data_9EO4 # _model_server_result.job_id zO56uc9s6W61YKVeSbJ6NA _model_server_result.datetime_utc '2024-11-18 02:31:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9eo4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":704}' # _entry.id 9EO4 # _exptl.entry_id 9EO4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9EO4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9EO4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 180 B CYS 180 1_555 A SG CYS 189 B CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A O GLY 75 B GLY 75 1_555 F NA NA . B NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc2 A O VAL 78 B VAL 78 1_555 F NA NA . B NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc3 A O LEU 418 B LEU 418 1_555 F NA NA . B NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc4 A OD1 ASP 421 B ASP 421 1_555 F NA NA . B NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc5 A OG SER 422 B SER 422 1_555 F NA NA . B NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 9EO4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CLR B 1 701 701 CLR CLR . C 3 Y01 B 1 702 702 Y01 Y01 . D 2 CLR B 1 703 705 CLR CLR . E 2 CLR B 1 704 706 CLR CLR . F 4 NA B 1 705 1 NA NA . G 5 CL B 1 706 1 CL CL . H 6 COC B 1 707 1 COC COC . I 7 HOH B 1 801 1 HOH HOH . I 7 HOH B 2 802 3 HOH HOH . I 7 HOH B 3 803 2 HOH HOH . I 7 HOH B 4 804 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . E 2 142.614 105.991 129.539 1 20 ? C1 CLR 704 B 1 HETATM 2 C C2 CLR . . . E 2 144.02 105.369 129.65 1 20 ? C2 CLR 704 B 1 HETATM 3 C C3 CLR . . . E 2 144.185 104.271 128.611 1 20 ? C3 CLR 704 B 1 HETATM 4 C C4 CLR . . . E 2 143.942 104.857 127.222 1 20 ? C4 CLR 704 B 1 HETATM 5 C C5 CLR . . . E 2 142.612 105.594 127.093 1 20 ? C5 CLR 704 B 1 HETATM 6 C C6 CLR . . . E 2 141.79 105.35 126.08 1 20 ? C6 CLR 704 B 1 HETATM 7 C C7 CLR . . . E 2 140.351 105.763 126.059 1 20 ? C7 CLR 704 B 1 HETATM 8 C C8 CLR . . . E 2 140.174 107.129 126.73 1 20 ? C8 CLR 704 B 1 HETATM 9 C C9 CLR . . . E 2 140.807 107.113 128.138 1 20 ? C9 CLR 704 B 1 HETATM 10 C C10 CLR . . . E 2 142.311 106.651 128.164 1 20 ? C10 CLR 704 B 1 HETATM 11 C C11 CLR . . . E 2 140.538 108.461 128.853 1 20 ? C11 CLR 704 B 1 HETATM 12 C C12 CLR . . . E 2 139.041 108.849 128.879 1 20 ? C12 CLR 704 B 1 HETATM 13 C C13 CLR . . . E 2 138.419 108.909 127.47 1 20 ? C13 CLR 704 B 1 HETATM 14 C C14 CLR . . . E 2 138.697 107.522 126.83 1 20 ? C14 CLR 704 B 1 HETATM 15 C C15 CLR . . . E 2 137.84 107.523 125.561 1 20 ? C15 CLR 704 B 1 HETATM 16 C C16 CLR . . . E 2 136.582 108.357 125.963 1 20 ? C16 CLR 704 B 1 HETATM 17 C C17 CLR . . . E 2 136.85 108.942 127.392 1 20 ? C17 CLR 704 B 1 HETATM 18 C C18 CLR . . . E 2 139.02 110.099 126.661 1 20 ? C18 CLR 704 B 1 HETATM 19 C C19 CLR . . . E 2 143.261 107.849 127.903 1 20 ? C19 CLR 704 B 1 HETATM 20 C C20 CLR . . . E 2 136.071 110.257 127.689 1 20 ? C20 CLR 704 B 1 HETATM 21 C C21 CLR . . . E 2 136.12 110.672 129.174 1 20 ? C21 CLR 704 B 1 HETATM 22 C C22 CLR . . . E 2 134.605 110.19 127.179 1 20 ? C22 CLR 704 B 1 HETATM 23 C C23 CLR . . . E 2 134.32 110.889 125.794 1 20 ? C23 CLR 704 B 1 HETATM 24 C C24 CLR . . . E 2 132.972 110.462 125.129 1 20 ? C24 CLR 704 B 1 HETATM 25 C C25 CLR . . . E 2 132.829 108.945 124.74 1 20 ? C25 CLR 704 B 1 HETATM 26 C C26 CLR . . . E 2 133.682 108.606 123.489 1 20 ? C26 CLR 704 B 1 HETATM 27 C C27 CLR . . . E 2 131.344 108.558 124.504 1 20 ? C27 CLR 704 B 1 HETATM 28 O O1 CLR . . . E 2 145.484 103.646 128.7 1 20 ? O1 CLR 704 B 1 HETATM 29 H H11 CLR . . . E 2 141.946 105.286 129.697 1 20 ? H11 CLR 704 B 1 HETATM 30 H H12 CLR . . . E 2 142.477 106.659 130.243 1 20 ? H12 CLR 704 B 1 HETATM 31 H H21 CLR . . . E 2 144.704 106.061 129.505 1 20 ? H21 CLR 704 B 1 HETATM 32 H H22 CLR . . . E 2 144.172 105.007 130.558 1 20 ? H22 CLR 704 B 1 HETATM 33 H H3 CLR . . . E 2 143.499 103.565 128.782 1 20 ? H3 CLR 704 B 1 HETATM 34 H H41 CLR . . . E 2 143.994 104.145 126.544 1 20 ? H41 CLR 704 B 1 HETATM 35 H H42 CLR . . . E 2 144.663 105.486 127.018 1 20 ? H42 CLR 704 B 1 HETATM 36 H H6 CLR . . . E 2 142.147 104.903 125.321 1 20 ? H6 CLR 704 B 1 HETATM 37 H H71 CLR . . . E 2 139.824 105.092 126.544 1 20 ? H71 CLR 704 B 1 HETATM 38 H H72 CLR . . . E 2 140.011 105.79 125.134 1 20 ? H72 CLR 704 B 1 HETATM 39 H H8 CLR . . . E 2 140.651 107.821 126.195 1 20 ? H8 CLR 704 B 1 HETATM 40 H H9 CLR . . . E 2 140.294 106.426 128.642 1 20 ? H9 CLR 704 B 1 HETATM 41 H H111 CLR . . . E 2 141.033 109.166 128.388 1 20 ? H111 CLR 704 B 1 HETATM 42 H H112 CLR . . . E 2 140.9 108.431 129.767 1 20 ? H112 CLR 704 B 1 HETATM 43 H H121 CLR . . . E 2 138.917 109.724 129.326 1 20 ? H121 CLR 704 B 1 HETATM 44 H H122 CLR . . . E 2 138.54 108.185 129.41 1 20 ? H122 CLR 704 B 1 HETATM 45 H H14 CLR . . . E 2 138.288 106.835 127.456 1 20 ? H14 CLR 704 B 1 HETATM 46 H H151 CLR . . . E 2 137.609 106.602 125.263 1 20 ? H151 CLR 704 B 1 HETATM 47 H H152 CLR . . . E 2 138.341 107.944 124.829 1 20 ? H152 CLR 704 B 1 HETATM 48 H H161 CLR . . . E 2 135.76 107.807 125.946 1 20 ? H161 CLR 704 B 1 HETATM 49 H H162 CLR . . . E 2 136.443 109.089 125.325 1 20 ? H162 CLR 704 B 1 HETATM 50 H H17 CLR . . . E 2 136.525 108.278 128.068 1 20 ? H17 CLR 704 B 1 HETATM 51 H H181 CLR . . . E 2 138.867 110.932 127.143 1 20 ? H181 CLR 704 B 1 HETATM 52 H H182 CLR . . . E 2 138.607 110.17 125.782 1 20 ? H182 CLR 704 B 1 HETATM 53 H H183 CLR . . . E 2 139.978 109.982 126.541 1 20 ? H183 CLR 704 B 1 HETATM 54 H H191 CLR . . . E 2 142.972 108.334 127.113 1 20 ? H191 CLR 704 B 1 HETATM 55 H H192 CLR . . . E 2 144.167 107.546 127.763 1 20 ? H192 CLR 704 B 1 HETATM 56 H H193 CLR . . . E 2 143.258 108.454 128.66 1 20 ? H193 CLR 704 B 1 HETATM 57 H H20 CLR . . . E 2 136.518 110.971 127.158 1 20 ? H20 CLR 704 B 1 HETATM 58 H H211 CLR . . . E 2 135.77 109.947 129.726 1 20 ? H211 CLR 704 B 1 HETATM 59 H H212 CLR . . . E 2 135.574 111.47 129.327 1 20 ? H212 CLR 704 B 1 HETATM 60 H H213 CLR . . . E 2 137.034 110.864 129.457 1 20 ? H213 CLR 704 B 1 HETATM 61 H H221 CLR . . . E 2 134.011 110.593 127.856 1 20 ? H221 CLR 704 B 1 HETATM 62 H H222 CLR . . . E 2 134.332 109.25 127.128 1 20 ? H222 CLR 704 B 1 HETATM 63 H H231 CLR . . . E 2 135.055 110.685 125.172 1 20 ? H231 CLR 704 B 1 HETATM 64 H H232 CLR . . . E 2 134.34 111.879 125.918 1 20 ? H232 CLR 704 B 1 HETATM 65 H H241 CLR . . . E 2 132.82 111.002 124.308 1 20 ? H241 CLR 704 B 1 HETATM 66 H H242 CLR . . . E 2 132.241 110.69 125.746 1 20 ? H242 CLR 704 B 1 HETATM 67 H H25 CLR . . . E 2 133.174 108.397 125.514 1 20 ? H25 CLR 704 B 1 HETATM 68 H H261 CLR . . . E 2 133.559 107.671 123.235 1 20 ? H261 CLR 704 B 1 HETATM 69 H H262 CLR . . . E 2 134.63 108.764 123.667 1 20 ? H262 CLR 704 B 1 HETATM 70 H H263 CLR . . . E 2 133.406 109.172 122.743 1 20 ? H263 CLR 704 B 1 HETATM 71 H H271 CLR . . . E 2 131.02 109 123.701 1 20 ? H271 CLR 704 B 1 HETATM 72 H H272 CLR . . . E 2 130.793 108.842 125.261 1 20 ? H272 CLR 704 B 1 HETATM 73 H H273 CLR . . . E 2 131.252 107.592 124.387 1 20 ? H273 CLR 704 B 1 HETATM 74 H H1 CLR . . . E 2 146.142 104.172 128.578 1 20 ? H1 CLR 704 B 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 74 #