data_9EMV
#
_model_server_result.job_id            XiFeUdWTT-EMTo5MJZof0A 
_model_server_result.datetime_utc      '2024-11-01 11:27:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9emv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":7208}' 
#
_entry.id    9EMV 
#
_exptl.entry_id    9EMV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9EMV 
_cell.length_a            169.51 
_cell.length_b            169.51 
_cell.length_c            52.25 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9EMV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 G N N 
? 7 H N N 
? 7 I N N 
? 7 J N N 
? 7 K N N 
? 7 L N N 
? 7 P N N 
? 7 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B SG CYS 75 B CYS 4327 1_555 N ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc2 B SG CYS 78 B CYS 4330 1_555 N ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc3 B NE2 HIS 84 B HIS 4336 1_555 N ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc4 B SG CYS 91 B CYS 4343 1_555 N ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc5 B SG CYS 118 B CYS 4370 1_555 O ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc6 B SG CYS 121 B CYS 4373 1_555 O ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc7 B SG CYS 129 B CYS 4381 1_555 O ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc8 B SG CYS 131 B CYS 4383 1_555 O ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     9EMV 
_atom_sites.fract_transf_matrix[1][1]    0.005899 
_atom_sites.fract_transf_matrix[1][2]    0.003406 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006812 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019139 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SGV A 1 7201 7907 SGV SGV . 
D 4 GTA A 1 7202 7908 GTA GTA . 
E 5 MES A 1 7203 7913 MES MES . 
F 6 SAH A 1 7204 7914 SAH SAH . 
G 7 EDO A 1 7205 7916 EDO EDO . 
H 7 EDO A 1 7206 7919 EDO EDO . 
I 7 EDO A 1 7207 7920 EDO EDO . 
J 7 EDO A 1 7208 7921 EDO EDO . 
K 7 EDO A 1 7209 7922 EDO EDO . 
L 7 EDO A 1 7210 7923 EDO EDO . 
M 8 V9G A 1 7211 7924 V9G V9G . 
N 9 ZN B 1 4401 8654 ZN ZN . 
O 9 ZN B 1 4402 8655 ZN ZN . 
P 7 EDO B 1 4403 8656 EDO EDO . 
Q 7 EDO B 1 4404 8657 EDO EDO . 
R 10 HOH A 1 7301 2 HOH HOH . 
R 10 HOH A 2 7302 33 HOH HOH . 
R 10 HOH A 3 7303 15 HOH HOH . 
R 10 HOH A 4 7304 123 HOH HOH . 
R 10 HOH A 5 7305 72 HOH HOH . 
R 10 HOH A 6 7306 7 HOH HOH . 
R 10 HOH A 7 7307 3 HOH HOH . 
R 10 HOH A 8 7308 80 HOH HOH . 
R 10 HOH A 9 7309 157 HOH HOH . 
R 10 HOH A 10 7310 102 HOH HOH . 
R 10 HOH A 11 7311 14 HOH HOH . 
R 10 HOH A 12 7312 40 HOH HOH . 
R 10 HOH A 13 7313 37 HOH HOH . 
R 10 HOH A 14 7314 138 HOH HOH . 
R 10 HOH A 15 7315 8 HOH HOH . 
R 10 HOH A 16 7316 20 HOH HOH . 
R 10 HOH A 17 7317 35 HOH HOH . 
R 10 HOH A 18 7318 4 HOH HOH . 
R 10 HOH A 19 7319 19 HOH HOH . 
R 10 HOH A 20 7320 9 HOH HOH . 
R 10 HOH A 21 7321 100 HOH HOH . 
R 10 HOH A 22 7322 134 HOH HOH . 
R 10 HOH A 23 7323 29 HOH HOH . 
R 10 HOH A 24 7324 1 HOH HOH . 
R 10 HOH A 25 7325 21 HOH HOH . 
R 10 HOH A 26 7326 31 HOH HOH . 
R 10 HOH A 27 7327 49 HOH HOH . 
R 10 HOH A 28 7328 52 HOH HOH . 
R 10 HOH A 29 7329 41 HOH HOH . 
R 10 HOH A 30 7330 122 HOH HOH . 
R 10 HOH A 31 7331 86 HOH HOH . 
R 10 HOH A 32 7332 56 HOH HOH . 
R 10 HOH A 33 7333 45 HOH HOH . 
R 10 HOH A 34 7334 13 HOH HOH . 
