data_9EPL # _model_server_result.job_id SQb3gFhVzN8pGbrlEnjpww _model_server_result.datetime_utc '2024-12-01 03:29:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9epl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 9EPL # _exptl.entry_id 9EPL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.54 _cell.angle_gamma 90 _cell.entry_id 9EPL _cell.length_a 114.26 _cell.length_b 53.1 _cell.length_c 44.63 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9EPL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -9.690117 0 43.565336 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D NA NA . A NA 403 1_555 G O HOH . A HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.873 ? metalc ? metalc2 D NA NA . A NA 403 1_555 G O HOH . A HOH 514 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 9EPL _atom_sites.fract_transf_matrix[1][1] 0.008752 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001947 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018832 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022954 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 402 GOL GOL . C 3 EDO A 1 402 403 EDO EDO . D 4 NA A 1 403 1 NA NA . E 5 SO4 A 1 404 1 SO4 SO4 . F 5 SO4 A 1 405 2 SO4 SO4 . G 6 HOH A 1 501 256 HOH HOH . G 6 HOH A 2 502 79 HOH HOH . G 6 HOH A 3 503 266 HOH HOH . G 6 HOH A 4 504 243 HOH HOH . G 6 HOH A 5 505 252 HOH HOH . G 6 HOH A 6 506 235 HOH HOH . G 6 HOH A 7 507 244 HOH HOH . G 6 HOH A 8 508 4 HOH HOH . G 6 HOH A 9 509 254 HOH HOH . G 6 HOH A 10 510 39 HOH HOH . G 6 HOH A 11 511 239 HOH HOH . G 6 HOH A 12 512 250 HOH HOH . G 6 HOH A 13 513 264 HOH HOH . G 6 HOH A 14 514 132 HOH HOH . G 6 HOH A 15 515 265 HOH HOH . G 6 HOH A 16 516 118 HOH HOH . G 6 HOH A 17 517 82 HOH HOH . G 6 HOH A 18 518 225 HOH HOH . G 6 HOH A 19 519 171 HOH HOH . G 6 HOH A 20 520 77 HOH HOH . G 6 HOH A 21 521 75 HOH HOH . G 6 HOH A 22 522 201 HOH HOH . G 6 HOH A 23 523 33 HOH HOH . G 6 HOH A 24 524 137 HOH HOH . G 6 HOH A 25 525 36 HOH HOH . G 6 HOH A 26 526 64 HOH HOH . G 6 HOH A 27 527 48 HOH HOH . G 6 HOH A 28 528 130 HOH HOH . G 6 HOH A 29 529 102 HOH HOH . G 6 HOH A 30 530 147 HOH HOH . G 6 HOH A 31 531 191 HOH HOH . G 6 HOH A 32 532 229 HOH HOH . G 6 HOH A 33 533 109 HOH HOH . G 6 HOH A 34 534 32 HOH HOH . G 6 HOH A 35 535 185 HOH HOH . G 6 HOH A 36 536 203 HOH HOH . G 6 HOH A 37 537 16 HOH HOH . G 6 HOH A 38 538 131 HOH HOH . G 6 HOH A 39 539 84 HOH HOH . G 6 HOH A 40 540 54 HOH HOH . G 6 HOH A 41 541 159 HOH HOH . G 6 HOH A 42 542 31 HOH HOH . G 6 HOH A 43 543 240 HOH HOH . G 6 HOH A 44 544 76 HOH HOH . G 6 HOH A 45 545 3 HOH HOH . G 6 HOH A 46 546 78 HOH HOH . G 6 HOH A 47 547 149 HOH HOH . G 6 HOH A 48 548 227 HOH HOH . G 6 HOH A 49 549 57 HOH HOH . G 6 HOH A 50 550 21 HOH HOH . G 6 HOH A 51 551 226 HOH HOH . G 6 HOH A 52 552 270 HOH HOH . G 6 HOH A 53 553 53 HOH HOH . G 6 HOH A 54 554 56 HOH HOH . G 6 HOH A 55 555 99 HOH HOH . G 6 HOH A 56 556 41 HOH HOH . G 6 HOH A 57 557 97 HOH HOH . G 6 HOH A 58 558 158 HOH HOH . G 6 HOH A 59 559 67 HOH HOH . G 6 HOH A 60 560 114 HOH HOH . G 6 HOH A 61 561 261 HOH HOH . G 6 HOH A 62 562 234 HOH HOH . G 6 HOH A 63 563 80 HOH HOH . G 6 HOH A 64 564 28 HOH HOH . G 6 HOH A 65 565 189 HOH HOH . G 6 HOH A 66 566 26 HOH HOH . G 6 HOH A 67 567 104 HOH HOH . G 6 HOH A 68 568 70 HOH HOH . G 6 HOH A 69 569 29 HOH HOH . G 6 HOH A 70 570 2 HOH HOH . G 6 HOH A 71 571 83 HOH HOH . G 6 HOH A 72 572 249 HOH HOH . G 6 HOH A 73 573 51 HOH HOH . G 6 HOH A 74 574 69 HOH HOH . G 6 HOH A 75 575 24 HOH HOH . G 6 HOH A 76 576 66 HOH HOH . G 6 HOH A 77 577 7 HOH HOH . G 6 HOH A 78 578 193 HOH HOH . G 6 HOH A 79 579 233 HOH HOH . G 6 HOH A 80 580 92 HOH HOH . G 6 HOH A 81 581 68 HOH HOH . G 6 HOH A 82 582 126 HOH HOH . G 6 HOH A 83 583 30 HOH HOH . G 6 HOH A 84 584 42 HOH HOH . G 6 HOH A 85 585 269 HOH HOH . G 6 HOH A 86 586 47 HOH HOH . G 6 HOH A 87 587 110 HOH HOH . G 6 HOH A 88 588 129 HOH HOH . G 6 HOH A 89 589 8 HOH HOH . G 6 HOH A 90 590 35 HOH HOH . G 6 HOH A 91 591 46 HOH HOH . G 6 HOH A 92 592 140 HOH HOH . G 6 HOH A 93 593 142 HOH HOH . G 6 HOH A 94 594 247 HOH HOH . G 6 HOH A 95 595 19 HOH HOH . G 6 HOH A 96 596 1 HOH HOH . G 6 HOH A 97 597 9 HOH HOH . G 6 HOH A 98 598 58 HOH HOH . G 6 HOH A 99 599 255 HOH HOH . G 6 HOH A 100 600 117 HOH HOH . G 6 HOH A 101 601 231 HOH HOH . G 6 HOH A 102 602 20 HOH HOH . G 6 HOH A 103 603 60 HOH HOH . G 6 HOH A 104 604 103 HOH HOH . G 6 HOH A 105 605 61 HOH HOH . G 6 HOH A 106 606 91 HOH HOH . G 6 HOH A 107 607 144 HOH HOH . G 6 HOH A 108 608 72 HOH HOH . G 6 HOH A 109 609 242 HOH HOH . G 6 HOH A 110 610 207 HOH HOH . G 6 HOH A 111 611 101 HOH HOH . G 6 HOH A 112 612 13 HOH HOH . G 6 HOH A 113 613 10 HOH HOH . G 6 HOH A 114 614 49 HOH HOH . G 6 HOH A 115 615 177 HOH HOH . G 6 HOH A 116 616 63 HOH HOH . G 6 HOH A 117 617 165 HOH HOH . G 6 HOH A 118 618 238 HOH HOH . G 6 HOH A 119 619 34 HOH HOH . G 6 HOH A 120 620 93 HOH HOH . G 6 HOH A 121 621 248 HOH HOH . G 6 HOH A 122 622 18 HOH HOH . G 6 HOH A 123 623 45 HOH HOH . G 6 HOH A 124 624 133 HOH HOH . G 6 HOH A 125 625 43 HOH HOH . G 6 HOH A 126 626 12 HOH HOH . G 6 HOH A 127 627 139 HOH HOH . G 6 HOH A 128 628 74 HOH HOH . G 6 HOH A 129 629 168 HOH HOH . G 6 HOH A 130 630 50 HOH HOH . G 6 HOH A 131 631 22 HOH HOH . G 6 HOH A 132 632 128 HOH HOH . G 6 HOH A 133 633 260 HOH HOH . G 6 HOH A 134 634 108 HOH HOH . G 6 HOH A 135 635 86 HOH HOH . G 6 HOH A 136 636 55 HOH HOH . G 6 HOH A 137 637 17 HOH HOH . G 6 HOH A 138 638 40 HOH HOH . G 6 HOH A 139 639 154 HOH HOH . G 6 HOH A 140 640 105 HOH HOH . G 6 HOH A 141 641 220 HOH HOH . G 6 HOH A 142 642 120 HOH HOH . G 6 HOH A 143 643 263 HOH HOH . G 6 HOH A 144 644 209 HOH HOH . G 6 HOH A 145 645 257 HOH HOH . G 6 HOH A 146 646 245 HOH HOH . G 6 HOH A 147 647 196 HOH HOH . G 6 HOH A 148 648 38 HOH HOH . G 6 HOH A 149 649 213 HOH HOH . G 6 HOH A 150 650 59 HOH HOH . G 6 HOH A 151 651 267 HOH HOH . G 6 HOH A 152 652 258 HOH HOH . G 6 HOH A 153 653 222 HOH HOH . G 6 HOH A 154 654 272 HOH HOH . G 6 HOH A 155 655 157 HOH HOH . G 6 HOH A 156 656 251 HOH HOH . G 6 HOH A 157 657 87 HOH HOH . G 6 HOH A 158 658 211 HOH HOH . G 6 HOH A 159 659 44 HOH HOH . G 6 HOH A 160 660 214 HOH HOH . G 6 HOH A 161 661 210 HOH HOH . G 6 HOH A 162 662 253 HOH HOH . G 6 HOH A 163 663 212 HOH HOH . G 6 HOH A 164 664 259 HOH HOH . G 6 HOH A 165 665 65 HOH HOH . G 6 HOH A 166 666 271 HOH HOH . G 6 HOH A 167 667 223 HOH HOH . G 6 HOH A 168 668 262 HOH HOH . G 6 HOH A 169 669 151 HOH HOH . G 6 HOH A 170 670 187 HOH HOH . G 6 HOH A 171 671 230 HOH HOH . G 6 HOH A 172 672 62 HOH HOH . G 6 HOH A 173 673 232 HOH HOH . G 6 HOH A 174 674 268 HOH HOH . G 6 HOH A 175 675 218 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -12.678 -22.154 27.595 1 23.3 0 C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . B 2 -13.996 -22.013 28.081 1 23.44 0 O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . B 2 -11.725 -22.958 28.446 1 25.75 0 C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . B 2 -10.613 -23.649 27.777 1 29.3 0 O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . B 2 -11.242 -22.113 29.586 1 24.41 0 C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . B 2 -10.522 -22.932 30.496 1 26.99 0 O3 GOL 401 A 1 HETATM 7 H H11 GOL . . . B 2 -12.293 -21.242 27.479 1 23.02 0 H11 GOL 401 A 1 HETATM 8 H H12 GOL . . . B 2 -12.745 -22.63 26.782 1 23.69 0 H12 GOL 401 A 1 HETATM 9 H HO1 GOL . . . B 2 -14.424 -21.548 27.498 0 30 0 HO1 GOL 401 A 1 HETATM 10 H H2 GOL . . . B 2 -12.274 -23.67 28.855 1 25.65 0 H2 GOL 401 A 1 HETATM 11 H HO2 GOL . . . B 2 -9.917 -23.352 28.125 0 30 0 HO2 GOL 401 A 1 HETATM 12 H H31 GOL . . . B 2 -12.012 -21.7 30.047 1 24.73 0 H31 GOL 401 A 1 HETATM 13 H H32 GOL . . . B 2 -10.654 -21.397 29.243 1 25.17 0 H32 GOL 401 A 1 HETATM 14 H HO3 GOL . . . B 2 -9.782 -23.157 30.134 1 26.73 0 HO3 GOL 401 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #