H5'2" AMP . . . E 2 159.085 134.994 128.733 1 121.77 ? "H5'2" AMP 601 B 1 
HETATM 26 H H4' AMP . . . E 2 158.267 136.243 130.777 1 121.04 ? H4' AMP 601 B 1 
HETATM 27 H H3' AMP . . . E 2 159.384 138.538 129.581 1 122.04 ? H3' AMP 601 B 1 
HETATM 28 H HO3' AMP . . . E 2 158.929 139.398 131.71 1 122.44 ? HO3' AMP 601 B 1 
HETATM 29 H H2' AMP . . . E 2 161.614 137.928 129.988 1 121.12 ? H2' AMP 601 B 1 
HETATM 30 H HO2' AMP . . . E 2 161.281 139.846 131.267 1 122.68 ? HO2' AMP 601 B 1 
HETATM 31 H H1' AMP . . . E 2 160.713 136.708 132.626 1 122.77 ? H1' AMP 601 B 1 
HETATM 32 H H8 AMP . . . E 2 163.235 136.417 129.691 1 121.61 ? H8 AMP 601 B 1 
HETATM 33 H HN61 AMP . . . E 2 166.964 133.555 133.943 1 121.85 ? HN61 AMP 601 B 1 
HETATM 34 H HN62 AMP . . . E 2 166.846 134.15 132.303 1 122.66 ? HN62 AMP 601 B 1 
HETATM 35 H H2 AMP . . . E 2 162.932 134.45 135.916 1 122.34 ? H2 AMP 601 B 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          29 
_model_server_stats.element_count           35 
#