R 10 HOH A 35 7335 152 HOH HOH . 
R 10 HOH A 36 7336 125 HOH HOH . 
R 10 HOH A 37 7337 44 HOH HOH . 
R 10 HOH A 38 7338 5 HOH HOH . 
R 10 HOH A 39 7339 89 HOH HOH . 
R 10 HOH A 40 7340 77 HOH HOH . 
R 10 HOH A 41 7341 106 HOH HOH . 
R 10 HOH A 42 7342 179 HOH HOH . 
R 10 HOH A 43 7343 55 HOH HOH . 
R 10 HOH A 44 7344 30 HOH HOH . 
R 10 HOH A 45 7345 66 HOH HOH . 
R 10 HOH A 46 7346 177 HOH HOH . 
R 10 HOH A 47 7347 111 HOH HOH . 
R 10 HOH A 48 7348 150 HOH HOH . 
R 10 HOH A 49 7349 114 HOH HOH . 
R 10 HOH A 50 7350 158 HOH HOH . 
R 10 HOH A 51 7351 151 HOH HOH . 
R 10 HOH A 52 7352 25 HOH HOH . 
R 10 HOH A 53 7353 75 HOH HOH . 
R 10 HOH A 54 7354 140 HOH HOH . 
R 10 HOH A 55 7355 131 HOH HOH . 
R 10 HOH A 56 7356 59 HOH HOH . 
R 10 HOH A 57 7357 178 HOH HOH . 
R 10 HOH A 58 7358 11 HOH HOH . 
R 10 HOH A 59 7359 32 HOH HOH . 
R 10 HOH A 60 7360 69 HOH HOH . 
R 10 HOH A 61 7361 97 HOH HOH . 
R 10 HOH A 62 7362 132 HOH HOH . 
R 10 HOH A 63 7363 18 HOH HOH . 
R 10 HOH A 64 7364 23 HOH HOH . 
R 10 HOH A 65 7365 60 HOH HOH . 
R 10 HOH A 66 7366 109 HOH HOH . 
R 10 HOH A 67 7367 48 HOH HOH . 
R 10 HOH A 68 7368 144 HOH HOH . 
R 10 HOH A 69 7369 115 HOH HOH . 
R 10 HOH A 70 7370 141 HOH HOH . 
R 10 HOH A 71 7371 180 HOH HOH . 
R 10 HOH A 72 7372 167 HOH HOH . 
R 10 HOH A 73 7373 126 HOH HOH . 
R 10 HOH A 74 7374 171 HOH HOH . 
R 10 HOH A 75 7375 92 HOH HOH . 
R 10 HOH A 76 7376 105 HOH HOH . 
R 10 HOH A 77 7377 113 HOH HOH . 
R 10 HOH A 78 7378 188 HOH HOH . 
R 10 HOH A 79 7379 187 HOH HOH . 
R 10 HOH A 80 7380 164 HOH HOH . 
R 10 HOH A 81 7381 63 HOH HOH . 
R 10 HOH A 82 7382 153 HOH HOH . 
R 10 HOH A 83 7383 128 HOH HOH . 
R 10 HOH A 84 7384 58 HOH HOH . 
R 10 HOH A 85 7385 148 HOH HOH . 
R 10 HOH A 86 7386 118 HOH HOH . 
R 10 HOH A 87 7387 53 HOH HOH . 
R 10 HOH A 88 7388 175 HOH HOH . 
R 10 HOH A 89 7389 176 HOH HOH . 
R 10 HOH A 90 7390 108 HOH HOH . 
R 10 HOH A 91 7391 186 HOH HOH . 
R 10 HOH A 92 7392 136 HOH HOH . 
R 10 HOH A 93 7393 173 HOH HOH . 
R 10 HOH A 94 7394 124 HOH HOH . 
R 10 HOH A 95 7395 184 HOH HOH . 
R 10 HOH A 96 7396 163 HOH HOH . 
R 10 HOH A 97 7397 91 HOH HOH . 
R 10 HOH A 98 7398 170 HOH HOH . 
R 10 HOH A 99 7399 146 HOH HOH . 
R 10 HOH A 100 7400 155 HOH HOH . 
R 10 HOH A 101 7401 71 HOH HOH . 
R 10 HOH A 102 7402 127 HOH HOH . 
R 10 HOH A 103 7403 165 HOH HOH . 
R 10 HOH A 104 7404 81 HOH HOH . 
R 10 HOH A 105 7405 88 HOH HOH . 
R 10 HOH A 106 7406 142 HOH HOH . 
R 10 HOH A 107 7407 159 HOH HOH . 
R 10 HOH A 108 7408 143 HOH HOH . 
R 10 HOH A 109 7409 149 HOH HOH . 
R 10 HOH A 110 7410 174 HOH HOH . 
R 10 HOH A 111 7411 38 HOH HOH . 
R 10 HOH A 112 7412 90 HOH HOH . 
R 10 HOH A 113 7413 87 HOH HOH . 
R 10 HOH A 114 7414 96 HOH HOH . 
R 10 HOH A 115 7415 94 HOH HOH . 
R 10 HOH A 116 7416 166 HOH HOH . 
R 10 HOH A 117 7417 181 HOH HOH . 
R 10 HOH A 118 7418 154 HOH HOH . 
R 10 HOH A 119 7419 183 HOH HOH . 
R 10 HOH A 120 7420 185 HOH HOH . 
R 10 HOH A 121 7421 182 HOH HOH . 
S 10 HOH B 1 4501 62 HOH HOH . 
S 10 HOH B 2 4502 172 HOH HOH . 
S 10 HOH B 3 4503 46 HOH HOH . 
S 10 HOH B 4 4504 137 HOH HOH . 
S 10 HOH B 5 4505 64 HOH HOH . 
S 10 HOH B 6 4506 42 HOH HOH . 
S 10 HOH B 7 4507 74 HOH HOH . 
S 10 HOH B 8 4508 39 HOH HOH . 
S 10 HOH B 9 4509 10 HOH HOH . 
S 10 HOH B 10 4510 22 HOH HOH . 
S 10 HOH B 11 4511 24 HOH HOH . 
S 10 HOH B 12 4512 28 HOH HOH . 
S 10 HOH B 13 4513 36 HOH HOH . 
S 10 HOH B 14 4514 107 HOH HOH . 
S 10 HOH B 15 4515 83 HOH HOH . 
S 10 HOH B 16 4516 104 HOH HOH . 
S 10 HOH B 17 4517 70 HOH HOH . 
S 10 HOH B 18 4518 54 HOH HOH . 
S 10 HOH B 19 4519 43 HOH HOH . 
S 10 HOH B 20 4520 67 HOH HOH . 
S 10 HOH B 21 4521 85 HOH HOH . 
S 10 HOH B 22 4522 130 HOH HOH . 
S 10 HOH B 23 4523 162 HOH HOH . 
S 10 HOH B 24 4524 156 HOH HOH . 
S 10 HOH B 25 4525 160 HOH HOH . 
S 10 HOH B 26 4526 169 HOH HOH . 
S 10 HOH B 27 4527 61 HOH HOH . 
S 10 HOH B 28 4528 168 HOH HOH . 
S 10 HOH B 29 4529 161 HOH HOH . 
S 10 HOH B 30 4530 116 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . J 7 -60.349 19.191 3.229 1 84.93 ? C1 EDO 7208 A 1 
HETATM 2 O O1 EDO . . . J 7 -60.427 19.807 1.928 1 82.99 ? O1 EDO 7208 A 1 
HETATM 3 C C2 EDO . . . J 7 -61.755 18.918 3.767 1 86.33 ? C2 EDO 7208 A 1 
HETATM 4 O O2 EDO . . . J 7 -62.746 19.432 2.869 1 70.61 ? O2 EDO 7208 A 1 
HETATM 5 H H11 EDO . . . J 7 -59.813 19.849 3.916 1 101.91 ? H11 EDO 7208 A 1 
HETATM 6 H H12 EDO . . . J 7 -59.793 18.253 3.159 1 101.91 ? H12 EDO 7208 A 1 
HETATM 7 H HO1 EDO . . . J 7 -59.544 20.088 1.651 1 99.59 ? HO1 EDO 7208 A 1 
HETATM 8 H H21 EDO . . . J 7 -61.869 19.388 4.746 1 103.6 ? H21 EDO 7208 A 1 
HETATM 9 H H22 EDO . . . J 7 -61.897 17.843 3.892 1 103.6 ? H22 EDO 7208 A 1 
HETATM 10 H HO2 EDO . . . J 7 -63.627 19.248 3.221 1 84.73 ? HO2 EDO 7208 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#