data_9EPY # _model_server_result.job_id jrKefysofMHx9Ne8JOd8OQ _model_server_result.datetime_utc '2024-11-22 06:34:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9epy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":408}' # _entry.id 9EPY # _exptl.entry_id 9EPY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9EPY _cell.length_a 126.645 _cell.length_b 126.645 _cell.length_c 124.25 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9EPY _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,X 1 1 B,N,O,P,Q,R,S,T,U,V,W,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 U N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 155 n n C1 C2 EDO sing 156 n n C1 H11 EDO sing 157 n n C1 H12 EDO sing 158 n n O1 HO1 EDO sing 159 n n C2 O2 EDO sing 160 n n C2 H21 EDO sing 161 n n C2 H22 EDO sing 162 n n O2 HO2 EDO sing 163 n n # _atom_sites.entry_id 9EPY _atom_sites.fract_transf_matrix[1][1] 0.007896 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007896 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 401 3 SO4 SO4 . D 2 SO4 A 1 402 5 SO4 SO4 . E 2 SO4 A 1 403 7 SO4 SO4 . F 2 SO4 A 1 404 15 SO4 SO4 . G 2 SO4 A 1 405 16 SO4 SO4 . H 2 SO4 A 1 406 410 SO4 SO4 . I 2 SO4 A 1 407 411 SO4 SO4 . J 3 EDO A 1 408 413 EDO EDO . K 4 A1H6G A 1 409 414 A1H6G 330 . L 2 SO4 A 1 410 1 SO4 SO4 . M 2 SO4 A 1 411 3 SO4 SO4 . N 2 SO4 B 1 401 4 SO4 SO4 . O 2 SO4 B 1 402 6 SO4 SO4 . P 2 SO4 B 1 403 8 SO4 SO4 . Q 2 SO4 B 1 404 10 SO4 SO4 . R 2 SO4 B 1 405 14 SO4 SO4 . S 2 SO4 B 1 406 20 SO4 SO4 . T 2 SO4 B 1 407 21 SO4 SO4 . U 3 EDO B 1 408 23 EDO EDO . V 4 A1H6G B 1 409 24 A1H6G 330 . W 2 SO4 B 1 410 2 SO4 SO4 . X 5 HOH A 1 501 31 HOH HOH . X 5 HOH A 2 502 35 HOH HOH . X 5 HOH A 3 503 38 HOH HOH . X 5 HOH A 4 504 28 HOH HOH . X 5 HOH A 5 505 27 HOH HOH . X 5 HOH A 6 506 34 HOH HOH . X 5 HOH A 7 507 25 HOH HOH . X 5 HOH A 8 508 41 HOH HOH . Y 5 HOH B 1 501 33 HOH HOH . Y 5 HOH B 2 502 37 HOH HOH . Y 5 HOH B 3 503 30 HOH HOH . Y 5 HOH B 4 504 26 HOH HOH . Y 5 HOH B 5 505 42 HOH HOH . Y 5 HOH B 6 506 32 HOH HOH . Y 5 HOH B 7 507 36 HOH HOH . Y 5 HOH B 8 508 39 HOH HOH . Y 5 HOH B 9 509 23 HOH HOH . Y 5 HOH B 10 510 24 HOH HOH . Y 5 HOH B 11 511 29 HOH HOH . Y 5 HOH B 12 512 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 3 33.575 -3.449 44.523 1 99.11 ? C1 EDO 408 A 1 HETATM 2 O O1 EDO . . . J 3 34.073 -3.661 45.841 1 91.07 ? O1 EDO 408 A 1 HETATM 3 C C2 EDO . . . J 3 32.091 -3.289 44.46 1 100.22 ? C2 EDO 408 A 1 HETATM 4 O O2 EDO . . . J 3 31.606 -2.942 43.171 1 95.42 ? O2 EDO 408 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #