data_9EPP # _model_server_result.job_id lBc3W14oWPs0lPVtfCKaQg _model_server_result.datetime_utc '2025-04-21 21:34:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9epp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 9EPP # _exptl.entry_id 9EPP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 310.473 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 11,20-Ethanoretinal _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9EPP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9EPP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 R CYS 123 1_555 A SG CYS 181 R CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? covale ? covale1 A NZ LYS 302 R LYS 321 1_555 E C17 A1H6M . R A1H6M 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.276 ? # _chem_comp.formula 'C22 H30 O' _chem_comp.formula_weight 310.473 _chem_comp.id A1H6M _chem_comp.mon_nstd_flag . _chem_comp.name 11,20-Ethanoretinal _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2E)-2-[3-[(1E,3E)-2-methyl-4-(2,6,6-trimethylcyclohexen-1-yl)buta-1,3-dienyl]cyclohex-2-en-1-ylidene]ethanal;Retinal 6.11' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C19 A1H6M sing 1 n n C21 C19 A1H6M sing 2 n n C21 C22 A1H6M sing 3 n n C19 C4 A1H6M doub 4 n n C22 C23 A1H6M sing 5 n n C11 C10 A1H6M doub 6 n n C11 C12 A1H6M sing 7 n n C16 C12 A1H6M doub 8 e n C16 C17 A1H6M sing 9 n n C4 C5 A1H6M sing 10 n n C4 C2 A1H6M sing 11 n n C9 C10 A1H6M sing 12 n n C9 C7 A1H6M doub 13 e n C6 C5 A1H6M doub 14 e n C6 C7 A1H6M sing 15 n n C10 C15 A1H6M sing 16 n n C12 C13 A1H6M sing 17 n n C23 C2 A1H6M sing 18 n n C3 C2 A1H6M sing 19 n n C7 C8 A1H6M sing 20 n n C2 C1 A1H6M sing 21 n n C15 C14 A1H6M sing 22 n n C13 C14 A1H6M sing 23 n n C14 H2 A1H6M sing 24 n n C14 H3 A1H6M sing 25 n n C15 H4 A1H6M sing 26 n n C15 H5 A1H6M sing 27 n n C16 H6 A1H6M sing 28 n n C20 H8 A1H6M sing 29 n n C20 H9 A1H6M sing 30 n n C20 H10 A1H6M sing 31 n n C21 H11 A1H6M sing 32 n n C21 H12 A1H6M sing 33 n n C22 H13 A1H6M sing 34 n n C22 H14 A1H6M sing 35 n n C23 H15 A1H6M sing 36 n n C23 H16 A1H6M sing 37 n n C1 H17 A1H6M sing 38 n n C1 H18 A1H6M sing 39 n n C1 H19 A1H6M sing 40 n n C11 H20 A1H6M sing 41 n n C13 H21 A1H6M sing 42 n n C13 H22 A1H6M sing 43 n n C17 H23 A1H6M sing 44 n n C17 O1 A1H6M doub 45 n n C3 H26 A1H6M sing 46 n n C3 H27 A1H6M sing 47 n n C3 H28 A1H6M sing 48 n n C5 H29 A1H6M sing 49 n n C6 H30 A1H6M sing 50 n n C8 H31 A1H6M sing 51 n n C8 H32 A1H6M sing 52 n n C8 H33 A1H6M sing 53 n n C9 H34 A1H6M sing 54 n n # _atom_sites.entry_id 9EPP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 5 _pdbx_nonpoly_scheme.mon_id A1H6M _pdbx_nonpoly_scheme.pdb_strand_id R _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id A1H6M _pdbx_nonpoly_scheme.auth_mon_id TR6 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1H6M . . . E 5 127.097 121.553 94.502 1 59.22 ? C10 A1H6M 401 R 1 HETATM 2 C C12 A1H6M . . . E 5 129.253 120.416 94.555 1 59.22 ? C12 A1H6M 401 R 1 HETATM 3 C C14 A1H6M . . . E 5 127.42 119.567 95.971 1 59.22 ? C14 A1H6M 401 R 1 HETATM 4 C C15 A1H6M . . . E 5 126.529 120.732 95.623 1 59.22 ? C15 A1H6M 401 R 1 HETATM 5 C C16 A1H6M . . . E 5 130.504 120.235 94.09 1 59.22 ? C16 A1H6M 401 R 1 HETATM 6 C C19 A1H6M . . . E 5 122.83 126.625 92.866 1 59.22 ? C19 A1H6M 401 R 1 HETATM 7 C C20 A1H6M . . . E 5 122.718 125.5 91.878 1 59.22 ? C20 A1H6M 401 R 1 HETATM 8 C C21 A1H6M . . . E 5 122.28 127.934 92.363 1 59.22 ? C21 A1H6M 401 R 1 HETATM 9 C C22 A1H6M . . . E 5 122.42 129.097 93.347 1 59.22 ? C22 A1H6M 401 R 1 HETATM 10 C C23 A1H6M . . . E 5 122.27 128.598 94.772 1 59.22 ? C23 A1H6M 401 R 1 HETATM 11 C C1 A1H6M . . . E 5 123.463 127.148 96.492 1 59.22 ? C1 A1H6M 401 R 1 HETATM 12 C C11 A1H6M . . . E 5 128.224 121.127 93.881 1 59.22 ? C11 A1H6M 401 R 1 HETATM 13 C C13 A1H6M . . . E 5 128.861 120.001 95.941 1 59.22 ? C13 A1H6M 401 R 1 HETATM 14 C C17 A1H6M . . . E 5 131.567 119.725 94.921 1 59.22 ? C17 A1H6M 401 R 1 HETATM 15 C C2 A1H6M . . . E 5 123.442 127.669 95.056 1 59.22 ? C2 A1H6M 401 R 1 HETATM 16 C C3 A1H6M . . . E 5 124.704 128.484 94.787 1 59.22 ? C3 A1H6M 401 R 1 HETATM 17 C C4 A1H6M . . . E 5 123.357 126.507 94.094 1 59.22 ? C4 A1H6M 401 R 1 HETATM 18 C C5 A1H6M . . . E 5 123.901 125.327 94.59 1 59.22 ? C5 A1H6M 401 R 1 HETATM 19 C C6 A1H6M . . . E 5 125.01 124.724 94.186 1 59.22 ? C6 A1H6M 401 R 1 HETATM 20 C C7 A1H6M . . . E 5 125.641 123.599 94.847 1 59.22 ? C7 A1H6M 401 R 1 HETATM 21 C C8 A1H6M . . . E 5 125.209 123.302 96.253 1 59.22 ? C8 A1H6M 401 R 1 HETATM 22 C C9 A1H6M . . . E 5 126.547 122.852 94.183 1 59.22 ? C9 A1H6M 401 R 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #