data_9EMW
#
_model_server_result.job_id            HLRZsGi01Wq-aQFYujoQ7A 
_model_server_result.datetime_utc      '2025-07-20 02:51:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9emw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    9EMW 
#
_exptl.entry_id    9EMW 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              266.253 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9EMW 
_cell.length_a            135.76 
_cell.length_b            135.76 
_cell.length_c            87.55 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9EMW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C11 H14 N4 O4' 
_chem_comp.formula_weight    266.253 
_chem_comp.id                IMH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Forodesine;Immucillin H' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5' C5' IMH sing 173 n n 
O5' "HO'5" IMH sing 174 n n 
C5' C4' IMH sing 175 n n 
C5' "H5'1" IMH sing 176 n n 
C5' "H5'2" IMH sing 177 n n 
C4' N4' IMH sing 178 n n 
C4' C3' IMH sing 179 n n 
C4' H4' IMH sing 180 n n 
N4' C1' IMH sing 181 n n 
N4' "HN'4" IMH sing 182 n n 
C3' O3' IMH sing 183 n n 
C3' C2' IMH sing 184 n n 
C3' H3' IMH sing 185 n n 
O3' "HO'3" IMH sing 186 n n 
C2' O2' IMH sing 187 n n 
C2' C1' IMH sing 188 n n 
C2' H2' IMH sing 189 n n 
O2' "HO'2" IMH sing 190 n n 
C1' C9 IMH sing 191 n n 
C1' H1' IMH sing 192 n n 
C9 C8 IMH doub 193 n y 
C9 C4 IMH sing 194 n y 
C8 N7 IMH sing 195 n y 
C8 H8 IMH sing 196 n n 
N7 C5 IMH sing 197 n y 
N7 HN7 IMH sing 198 n n 
C5 C6 IMH sing 199 n n 
C5 C4 IMH doub 200 n y 
C6 O6 IMH doub 201 n n 
C6 N1 IMH sing 202 n n 
N1 C2 IMH sing 203 n n 
C2 N3 IMH doub 204 n n 
C2 H2 IMH sing 205 n n 
N3 C4 IMH sing 206 n n 
N1 H1 IMH sing 207 n n 
#
_atom_sites.entry_id                     9EMW 
_atom_sites.fract_transf_matrix[1][1]    0.007366 
_atom_sites.fract_transf_matrix[1][2]    0.004253 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008505 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011422 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 IMH A 1 201 202 IMH IMH . 
F 2 IMH B 1 201 202 IMH IMH . 
G 2 IMH C 1 201 202 IMH IMH . 
H 2 IMH D 1 201 202 IMH IMH . 
I 3 HOH A 1 301 36 HOH HOH . 
I 3 HOH A 2 302 43 HOH HOH . 
I 3 HOH A 3 303 8 HOH HOH . 
I 3 HOH A 4 304 7 HOH HOH . 
I 3 HOH A 5 305 22 HOH HOH . 
I 3 HOH A 6 306 40 HOH HOH . 
I 3 HOH A 7 307 3 HOH HOH . 
I 3 HOH A 8 308 9 HOH HOH . 
I 3 HOH A 9 309 3 HOH HOH . 
I 3 HOH A 10 310 2 HOH HOH . 
I 3 HOH A 11 311 44 HOH HOH . 
I 3 HOH A 12 312 6 HOH HOH . 
I 3 HOH A 13 313 14 HOH HOH . 
I 3 HOH A 14 314 18 HOH HOH . 
J 3 HOH B 1 301 39 HOH HOH . 
J 3 HOH B 2 302 10 HOH HOH . 
J 3 HOH B 3 303 1 HOH HOH . 
J 3 HOH B 4 304 16 HOH HOH . 
J 3 HOH B 5 305 13 HOH HOH . 
J 3 HOH B 6 306 33 HOH HOH . 
J 3 HOH B 7 307 6 HOH HOH . 
J 3 HOH B 8 308 9 HOH HOH . 
J 3 HOH B 9 309 8 HOH HOH . 
J 3 HOH B 10 310 29 HOH HOH . 
J 3 HOH B 11 311 30 HOH HOH . 
J 3 HOH B 12 312 15 HOH HOH . 
J 3 HOH B 13 313 47 HOH HOH . 
J 3 HOH B 14 314 52 HOH HOH . 
J 3 HOH B 15 315 45 HOH HOH . 
K 3 HOH C 1 301 11 HOH HOH . 
K 3 HOH C 2 302 5 HOH HOH . 
K 3 HOH C 3 303 25 HOH HOH . 
K 3 HOH C 4 304 7 HOH HOH . 
K 3 HOH C 5 305 10 HOH HOH . 
K 3 HOH C 6 306 34 HOH HOH . 
K 3 HOH C 7 307 1 HOH HOH . 
K 3 HOH C 8 308 12 HOH HOH . 
K 3 HOH C 9 309 41 HOH HOH . 
K 3 HOH C 10 310 5 HOH HOH . 
K 3 HOH C 11 311 11 HOH HOH . 
K 3 HOH C 12 312 20 HOH HOH . 
K 3 HOH C 13 313 48 HOH HOH . 
K 3 HOH C 14 314 37 HOH HOH . 
K 3 HOH C 15 315 26 HOH HOH . 
K 3 HOH C 16 316 50 HOH HOH . 
L 3 HOH D 1 301 4 HOH HOH . 
L 3 HOH D 2 302 19 HOH HOH . 
L 3 HOH D 3 303 15 HOH HOH . 
L 3 HOH D 4 304 38 HOH HOH . 
L 3 HOH D 5 305 13 HOH HOH . 
L 3 HOH D 6 306 4 HOH HOH . 
L 3 HOH D 7 307 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' IMH . . . E 2 -55.726 16.573 -15.677 1 65.79 ? O5' IMH 201 A 1 
HETATM 2 C C5' IMH . . . E 2 -55.961 17.749 -14.922 1 67.47 ? C5' IMH 201 A 1 
HETATM 3 C C4' IMH . . . E 2 -56.178 17.409 -13.465 1 66.66 ? C4' IMH 201 A 1 
HETATM 4 N N4' IMH . . . E 2 -56.089 18.602 -12.604 1 78.39 ? N4' IMH 201 A 1 
HETATM 5 C C3' IMH . . . E 2 -57.582 16.862 -13.178 1 60.95 ? C3' IMH 201 A 1 
HETATM 6 O O3' IMH . . . E 2 -57.547 15.824 -12.212 1 43.79 ? O3' IMH 201 A 1 
HETATM 7 C C2' IMH . . . E 2 -58.371 18.066 -12.655 1 58.62 ? C2' IMH 201 A 1 
HETATM 8 O O2' IMH . . . E 2 -58.822 17.874 -11.326 1 22.74 ? O2' IMH 201 A 1 
HETATM 9 C C1' IMH . . . E 2 -57.394 19.262 -12.623 1 56.17 ? C1' IMH 201 A 1 
HETATM 10 C C9 IMH . . . E 2 -57.518 20.236 -13.741 1 121.59 ? C9 IMH 201 A 1 
HETATM 11 C C8 IMH . . . E 2 -56.518 21.021 -14.238 1 130.77 ? C8 IMH 201 A 1 
HETATM 12 N N7 IMH . . . E 2 -57.024 21.763 -15.26 1 155.35 ? N7 IMH 201 A 1 
HETATM 13 C C5 IMH . . . E 2 -58.348 21.438 -15.421 1 171.02 ? C5 IMH 201 A 1 
HETATM 14 C C6 IMH . . . E 2 -59.381 21.836 -16.273 1 131.3 ? C6 IMH 201 A 1 
HETATM 15 O O6 IMH . . . E 2 -59.154 22.761 -17.225 1 76.23 ? O6 IMH 201 A 1 
HETATM 16 N N1 IMH . . . E 2 -60.583 21.304 -16.149 1 118.04 ? N1 IMH 201 A 1 
HETATM 17 C C2 IMH . . . E 2 -60.778 20.38 -15.179 1 94.65 ? C2 IMH 201 A 1 
HETATM 18 N N3 IMH . . . E 2 -59.894 19.938 -14.34 1 113.4 ? N3 IMH 201 A 1 
HETATM 19 C C4 IMH . . . E 2 -58.655 20.474 -14.463 1 150.36 ? C4 IMH 201 A 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           447 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           19 
#