data_9EPO # _model_server_result.job_id 3X8snOpBAmMsV1OUlK5B0w _model_server_result.datetime_utc '2024-11-01 15:30:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9epo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":703}' # _entry.id 9EPO # _exptl.entry_id 9EPO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9EPO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9EPO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 201 A CYS 210 1_555 A SG CYS 221 A CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 225 A CYS 234 1_555 A SG CYS 306 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf3 A SG CYS 327 A CYS 336 1_555 A SG CYS 402 A CYS 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 499 A CYS 508 1_555 A SG CYS 506 A CYS 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 B SG CYS 201 D CYS 210 1_555 B SG CYS 221 D CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 225 D CYS 234 1_555 B SG CYS 306 D CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf7 B SG CYS 327 D CYS 336 1_555 B SG CYS 402 D CYS 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 B SG CYS 499 D CYS 508 1_555 B SG CYS 506 D CYS 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 425 n n CBA CAB Y01 sing 426 n n CBA CAN Y01 sing 427 n n CAN CAJ Y01 sing 428 n n CAJ CAO Y01 sing 429 n n CAO CBB Y01 sing 430 n n CBB CAC Y01 sing 431 n n CBB CBE Y01 sing 432 n n CBE CAP Y01 sing 433 n n CBE CBI Y01 sing 434 n n CAP CAQ Y01 sing 435 n n CAQ CBG Y01 sing 436 n n CBG CBI Y01 sing 437 n n CBG CBD Y01 sing 438 n n CBI CAE Y01 sing 439 n n CBI CAU Y01 sing 440 n n CAU CAS Y01 sing 441 n n CAS CBF Y01 sing 442 n n CBF CBD Y01 sing 443 n n CBF CBH Y01 sing 444 n n CBD CAK Y01 sing 445 n n CAK CAI Y01 sing 446 n n CAI CAZ Y01 doub 447 n n CAZ CAV Y01 sing 448 n n CAZ CBH Y01 sing 449 n n CAV CBC Y01 sing 450 n n CBH CAD Y01 sing 451 n n CBH CAT Y01 sing 452 n n CAT CAR Y01 sing 453 n n CAR CBC Y01 sing 454 n n CBC OAW Y01 sing 455 n n OAW CAY Y01 sing 456 n n CAY OAG Y01 doub 457 n n CAY CAM Y01 sing 458 n n CAM CAL Y01 sing 459 n n CAL CAX Y01 sing 460 n n CAX OAH Y01 sing 461 n n CAX OAF Y01 doub 462 n n CAA HAA1 Y01 sing 463 n n CAA HAA2 Y01 sing 464 n n CAA HAA3 Y01 sing 465 n n CBA HBA Y01 sing 466 n n CAB HAB1 Y01 sing 467 n n CAB HAB2 Y01 sing 468 n n CAB HAB3 Y01 sing 469 n n CAN HAN1 Y01 sing 470 n n CAN HAN2 Y01 sing 471 n n CAJ HAJ1 Y01 sing 472 n n CAJ HAJ2 Y01 sing 473 n n CAO HAO1 Y01 sing 474 n n CAO HAO2 Y01 sing 475 n n CBB HBB Y01 sing 476 n n CAC HAC1 Y01 sing 477 n n CAC HAC2 Y01 sing 478 n n CAC HAC3 Y01 sing 479 n n CBE HBE Y01 sing 480 n n CAP HAP1 Y01 sing 481 n n CAP HAP2 Y01 sing 482 n n CAQ HAQ1 Y01 sing 483 n n CAQ HAQ2 Y01 sing 484 n n CBG HBG Y01 sing 485 n n CBD HBD Y01 sing 486 n n CAE HAE1 Y01 sing 487 n n CAE HAE2 Y01 sing 488 n n CAE HAE3 Y01 sing 489 n n CAU HAU1 Y01 sing 490 n n CAU HAU2 Y01 sing 491 n n CAS HAS1 Y01 sing 492 n n CAS HAS2 Y01 sing 493 n n CBF HBF Y01 sing 494 n n CAK HAK1 Y01 sing 495 n n CAK HAK2 Y01 sing 496 n n CAI HAI Y01 sing 497 n n CAV HAV1 Y01 sing 498 n n CAV HAV2 Y01 sing 499 n n CBC HBC Y01 sing 500 n n CAD HAD1 Y01 sing 501 n n CAD HAD2 Y01 sing 502 n n CAD HAD3 Y01 sing 503 n n CAT HAT1 Y01 sing 504 n n CAT HAT2 Y01 sing 505 n n CAR HAR1 Y01 sing 506 n n CAR HAR2 Y01 sing 507 n n CAM HAM1 Y01 sing 508 n n CAM HAM2 Y01 sing 509 n n CAL HAL1 Y01 sing 510 n n CAL HAL2 Y01 sing 511 n n OAH HAH Y01 sing 512 n n # _atom_sites.entry_id 9EPO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 Y01 A 1 701 602 Y01 Y01 . D 3 PLM A 1 702 603 PLM PLM . E 2 Y01 A 1 703 601 Y01 Y01 . F 2 Y01 D 1 701 601 Y01 Y01 . G 2 Y01 D 1 702 602 Y01 Y01 . H 3 PLM D 1 703 603 PLM PLM . I 4 HOH A 1 801 13 HOH HOH . I 4 HOH A 2 802 71 HOH HOH . I 4 HOH A 3 803 73 HOH HOH . I 4 HOH A 4 804 45 HOH HOH . I 4 HOH A 5 805 21 HOH HOH . I 4 HOH A 6 806 20 HOH HOH . I 4 HOH A 7 807 40 HOH HOH . I 4 HOH A 8 808 75 HOH HOH . I 4 HOH A 9 809 74 HOH HOH . I 4 HOH A 10 810 70 HOH HOH . I 4 HOH A 11 811 66 HOH HOH . I 4 HOH A 12 812 29 HOH HOH . I 4 HOH A 13 813 39 HOH HOH . I 4 HOH A 14 814 36 HOH HOH . I 4 HOH A 15 815 54 HOH HOH . I 4 HOH A 16 816 32 HOH HOH . I 4 HOH A 17 817 33 HOH HOH . I 4 HOH A 18 818 44 HOH HOH . I 4 HOH A 19 819 37 HOH HOH . I 4 HOH A 20 820 72 HOH HOH . I 4 HOH A 21 821 12 HOH HOH . I 4 HOH A 22 822 19 HOH HOH . I 4 HOH A 23 823 55 HOH HOH . I 4 HOH A 24 824 35 HOH HOH . I 4 HOH A 25 825 24 HOH HOH . I 4 HOH A 26 826 26 HOH HOH . I 4 HOH A 27 827 46 HOH HOH . I 4 HOH A 28 828 17 HOH HOH . I 4 HOH A 29 829 16 HOH HOH . I 4 HOH A 30 830 52 HOH HOH . I 4 HOH A 31 831 50 HOH HOH . I 4 HOH A 32 832 31 HOH HOH . I 4 HOH A 33 833 28 HOH HOH . I 4 HOH A 34 834 30 HOH HOH . I 4 HOH A 35 835 48 HOH HOH . I 4 HOH A 36 836 53 HOH HOH . I 4 HOH A 37 837 18 HOH HOH . I 4 HOH A 38 838 63 HOH HOH . I 4 HOH A 39 839 59 HOH HOH . I 4 HOH A 40 840 22 HOH HOH . I 4 HOH A 41 841 67 HOH HOH . I 4 HOH A 42 842 11 HOH HOH . I 4 HOH A 43 843 62 HOH HOH . I 4 HOH A 44 844 15 HOH HOH . I 4 HOH A 45 845 10 HOH HOH . I 4 HOH A 46 846 34 HOH HOH . I 4 HOH A 47 847 14 HOH HOH . J 4 HOH D 1 801 13 HOH HOH . J 4 HOH D 2 802 71 HOH HOH . J 4 HOH D 3 803 73 HOH HOH . J 4 HOH D 4 804 45 HOH HOH . J 4 HOH D 5 805 21 HOH HOH . J 4 HOH D 6 806 20 HOH HOH . J 4 HOH D 7 807 40 HOH HOH . J 4 HOH D 8 808 75 HOH HOH . J 4 HOH D 9 809 74 HOH HOH . J 4 HOH D 10 810 70 HOH HOH . J 4 HOH D 11 811 66 HOH HOH . J 4 HOH D 12 812 29 HOH HOH . J 4 HOH D 13 813 39 HOH HOH . J 4 HOH D 14 814 36 HOH HOH . J 4 HOH D 15 815 54 HOH HOH . J 4 HOH D 16 816 32 HOH HOH . J 4 HOH D 17 817 33 HOH HOH . J 4 HOH D 18 818 44 HOH HOH . J 4 HOH D 19 819 37 HOH HOH . J 4 HOH D 20 820 72 HOH HOH . J 4 HOH D 21 821 12 HOH HOH . J 4 HOH D 22 822 19 HOH HOH . J 4 HOH D 23 823 55 HOH HOH . J 4 HOH D 24 824 35 HOH HOH . J 4 HOH D 25 825 24 HOH HOH . J 4 HOH D 26 826 26 HOH HOH . J 4 HOH D 27 827 46 HOH HOH . J 4 HOH D 28 828 17 HOH HOH . J 4 HOH D 29 829 16 HOH HOH . J 4 HOH D 30 830 52 HOH HOH . J 4 HOH D 31 831 50 HOH HOH . J 4 HOH D 32 832 31 HOH HOH . J 4 HOH D 33 833 28 HOH HOH . J 4 HOH D 34 834 30 HOH HOH . J 4 HOH D 35 835 48 HOH HOH . J 4 HOH D 36 836 53 HOH HOH . J 4 HOH D 37 837 18 HOH HOH . J 4 HOH D 38 838 63 HOH HOH . J 4 HOH D 39 839 59 HOH HOH . J 4 HOH D 40 840 22 HOH HOH . J 4 HOH D 41 841 67 HOH HOH . J 4 HOH D 42 842 62 HOH HOH . J 4 HOH D 43 843 11 HOH HOH . J 4 HOH D 44 844 15 HOH HOH . J 4 HOH D 45 845 10 HOH HOH . J 4 HOH D 46 846 34 HOH HOH . J 4 HOH D 47 847 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . E 2 128.846 130.811 134.609 1 20 ? CAA Y01 703 A 1 HETATM 2 C CBA Y01 . . . E 2 129.17 129.73 135.617 1 20 ? CBA Y01 703 A 1 HETATM 3 C CAB Y01 . . . E 2 130.619 129.815 136.045 1 20 ? CAB Y01 703 A 1 HETATM 4 C CAN Y01 . . . E 2 128.827 128.349 135.1 1 20 ? CAN Y01 703 A 1 HETATM 5 C CAJ Y01 . . . E 2 128.993 127.219 136.103 1 20 ? CAJ Y01 703 A 1 HETATM 6 C CAO Y01 . . . E 2 128.599 125.862 135.544 1 20 ? CAO Y01 703 A 1 HETATM 7 C CBB Y01 . . . E 2 128.616 124.716 136.567 1 20 ? CBB Y01 703 A 1 HETATM 8 C CAC Y01 . . . E 2 127.44 124.848 137.531 1 20 ? CAC Y01 703 A 1 HETATM 9 C CBE Y01 . . . E 2 128.661 123.359 135.84 1 20 ? CBE Y01 703 A 1 HETATM 10 C CAP Y01 . . . E 2 129.759 123.324 134.761 1 20 ? CAP Y01 703 A 1 HETATM 11 C CAQ Y01 . . . E 2 130.128 121.845 134.576 1 20 ? CAQ Y01 703 A 1 HETATM 12 C CBG Y01 . . . E 2 129.198 121.073 135.525 1 20 ? CBG Y01 703 A 1 HETATM 13 C CBI Y01 . . . E 2 128.9 122.071 136.661 1 20 ? CBI Y01 703 A 1 HETATM 14 C CAE Y01 . . . E 2 130.107 122.233 137.599 1 20 ? CAE Y01 703 A 1 HETATM 15 C CAU Y01 . . . E 2 127.701 121.497 137.424 1 20 ? CAU Y01 703 A 1 HETATM 16 C CAS Y01 . . . E 2 127.983 120.09 137.952 1 20 ? CAS Y01 703 A 1 HETATM 17 C CBF Y01 . . . E 2 128.469 119.103 136.88 1 20 ? CBF Y01 703 A 1 HETATM 18 C CBD Y01 . . . E 2 129.608 119.688 136.024 1 20 ? CBD Y01 703 A 1 HETATM 19 C CAK Y01 . . . E 2 129.924 118.759 134.856 1 20 ? CAK Y01 703 A 1 HETATM 20 C CAI Y01 . . . E 2 129.857 117.312 135.23 1 20 ? CAI Y01 703 A 1 HETATM 21 C CAZ Y01 . . . E 2 129.512 116.852 136.421 1 20 ? CAZ Y01 703 A 1 HETATM 22 C CAV Y01 . . . E 2 129.733 115.403 136.78 1 20 ? CAV Y01 703 A 1 HETATM 23 C CBH Y01 . . . E 2 128.805 117.7 137.466 1 20 ? CBH Y01 703 A 1 HETATM 24 C CAD Y01 . . . E 2 129.718 117.806 138.703 1 20 ? CAD Y01 703 A 1 HETATM 25 C CAT Y01 . . . E 2 127.499 116.994 137.852 1 20 ? CAT Y01 703 A 1 HETATM 26 C CAR Y01 . . . E 2 127.759 115.556 138.309 1 20 ? CAR Y01 703 A 1 HETATM 27 C CBC Y01 . . . E 2 128.439 114.746 137.224 1 20 ? CBC Y01 703 A 1 HETATM 28 O OAW Y01 . . . E 2 128.797 113.447 137.781 1 20 ? OAW Y01 703 A 1 HETATM 29 C CAY Y01 . . . E 2 127.82 112.552 137.971 1 20 ? CAY Y01 703 A 1 HETATM 30 O OAG Y01 . . . E 2 126.687 112.712 137.612 1 20 ? OAG Y01 703 A 1 HETATM 31 C CAM Y01 . . . E 2 128.34 111.322 138.651 1 20 ? CAM Y01 703 A 1 HETATM 32 C CAL Y01 . . . E 2 127.891 111.236 140.096 1 20 ? CAL Y01 703 A 1 HETATM 33 C CAX Y01 . . . E 2 128.49 110.079 140.871 1 20 ? CAX Y01 703 A 1 HETATM 34 O OAH Y01 . . . E 2 129.672 109.757 140.632 1 20 ? OAH Y01 703 A 1 HETATM 35 O OAF Y01 . . . E 2 127.751 109.508 141.709 1 20 ? OAF Y01 703 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #