data_9EO4
#
_model_server_result.job_id            5lOktgu3E_nNSc9qLiZZgw 
_model_server_result.datetime_utc      '2024-11-18 02:58:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9eo4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":703}' 
#
_entry.id    9EO4 
#
_exptl.entry_id    9EO4 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              386.654 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CHOLESTEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9EO4 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9EO4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 D N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 180 B CYS 180 1_555 A SG CYS 189 B CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc1 A O GLY 75 B GLY 75 1_555 F NA NA . B NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc2 A O VAL 78 B VAL 78 1_555 F NA NA . B NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc3 A O LEU 418 B LEU 418 1_555 F NA NA . B NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? 
metalc ? metalc4 A OD1 ASP 421 B ASP 421 1_555 F NA NA . B NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? 
metalc ? metalc5 A OG SER 422 B SER 422 1_555 F NA NA . B NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
#
_chem_comp.formula           'C27 H46 O' 
_chem_comp.formula_weight    386.654 
_chem_comp.id                CLR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CHOLESTEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 CLR sing 70 n n 
C1 C10 CLR sing 71 n n 
C1 H11 CLR sing 72 n n 
C1 H12 CLR sing 73 n n 
C2 C3 CLR sing 74 n n 
C2 H21 CLR sing 75 n n 
C2 H22 CLR sing 76 n n 
C3 C4 CLR sing 77 n n 
C3 O1 CLR sing 78 n n 
C3 H3 CLR sing 79 n n 
C4 C5 CLR sing 80 n n 
C4 H41 CLR sing 81 n n 
C4 H42 CLR sing 82 n n 
C5 C6 CLR doub 83 n n 
C5 C10 CLR sing 84 n n 
C6 C7 CLR sing 85 n n 
C6 H6 CLR sing 86 n n 
C7 C8 CLR sing 87 n n 
C7 H71 CLR sing 88 n n 
C7 H72 CLR sing 89 n n 
C8 C9 CLR sing 90 n n 
C8 C14 CLR sing 91 n n 
C8 H8 CLR sing 92 n n 
C9 C10 CLR sing 93 n n 
C9 C11 CLR sing 94 n n 
C9 H9 CLR sing 95 n n 
C10 C19 CLR sing 96 n n 
C11 C12 CLR sing 97 n n 
C11 H111 CLR sing 98 n n 
C11 H112 CLR sing 99 n n 
C12 C13 CLR sing 100 n n 
C12 H121 CLR sing 101 n n 
C12 H122 CLR sing 102 n n 
C13 C14 CLR sing 103 n n 
C13 C17 CLR sing 104 n n 
C13 C18 CLR sing 105 n n 
C14 C15 CLR sing 106 n n 
C14 H14 CLR sing 107 n n 
C15 C16 CLR sing 108 n n 
C15 H151 CLR sing 109 n n 
C15 H152 CLR sing 110 n n 
C16 C17 CLR sing 111 n n 
C16 H161 CLR sing 112 n n 
C16 H162 CLR sing 113 n n 
C17 C20 CLR sing 114 n n 
C17 H17 CLR sing 115 n n 
C18 H181 CLR sing 116 n n 
C18 H182 CLR sing 117 n n 
C18 H183 CLR sing 118 n n 
C19 H191 CLR sing 119 n n 
C19 H192 CLR sing 120 n n 
C19 H193 CLR sing 121 n n 
C20 C21 CLR sing 122 n n 
C20 C22 CLR sing 123 n n 
C20 H20 CLR sing 124 n n 
C21 H211 CLR sing 125 n n 
C21 H212 CLR sing 126 n n 
C21 H213 CLR sing 127 n n 
C22 C23 CLR sing 128 n n 
C22 H221 CLR sing 129 n n 
C22 H222 CLR sing 130 n n 
C23 C24 CLR sing 131 n n 
C23 H231 CLR sing 132 n n 
C23 H232 CLR sing 133 n n 
C24 C25 CLR sing 134 n n 
C24 H241 CLR sing 135 n n 
C24 H242 CLR sing 136 n n 
C25 C26 CLR sing 137 n n 
C25 C27 CLR sing 138 n n 
C25 H25 CLR sing 139 n n 
C26 H261 CLR sing 140 n n 
C26 H262 CLR sing 141 n n 
C26 H263 CLR sing 142 n n 
C27 H271 CLR sing 143 n n 
C27 H272 CLR sing 144 n n 
C27 H273 CLR sing 145 n n 
O1 H1 CLR sing 146 n n 
#
_atom_sites.entry_id                     9EO4 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CLR B 1 701 701 CLR CLR . 
C 3 Y01 B 1 702 702 Y01 Y01 . 
D 2 CLR B 1 703 705 CLR CLR . 
E 2 CLR B 1 704 706 CLR CLR . 
F 4 NA B 1 705 1 NA NA . 
G 5 CL B 1 706 1 CL CL . 
H 6 COC B 1 707 1 COC COC . 
I 7 HOH B 1 801 1 HOH HOH . 
I 7 HOH B 2 802 3 HOH HOH . 
I 7 HOH B 3 803 2 HOH HOH . 
I 7 HOH B 4 804 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CLR . . . D 2 114.994 105.124 125.586 1 20 ? C1 CLR 703 B 1 
HETATM 2 C C2 CLR . . . D 2 114.912 103.653 125.131 1 20 ? C2 CLR 703 B 1 
HETATM 3 C C3 CLR . . . D 2 114.037 102.83 126.076 1 20 ? C3 CLR 703 B 1 
HETATM 4 C C4 CLR . . . D 2 114.25 103.302 127.521 1 20 ? C4 CLR 703 B 1 
HETATM 5 C C5 CLR . . . D 2 115.59 103.997 127.705 1 20 ? C5 CLR 703 B 1 
HETATM 6 C C6 CLR . . . D 2 116.55 103.485 128.466 1 20 ? C6 CLR 703 B 1 
HETATM 7 C C7 CLR . . . D 2 117.997 103.861 128.355 1 20 ? C7 CLR 703 B 1 
HETATM 8 C C8 CLR . . . D 2 118.155 105.329 127.935 1 20 ? C8 CLR 703 B 1 
HETATM 9 C C9 CLR . . . D 2 117.274 105.608 126.694 1 20 ? C9 CLR 703 B 1 
HETATM 10 C C10 CLR . . . D 2 115.75 105.311 126.938 1 20 ? C10 CLR 703 B 1 
HETATM 11 C C11 CLR . . . D 2 117.557 107.014 126.113 1 20 ? C11 CLR 703 B 1 
HETATM 12 C C12 CLR . . . D 2 119.054 107.311 125.879 1 20 ? C12 CLR 703 B 1 
HETATM 13 C C13 CLR . . . D 2 119.879 107.14 127.17 1 20 ? C13 CLR 703 B 1 
HETATM 14 C C14 CLR . . . D 2 119.618 105.683 127.648 1 20 ? C14 CLR 703 B 1 
HETATM 15 C C15 CLR . . . D 2 120.658 105.467 128.751 1 20 ? C15 CLR 703 B 1 
HETATM 16 C C16 CLR . . . D 2 121.906 106.254 128.236 1 20 ? C16 CLR 703 B 1 
HETATM 17 C C17 CLR . . . D 2 121.443 107.119 127.014 1 20 ? C17 CLR 703 B 1 
HETATM 18 C C18 CLR . . . D 2 119.467 108.208 128.222 1 20 ? C18 CLR 703 B 1 
HETATM 19 C C19 CLR . . . D 2 115.082 106.427 127.782 1 20 ? C19 CLR 703 B 1 
HETATM 20 C C20 CLR . . . D 2 122.256 108.438 126.878 1 20 ? C20 CLR 703 B 1 
HETATM 21 C C21 CLR . . . D 2 121.723 109.368 125.772 1 20 ? C21 CLR 703 B 1 
HETATM 22 C C22 CLR . . . D 2 123.766 108.148 126.66 1 20 ? C22 CLR 703 B 1 
HETATM 23 C C23 CLR . . . D 2 124.687 108.208 127.911 1 20 ? C23 CLR 703 B 1 
HETATM 24 C C24 CLR . . . D 2 126.157 107.834 127.587 1 20 ? C24 CLR 703 B 1 
HETATM 25 C C25 CLR . . . D 2 127.081 107.556 128.814 1 20 ? C25 CLR 703 B 1 
HETATM 26 C C26 CLR . . . D 2 127.285 108.842 129.651 1 20 ? C26 CLR 703 B 1 
HETATM 27 C C27 CLR . . . D 2 128.448 106.978 128.359 1 20 ? C27 CLR 703 B 1 
HETATM 28 O O1 CLR . . . D 2 112.643 102.914 125.703 1 20 ? O1 CLR 703 B 1 
HETATM 29 H H11 CLR . . . D 2 115.433 105.666 124.892 1 20 ? H11 CLR 703 B 1 
HETATM 30 H H12 CLR . . . D 2 114.08 105.479 125.675 1 20 ? H12 CLR 703 B 1 
HETATM 31 H H21 CLR . . . D 2 114.555 103.597 124.211 1 20 ? H21 CLR 703 B 1 
HETATM 32 H H22 CLR . . . D 2 115.827 103.282 125.093 1 20 ? H22 CLR 703 B 1 
HETATM 33 H H3 CLR . . . D 2 114.291 101.863 126.001 1 20 ? H3 CLR 703 B 1 
HETATM 34 H H41 CLR . . . D 2 114.173 102.553 128.156 1 20 ? H41 CLR 703 B 1 
HETATM 35 H H42 CLR . . . D 2 113.547 103.941 127.768 1 20 ? H42 CLR 703 B 1 
HETATM 36 H H6 CLR . . . D 2 116.295 102.844 129.119 1 20 ? H6 CLR 703 B 1 
HETATM 37 H H71 CLR . . . D 2 118.418 103.286 127.68 1 20 ? H71 CLR 703 B 1 
HETATM 38 H H72 CLR . . . D 2 118.463 103.699 129.209 1 20 ? H72 CLR 703 B 1 
HETATM 39 H H8 CLR . . . D 2 117.835 105.914 128.678 1 20 ? H8 CLR 703 B 1 
HETATM 40 H H9 CLR . . . D 2 117.575 104.954 126.007 1 20 ? H9 CLR 703 B 1 
HETATM 41 H H111 CLR . . . D 2 117.192 107.684 126.726 1 20 ? H111 CLR 703 B 1 
HETATM 42 H H112 CLR . . . D 2 117.065 107.118 125.271 1 20 ? H112 CLR 703 B 1 
HETATM 43 H H121 CLR . . . D 2 119.172 108.234 125.533 1 20 ? H121 CLR 703 B 1 
HETATM 44 H H122 CLR . . . D 2 119.412 106.699 125.185 1 20 ? H122 CLR 703 B 1 
HETATM 45 H H14 CLR . . . D 2 119.884 105.083 126.875 1 20 ? H14 CLR 703 B 1 
HETATM 46 H H151 CLR . . . D 2 120.851 104.503 128.898 1 20 ? H151 CLR 703 B 1 
HETATM 47 H H152 CLR . . . D 2 120.317 105.827 129.607 1 20 ? H152 CLR 703 B 1 
HETATM 48 H H161 CLR . . . D 2 122.643 105.644 127.985 1 20 ? H161 CLR 703 B 1 
HETATM 49 H H162 CLR . . . D 2 122.258 106.844 128.941 1 20 ? H162 CLR 703 B 1 
HETATM 50 H H17 CLR . . . D 2 121.62 106.603 126.174 1 20 ? H17 CLR 703 B 1 
HETATM 51 H H181 CLR . . . D 2 119.462 109.083 127.812 1 20 ? H181 CLR 703 B 1 
HETATM 52 H H182 CLR . . . D 2 120.091 108.221 128.971 1 20 ? H182 CLR 703 B 1 
HETATM 53 H H183 CLR . . . D 2 118.577 108.026 128.565 1 20 ? H183 CLR 703 B 1 
HETATM 54 H H191 CLR . . . D 2 114.993 107.234 127.255 1 20 ? H191 CLR 703 B 1 
HETATM 55 H H192 CLR . . . D 2 115.629 106.619 128.556 1 20 ? H192 CLR 703 B 1 
HETATM 56 H H193 CLR . . . D 2 114.199 106.154 128.079 1 20 ? H193 CLR 703 B 1 
HETATM 57 H H20 CLR . . . D 2 122.175 108.92 127.762 1 20 ? H20 CLR 703 B 1 
HETATM 58 H H211 CLR . . . D 2 121.726 108.896 124.92 1 20 ? H211 CLR 703 B 1 
HETATM 59 H H212 CLR . . . D 2 122.282 110.166 125.691 1 20 ? H212 CLR 703 B 1 
HETATM 60 H H213 CLR . . . D 2 120.813 109.648 125.966 1 20 ? H213 CLR 703 B 1 
HETATM 61 H H221 CLR . . . D 2 124.127 108.787 125.995 1 20 ? H221 CLR 703 B 1 
HETATM 62 H H222 CLR . . . D 2 123.861 107.254 126.248 1 20 ? H222 CLR 703 B 1 
HETATM 63 H H231 CLR . . . D 2 124.348 107.592 128.604 1 20 ? H231 CLR 703 B 1 
HETATM 64 H H232 CLR . . . D 2 124.649 109.118 128.309 1 20 ? H232 CLR 703 B 1 
HETATM 65 H H241 CLR . . . D 2 126.565 108.558 127.049 1 20 ? H241 CLR 703 B 1 
HETATM 66 H H242 CLR . . . D 2 126.154 107.03 127.007 1 20 ? H242 CLR 703 B 1 
HETATM 67 H H25 CLR . . . D 2 126.614 106.867 129.392 1 20 ? H25 CLR 703 B 1 
HETATM 68 H H261 CLR . . . D 2 127.603 109.552 129.075 1 20 ? H261 CLR 703 B 1 
HETATM 69 H H262 CLR . . . D 2 127.949 108.687 130.347 1 20 ? H262 CLR 703 B 1 
HETATM 70 H H263 CLR . . . D 2 126.446 109.128 130.066 1 20 ? H263 CLR 703 B 1 
HETATM 71 H H271 CLR . . . D 2 128.955 107.668 127.891 1 20 ? H271 CLR 703 B 1 
HETATM 72 H H272 CLR . . . D 2 128.314 106.223 127.754 1 20 ? H272 CLR 703 B 1 
HETATM 73 H H273 CLR . . . D 2 128.966 106.676 129.131 1 20 ? H273 CLR 703 B 1 
HETATM 74 H H1 CLR . . . D 2 112.308 103.694 125.729 1 20 ? H1 CLR 703 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           74 
#