data_9EMV # _model_server_result.job_id Vyvx9E1LYdLiW3UStzHshw _model_server_result.datetime_utc '2024-11-24 10:08:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9emv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":4402}' # _entry.id 9EMV # _exptl.entry_id 9EMV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9EMV _cell.length_a 169.51 _cell.length_b 169.51 _cell.length_c 52.25 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9EMV _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 N N N ? 9 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 75 B CYS 4327 1_555 N ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc2 B SG CYS 78 B CYS 4330 1_555 N ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc3 B NE2 HIS 84 B HIS 4336 1_555 N ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc4 B SG CYS 91 B CYS 4343 1_555 N ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc5 B SG CYS 118 B CYS 4370 1_555 O ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc6 B SG CYS 121 B CYS 4373 1_555 O ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc7 B SG CYS 129 B CYS 4381 1_555 O ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc8 B SG CYS 131 B CYS 4383 1_555 O ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9EMV _atom_sites.fract_transf_matrix[1][1] 0.005899 _atom_sites.fract_transf_matrix[1][2] 0.003406 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006812 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019139 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SGV A 1 7201 7907 SGV SGV . D 4 GTA A 1 7202 7908 GTA GTA . E 5 MES A 1 7203 7913 MES MES . F 6 SAH A 1 7204 7914 SAH SAH . G 7 EDO A 1 7205 7916 EDO EDO . H 7 EDO A 1 7206 7919 EDO EDO . I 7 EDO A 1 7207 7920 EDO EDO . J 7 EDO A 1 7208 7921 EDO EDO . K 7 EDO A 1 7209 7922 EDO EDO . L 7 EDO A 1 7210 7923 EDO EDO . M 8 V9G A 1 7211 7924 V9G V9G . N 9 ZN B 1 4401 8654 ZN ZN . O 9 ZN B 1 4402 8655 ZN ZN . P 7 EDO B 1 4403 8656 EDO EDO . Q 7 EDO B 1 4404 8657 EDO EDO . R 10 HOH A 1 7301 2 HOH HOH . R 10 HOH A 2 7302 33 HOH HOH . R 10 HOH A 3 7303 15 HOH HOH . R 10 HOH A 4 7304 123 HOH HOH . R 10 HOH A 5 7305 72 HOH HOH . R 10 HOH A 6 7306 7 HOH HOH . R 10 HOH A 7 7307 3 HOH HOH . R 10 HOH A 8 7308 80 HOH HOH . R 10 HOH A 9 7309 157 HOH HOH . R 10 HOH A 10 7310 102 HOH HOH . R 10 HOH A 11 7311 14 HOH HOH . R 10 HOH A 12 7312 40 HOH HOH . R 10 HOH A 13 7313 37 HOH HOH . R 10 HOH A 14 7314 138 HOH HOH . R 10 HOH A 15 7315 8 HOH HOH . R 10 HOH A 16 7316 20 HOH HOH . R 10 HOH A 17 7317 35 HOH HOH . R 10 HOH A 18 7318 4 HOH HOH . R 10 HOH A 19 7319 19 HOH HOH . R 10 HOH A 20 7320 9 HOH HOH . R 10 HOH A 21 7321 100 HOH HOH . R 10 HOH A 22 7322 134 HOH HOH . R 10 HOH A 23 7323 29 HOH HOH . R 10 HOH A 24 7324 1 HOH HOH . R 10 HOH A 25 7325 21 HOH HOH . R 10 HOH A 26 7326 31 HOH HOH . R 10 HOH A 27 7327 49 HOH HOH . R 10 HOH A 28 7328 52 HOH HOH . R 10 HOH A 29 7329 41 HOH HOH . R 10 HOH A 30 7330 122 HOH HOH . R 10 HOH A 31 7331 86 HOH HOH . R 10 HOH A 32 7332 56 HOH HOH . R 10 HOH A 33 7333 45 HOH HOH . R 10 HOH A 34 7334 13 HOH HOH . R 10 HOH A 35 7335 152 HOH HOH . R 10 HOH A 36 7336 125 HOH HOH . R 10 HOH A 37 7337 44 HOH HOH . R 10 HOH A 38 7338 5 HOH HOH . R 10 HOH A 39 7339 89 HOH HOH . R 10 HOH A 40 7340 77 HOH HOH . R 10 HOH A 41 7341 106 HOH HOH . R 10 HOH A 42 7342 179 HOH HOH . R 10 HOH A 43 7343 55 HOH HOH . R 10 HOH A 44 7344 30 HOH HOH . R 10 HOH A 45 7345 66 HOH HOH . R 10 HOH A 46 7346 177 HOH HOH . R 10 HOH A 47 7347 111 HOH HOH . R 10 HOH A 48 7348 150 HOH HOH . R 10 HOH A 49 7349 114 HOH HOH . R 10 HOH A 50 7350 158 HOH HOH . R 10 HOH A 51 7351 151 HOH HOH . R 10 HOH A 52 7352 25 HOH HOH . R 10 HOH A 53 7353 75 HOH HOH . R 10 HOH A 54 7354 140 HOH HOH . R 10 HOH A 55 7355 131 HOH HOH . R 10 HOH A 56 7356 59 HOH HOH . R 10 HOH A 57 7357 178 HOH HOH . R 10 HOH A 58 7358 11 HOH HOH . R 10 HOH A 59 7359 32 HOH HOH . R 10 HOH A 60 7360 69 HOH HOH . R 10 HOH A 61 7361 97 HOH HOH . R 10 HOH A 62 7362 132 HOH HOH . R 10 HOH A 63 7363 18 HOH HOH . R 10 HOH A 64 7364 23 HOH HOH . R 10 HOH A 65 7365 60 HOH HOH . R 10 HOH A 66 7366 109 HOH HOH . R 10 HOH A 67 7367 48 HOH HOH . R 10 HOH A 68 7368 144 HOH HOH . R 10 HOH A 69 7369 115 HOH HOH . R 10 HOH A 70 7370 141 HOH HOH . R 10 HOH A 71 7371 180 HOH HOH . R 10 HOH A 72 7372 167 HOH HOH . R 10 HOH A 73 7373 126 HOH HOH . R 10 HOH A 74 7374 171 HOH HOH . R 10 HOH A 75 7375 92 HOH HOH . R 10 HOH A 76 7376 105 HOH HOH . R 10 HOH A 77 7377 113 HOH HOH . R 10 HOH A 78 7378 188 HOH HOH . R 10 HOH A 79 7379 187 HOH HOH . R 10 HOH A 80 7380 164 HOH HOH . R 10 HOH A 81 7381 63 HOH HOH . R 10 HOH A 82 7382 153 HOH HOH . R 10 HOH A 83 7383 128 HOH HOH . R 10 HOH A 84 7384 58 HOH HOH . R 10 HOH A 85 7385 148 HOH HOH . R 10 HOH A 86 7386 118 HOH HOH . R 10 HOH A 87 7387 53 HOH HOH . R 10 HOH A 88 7388 175 HOH HOH . R 10 HOH A 89 7389 176 HOH HOH . R 10 HOH A 90 7390 108 HOH HOH . R 10 HOH A 91 7391 186 HOH HOH . R 10 HOH A 92 7392 136 HOH HOH . R 10 HOH A 93 7393 173 HOH HOH . R 10 HOH A 94 7394 124 HOH HOH . R 10 HOH A 95 7395 184 HOH HOH . R 10 HOH A 96 7396 163 HOH HOH . R 10 HOH A 97 7397 91 HOH HOH . R 10 HOH A 98 7398 170 HOH HOH . R 10 HOH A 99 7399 146 HOH HOH . R 10 HOH A 100 7400 155 HOH HOH . R 10 HOH A 101 7401 71 HOH HOH . R 10 HOH A 102 7402 127 HOH HOH . R 10 HOH A 103 7403 165 HOH HOH . R 10 HOH A 104 7404 81 HOH HOH . R 10 HOH A 105 7405 88 HOH HOH . R 10 HOH A 106 7406 142 HOH HOH . R 10 HOH A 107 7407 159 HOH HOH . R 10 HOH A 108 7408 143 HOH HOH . R 10 HOH A 109 7409 149 HOH HOH . R 10 HOH A 110 7410 174 HOH HOH . R 10 HOH A 111 7411 38 HOH HOH . R 10 HOH A 112 7412 90 HOH HOH . R 10 HOH A 113 7413 87 HOH HOH . R 10 HOH A 114 7414 96 HOH HOH . R 10 HOH A 115 7415 94 HOH HOH . R 10 HOH A 116 7416 166 HOH HOH . R 10 HOH A 117 7417 181 HOH HOH . R 10 HOH A 118 7418 154 HOH HOH . R 10 HOH A 119 7419 183 HOH HOH . R 10 HOH A 120 7420 185 HOH HOH . R 10 HOH A 121 7421 182 HOH HOH . S 10 HOH B 1 4501 62 HOH HOH . S 10 HOH B 2 4502 172 HOH HOH . S 10 HOH B 3 4503 46 HOH HOH . S 10 HOH B 4 4504 137 HOH HOH . S 10 HOH B 5 4505 64 HOH HOH . S 10 HOH B 6 4506 42 HOH HOH . S 10 HOH B 7 4507 74 HOH HOH . S 10 HOH B 8 4508 39 HOH HOH . S 10 HOH B 9 4509 10 HOH HOH . S 10 HOH B 10 4510 22 HOH HOH . S 10 HOH B 11 4511 24 HOH HOH . S 10 HOH B 12 4512 28 HOH HOH . S 10 HOH B 13 4513 36 HOH HOH . S 10 HOH B 14 4514 107 HOH HOH . S 10 HOH B 15 4515 83 HOH HOH . S 10 HOH B 16 4516 104 HOH HOH . S 10 HOH B 17 4517 70 HOH HOH . S 10 HOH B 18 4518 54 HOH HOH . S 10 HOH B 19 4519 43 HOH HOH . S 10 HOH B 20 4520 67 HOH HOH . S 10 HOH B 21 4521 85 HOH HOH . S 10 HOH B 22 4522 130 HOH HOH . S 10 HOH B 23 4523 162 HOH HOH . S 10 HOH B 24 4524 156 HOH HOH . S 10 HOH B 25 4525 160 HOH HOH . S 10 HOH B 26 4526 169 HOH HOH . S 10 HOH B 27 4527 61 HOH HOH . S 10 HOH B 28 4528 168 HOH HOH . S 10 HOH B 29 4529 161 HOH HOH . S 10 HOH B 30 4530 116 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id O _atom_site.label_entity_id 9 _atom_site.Cartn_x -106.515 _atom_site.Cartn_y 21.799 _atom_site.Cartn_z -32.285 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 73.7 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 4402 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 132 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 988 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 1 #