data_9EMW # _model_server_result.job_id -lhI1iDT97EzQTLVVYzrIg _model_server_result.datetime_utc '2025-07-17 01:17:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9emw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 9EMW # _exptl.entry_id 9EMW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.253 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9EMW _cell.length_a 135.76 _cell.length_b 135.76 _cell.length_c 87.55 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9EMW _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C11 H14 N4 O4' _chem_comp.formula_weight 266.253 _chem_comp.id IMH _chem_comp.mon_nstd_flag . _chem_comp.name 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Forodesine;Immucillin H' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' IMH sing 173 n n O5' "HO'5" IMH sing 174 n n C5' C4' IMH sing 175 n n C5' "H5'1" IMH sing 176 n n C5' "H5'2" IMH sing 177 n n C4' N4' IMH sing 178 n n C4' C3' IMH sing 179 n n C4' H4' IMH sing 180 n n N4' C1' IMH sing 181 n n N4' "HN'4" IMH sing 182 n n C3' O3' IMH sing 183 n n C3' C2' IMH sing 184 n n C3' H3' IMH sing 185 n n O3' "HO'3" IMH sing 186 n n C2' O2' IMH sing 187 n n C2' C1' IMH sing 188 n n C2' H2' IMH sing 189 n n O2' "HO'2" IMH sing 190 n n C1' C9 IMH sing 191 n n C1' H1' IMH sing 192 n n C9 C8 IMH doub 193 n y C9 C4 IMH sing 194 n y C8 N7 IMH sing 195 n y C8 H8 IMH sing 196 n n N7 C5 IMH sing 197 n y N7 HN7 IMH sing 198 n n C5 C6 IMH sing 199 n n C5 C4 IMH doub 200 n y C6 O6 IMH doub 201 n n C6 N1 IMH sing 202 n n N1 C2 IMH sing 203 n n C2 N3 IMH doub 204 n n C2 H2 IMH sing 205 n n N3 C4 IMH sing 206 n n N1 H1 IMH sing 207 n n # _atom_sites.entry_id 9EMW _atom_sites.fract_transf_matrix[1][1] 0.007366 _atom_sites.fract_transf_matrix[1][2] 0.004253 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011422 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 IMH A 1 201 202 IMH IMH . F 2 IMH B 1 201 202 IMH IMH . G 2 IMH C 1 201 202 IMH IMH . H 2 IMH D 1 201 202 IMH IMH . I 3 HOH A 1 301 36 HOH HOH . I 3 HOH A 2 302 43 HOH HOH . I 3 HOH A 3 303 8 HOH HOH . I 3 HOH A 4 304 7 HOH HOH . I 3 HOH A 5 305 22 HOH HOH . I 3 HOH A 6 306 40 HOH HOH . I 3 HOH A 7 307 3 HOH HOH . I 3 HOH A 8 308 9 HOH HOH . I 3 HOH A 9 309 3 HOH HOH . I 3 HOH A 10 310 2 HOH HOH . I 3 HOH A 11 311 44 HOH HOH . I 3 HOH A 12 312 6 HOH HOH . I 3 HOH A 13 313 14 HOH HOH . I 3 HOH A 14 314 18 HOH HOH . J 3 HOH B 1 301 39 HOH HOH . J 3 HOH B 2 302 10 HOH HOH . J 3 HOH B 3 303 1 HOH HOH . J 3 HOH B 4 304 16 HOH HOH . J 3 HOH B 5 305 13 HOH HOH . J 3 HOH B 6 306 33 HOH HOH . J 3 HOH B 7 307 6 HOH HOH . J 3 HOH B 8 308 9 HOH HOH . J 3 HOH B 9 309 8 HOH HOH . J 3 HOH B 10 310 29 HOH HOH . J 3 HOH B 11 311 30 HOH HOH . J 3 HOH B 12 312 15 HOH HOH . J 3 HOH B 13 313 47 HOH HOH . J 3 HOH B 14 314 52 HOH HOH . J 3 HOH B 15 315 45 HOH HOH . K 3 HOH C 1 301 11 HOH HOH . K 3 HOH C 2 302 5 HOH HOH . K 3 HOH C 3 303 25 HOH HOH . K 3 HOH C 4 304 7 HOH HOH . K 3 HOH C 5 305 10 HOH HOH . K 3 HOH C 6 306 34 HOH HOH . K 3 HOH C 7 307 1 HOH HOH . K 3 HOH C 8 308 12 HOH HOH . K 3 HOH C 9 309 41 HOH HOH . K 3 HOH C 10 310 5 HOH HOH . K 3 HOH C 11 311 11 HOH HOH . K 3 HOH C 12 312 20 HOH HOH . K 3 HOH C 13 313 48 HOH HOH . K 3 HOH C 14 314 37 HOH HOH . K 3 HOH C 15 315 26 HOH HOH . K 3 HOH C 16 316 50 HOH HOH . L 3 HOH D 1 301 4 HOH HOH . L 3 HOH D 2 302 19 HOH HOH . L 3 HOH D 3 303 15 HOH HOH . L 3 HOH D 4 304 38 HOH HOH . L 3 HOH D 5 305 13 HOH HOH . L 3 HOH D 6 306 4 HOH HOH . L 3 HOH D 7 307 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' IMH . . . F 2 -46.337 4.294 -29.734 1 62.4 ? O5' IMH 201 B 1 HETATM 2 C C5' IMH . . . F 2 -45.353 3.638 -30.515 1 89.38 ? C5' IMH 201 B 1 HETATM 3 C C4' IMH . . . F 2 -45.752 3.556 -31.974 1 79.07 ? C4' IMH 201 B 1 HETATM 4 N N4' IMH . . . F 2 -45.412 2.258 -32.593 1 38.58 ? N4' IMH 201 B 1 HETATM 5 C C3' IMH . . . F 2 -47.259 3.593 -32.175 1 71.87 ? C3' IMH 201 B 1 HETATM 6 O O3' IMH . . . F 2 -47.617 3.725 -33.539 1 62.2 ? O3' IMH 201 B 1 HETATM 7 C C2' IMH . . . F 2 -47.585 2.194 -31.662 1 75.05 ? C2' IMH 201 B 1 HETATM 8 O O2' IMH . . . F 2 -48.895 1.798 -32.031 1 127.93 ? O2' IMH 201 B 1 HETATM 9 C C1' IMH . . . F 2 -46.502 1.315 -32.326 1 67.42 ? C1' IMH 201 B 1 HETATM 10 C C9 IMH . . . F 2 -46.056 0.223 -31.419 1 97.83 ? C9 IMH 201 B 1 HETATM 11 C C8 IMH . . . F 2 -46.709 -0.93 -31.08 1 141.15 ? C8 IMH 201 B 1 HETATM 12 N N7 IMH . . . F 2 -45.936 -1.631 -30.201 1 156.35 ? N7 IMH 201 B 1 HETATM 13 C C5 IMH . . . F 2 -44.784 -0.916 -29.984 1 186.73 ? C5 IMH 201 B 1 HETATM 14 C C6 IMH . . . F 2 -43.623 -1.076 -29.219 1 180.04 ? C6 IMH 201 B 1 HETATM 15 O O6 IMH . . . F 2 -43.442 -2.16 -28.446 1 85.5 ? O6 IMH 201 B 1 HETATM 16 N N1 IMH . . . F 2 -42.674 -0.156 -29.253 1 183.71 ? N1 IMH 201 B 1 HETATM 17 C C2 IMH . . . F 2 -42.863 0.931 -30.032 1 145.22 ? C2 IMH 201 B 1 HETATM 18 N N3 IMH . . . F 2 -43.887 1.171 -30.785 1 132.36 ? N3 IMH 201 B 1 HETATM 19 C C4 IMH . . . F 2 -44.87 0.242 -30.753 1 143.48 ? C4 IMH 201 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 370 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #