data_9EMC
#
_model_server_result.job_id            -b1GOTxelCSgdHVGPV3jXw 
_model_server_result.datetime_utc      '2024-11-22 06:12:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9emc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":501}' 
#
_entry.id    9EMC 
#
_exptl.entry_id    9EMC 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9EMC 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9EMC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 I N N 
? 3 K N N 
? 3 M N N 
? 3 O N N 
? 3 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 G O3G ATP . A ATP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc2 B OG1 THR 102 D THR 84 1_555 J MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc3 I O3G ATP . D ATP 501 1_555 J MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc4 I O1B ATP . D ATP 501 1_555 J MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc5 K O3G ATP . B ATP 501 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc6 M O3G ATP . C ATP 501 1_555 N MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc7 E OG1 THR 102 F THR 84 1_555 P MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc8 O O3G ATP . F ATP 501 1_555 P MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc9 O O1B ATP . F ATP 501 1_555 P MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc10 F OG1 THR 102 E THR 84 1_555 R MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc11 Q O3G ATP . E ATP 501 1_555 R MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc12 Q O1B ATP . E ATP 501 1_555 R MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     9EMC 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 ATP A 1 501 501 ATP ATP . 
H 4 MG A 1 502 502 MG MG . 
I 3 ATP D 1 501 501 ATP ATP . 
J 4 MG D 1 502 502 MG MG . 
K 3 ATP B 1 501 501 ATP ATP . 
L 4 MG B 1 502 502 MG MG . 
M 3 ATP C 1 501 501 ATP ATP . 
N 4 MG C 1 502 502 MG MG . 
O 3 ATP F 1 501 501 ATP ATP . 
P 4 MG F 1 502 502 MG MG . 
Q 3 ATP E 1 501 501 ATP ATP . 
R 4 MG E 1 502 502 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . Q 3 104.519 145.487 101.359 1 23.72 ? PG ATP 501 E 1 
HETATM 2 O O1G ATP . . . Q 3 104.387 144.115 100.827 1 16.76 ? O1G ATP 501 E 1 
HETATM 3 O O2G ATP . . . Q 3 105.513 146.324 100.602 1 31.35 ? O2G ATP 501 E 1 
HETATM 4 O O3G ATP . . . Q 3 104.835 145.536 102.837 1 22.71 ? O3G ATP 501 E 1 
HETATM 5 P PB ATP . . . Q 3 101.827 146.47 102.007 1 24.24 ? PB ATP 501 E 1 
HETATM 6 O O1B ATP . . . Q 3 101.862 145.672 103.232 1 27.29 ? O1B ATP 501 E 1 
HETATM 7 O O2B ATP . . . Q 3 100.688 146.242 101.035 1 27.59 ? O2B ATP 501 E 1 
HETATM 8 O O3B ATP . . . Q 3 103.159 146.27 101.225 1 22.99 ? O3B ATP 501 E 1 
HETATM 9 P PA ATP . . . Q 3 101.64 148.892 103.599 1 18.74 ? PA ATP 501 E 1 
HETATM 10 O O1A ATP . . . Q 3 100.492 148.441 104.403 1 24.68 ? O1A ATP 501 E 1 
HETATM 11 O O2A ATP . . . Q 3 102.953 148.882 104.36 1 28.16 ? O2A ATP 501 E 1 
HETATM 12 O O3A ATP . . . Q 3 101.848 148.02 102.342 1 12.84 ? O3A ATP 501 E 1 
HETATM 13 O O5' ATP . . . Q 3 101.399 150.348 103.048 1 28.66 ? O5' ATP 501 E 1 
HETATM 14 C C5' ATP . . . Q 3 102.479 151.302 102.961 1 27.68 ? C5' ATP 501 E 1 
HETATM 15 C C4' ATP . . . Q 3 102.053 152.558 103.674 1 28.19 ? C4' ATP 501 E 1 
HETATM 16 O O4' ATP . . . Q 3 101.065 153.246 102.883 1 28.11 ? O4' ATP 501 E 1 
HETATM 17 C C3' ATP . . . Q 3 101.401 152.319 105.03 1 23.95 ? C3' ATP 501 E 1 
HETATM 18 O O3' ATP . . . Q 3 102.388 152.386 106.05 1 27.78 ? O3' ATP 501 E 1 
HETATM 19 C C2' ATP . . . Q 3 100.434 153.489 105.157 1 21.51 ? C2' ATP 501 E 1 
HETATM 20 O O2' ATP . . . Q 3 101.126 154.612 105.684 1 37.73 ? O2' ATP 501 E 1 
HETATM 21 C C1' ATP . . . Q 3 100.029 153.744 103.707 1 21.57 ? C1' ATP 501 E 1 
HETATM 22 N N9 ATP . . . Q 3 98.787 153.112 103.294 1 11.96 ? N9 ATP 501 E 1 
HETATM 23 C C8 ATP . . . Q 3 98.674 151.998 102.514 1 21.34 ? C8 ATP 501 E 1 
HETATM 24 N N7 ATP . . . Q 3 97.441 151.641 102.268 1 32.19 ? N7 ATP 501 E 1 
HETATM 25 C C5 ATP . . . Q 3 96.684 152.601 102.914 1 27.29 ? C5 ATP 501 E 1 
HETATM 26 C C6 ATP . . . Q 3 95.295 152.805 103.041 1 21.7 ? C6 ATP 501 E 1 
HETATM 27 N N6 ATP . . . Q 3 94.375 152.011 102.488 1 17.77 ? N6 ATP 501 E 1 
HETATM 28 N N1 ATP . . . Q 3 94.871 153.87 103.772 1 17.89 ? N1 ATP 501 E 1 
HETATM 29 C C2 ATP . . . Q 3 95.778 154.673 104.335 1 19.88 ? C2 ATP 501 E 1 
HETATM 30 N N3 ATP . . . Q 3 97.108 154.575 104.274 1 28.29 ? N3 ATP 501 E 1 
HETATM 31 C C4 ATP . . . Q 3 97.501 153.518 103.554 1 22.4 ? C4 ATP 501 E 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#